These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1108 fasta sequence [CGCCCCGAGGTTTCAAACGTATATTGTAGGAAAAGTTGTGAGATTTTATCCAAAAATTACCATACTATTTTACTAACTAGTTTACCTGATTTTAAAGCTCTTGTAATGAGTACAGGCGGCAGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCACTGGGCGGTGCGATCGGTCGCGAGGACATTTGGGACGACAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCGTTCGAGATCGGTGACTATGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGCCATGGGGACTGTTTGATCCGGTACGTCGGGTACAACAACGAGCAGACGGTGTTGCTGGAGGAGCTGCTACCGTCCTGGGGGCGAAAAGGCACGGCGTCAGCAGCGCGTTGAGGCGGCCGAAGCGGAAGCTGCCGCTGCCGACTCGCAGATGGACATTAGCGATGACGAGCGGTTCACGAAGCAGGCCAGCAAGATCAAGATTAACTTCGGACCGAACTTCGGACGATCGAGTATGGGCCAGGCGGCCGGCGGCAGAAGTGGACGATCTGGCATGTTGGGCCCCAGCATGTCCACAGCATACATGGTTCCGCCACCTCCGCCGATGCCCCCGATGCTGGAAGACGCGGATGATGTCGAGTCGGAGAACCTGTCCGCCATGCTGATGTCGTGGTACATGAGCGGTTACTACACCGGGCTCTACCATGGCCAGCGGATGTCTCAGCAGCAGCAGCAACACACGCAGCAGAAGCGGGCACGACNATCGTAATTTTTGCTATGTTCGAGCGGAAACTGTANGGTTGCTGTCGTCNAGTTTTAACGANGAAAT] [+] EMBL AL933232 [CGCCCCGAGGTTTCAAACGTATATTGTAGGAAAAGTTGTGAGATTTTATCCAAAAATTACCATACTATTTTACTAACTAGTTTACCTGATTTTAAAGCTCTTGTAATGAGTACAGGCGGCAGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCACTGGGCGGTGCGATCGGTCGCGAGGACATTTGGGACGACAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCG TCGAGATCGGTGACTATGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAG CATGGGGACTGTTga ] [+] EMBL BM602528 [ ccgATTGTAGGAAAAGTTGTGAGATTTTATCCAAAAATTACCATACTATTTTACTAACTAGTTTACCTGATTTTAAAGCTCTGGTGATGAGTACAGGCGGCAGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCACTGGGCGGTGCGATCGGTCGCGAAGACATTTGGGACGACAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGCCAACCAGCGACGGGCGCGTTCGAGATCGGTGACTACGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGCCATGGGGACTGTTTGATCCGGTACGTCGGGTACAACAACGAGCAGACGGTGTTGCTGGAGGAGCTGCTACCGTCCTGGGGGCGAAAAGGCACGGCGTCAGCAGCGCGTTG ] [+] EMBL BX623603 [ ACTAACTAGTTTACCTGATTTTAAAGCTCTTGTAATGAGTACAGGCGGCAGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCACTGGGCGGTGCGATCGGTCGCGAGGACATTTGGGACGACAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCGTTCGAGATCGGTGACTATGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGCCATGGGGACTGTTTGATCCGGTA ] [+] EMBL BX623702 [ AGGGCACAGCGAACGGTCCACCAGCAACGGGCGCGTTCGAGATCGGCGACTACGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGCCATGGGGACTGTTTGATCCGGTACGTCGGGTACAACAACGAGCAGACGGTGTTGCTGGAGGAGCTGCTACCGTCCTGGGGGCG AAAGGCACGGCGTCAGCAGCGCGTTGAGGCGGCCGAAGCGGAAGCTGCCGCTGCCGACTCGCAGATGGACATTAGCGATGACGAGCGGTTCACGAAGCAGGCCAGCAAGATCAAGATTAACTTCGGACCGAACTTCGGACGATCGAGTATGGGCCAGGCGGCCGGCGGCAGAAGTGGACGATCTGGCATGTTGGGCCCCAGCATGTCCACAGCATACATGGTTCCGCCACCTCCGCCGATGCCCCCGATGCTGGAAGACGCGGATGATGTCGAGTCGGAGAACCTGTCCGCCATGCTGATGTCGTGGTACATGAGCGGTTACTACACCGGGCTCTACCATGGCCAGCGGATGTCTCAGCAGCAGCAGCAACACACGCAGCAGAAGCGGGCACGACNATCGTAATTTTTGCTATGTTCGAGCGGAAACTGTANGGTTGCTGTCGTCNAGTTTTAACGANGAAAT] consensusID : consensus_6195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [CAGGCCAGAATCGCCACGAGGTTAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAAACAGCGATTCGACCGGAGGGGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGAATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCGTTCGAGATCGGTGACTACGTGCGAGCGACCTACGACGATTGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGGCCATGGGGACTGTTTGATCCGGTACGTCGGGGTACAACAACGGAGCAGACGGTGTTGCTGGAGGAACTGCTACCGTCCTGGGGGCGAAAGGCACGGCGTCAGCAGCGCGTTGAGGCGGCNCGAAGCGGAAGCTGCCGCTGCCGACTCGCAG] [+] EMBL BX468993 [CAGGCCAGAATCGCCACGAGGTTAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAAACAGCGATTCGACCGGAGGGGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGAATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCGTTCGAGATCGGTGACTACGTGCGAGCGACCTACGACGATTGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGGCCATGGGGACTGTTTGATCCGGTACGTCGGGGTACAACAACGGAGCAGACGGTGTTGCTGGAGGAACTGCTACCGTCCTGGGGGCGAAAGGCACGGCGTCAGCAGCGCGTTGAGGCGGCNCGAAGCGGAAGCTGCCGCTGCCGACTCGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6195#0 CGCCCCGAGGTTTCAAACGTATATTGTAGGAAAAGTTGTGAGATTTTATCCAAAAATTAC 60 consensus_6195#1 ------------------------------------------------------------ consensus_6195#0 CATACTATTTTACTAACTAGTTTACCTGATTTTAAAGCTCTTGTAATGAGTACAGGCGGC 120 consensus_6195#1 ------------------------------------------------------------ consensus_6195#0 AGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCA 180 consensus_6195#1 ------------------------------------------------------------ consensus_6195#0 CTGGGCGGTGCGATCGGTCGCGAGGACATTTGGGACGACAGTATTATCATCAAAAAGTAT 240 consensus_6195#1 --------------CAG--GCCAGAATCGCCACGAGGTTAGTATTATCATCAAAAAGTAT 44 * * ** ** * ** * ********************* consensus_6195#0 GACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAAC 300 consensus_6195#1 GACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAAC 104 ************************************************************ consensus_6195#0 CGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACAC 360 consensus_6195#1 CGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACAC 164 ************************************************************ consensus_6195#0 AAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAG 420 consensus_6195#1 AAAAACAGCGATTCGACCGGAGGGGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAG 224 *** ******************* ************************************ consensus_6195#0 GGCGCGA-TGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGG 479 consensus_6195#1 GGCGCGAATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGG 284 ******* **************************************************** consensus_6195#0 CGCGTTCGAGATCGGTGACTATGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGC 539 consensus_6195#1 CGCGTTCGAGATCGGTGACTACGTGCGAGCGACCTACGACGATTGGGTGGATTACGAGGC 344 ********************* ********************* **************** consensus_6195#0 GAAAATCATTGGCTTTGGCAG-CCATGGGGACTGTTTGATCCGGTACGTCGGG-TACAAC 597 consensus_6195#1 GAAAATCATTGGCTTTGGCAGGCCATGGGGACTGTTTGATCCGGTACGTCGGGGTACAAC 404 ********************* ******************************* ****** consensus_6195#0 AACG-AGCAGACGGTGTTGCTGGAGGAGCTGCTACCGTCCTGGGGGCGAAAAGGCACGGC 656 consensus_6195#1 AACGGAGCAGACGGTGTTGCTGGAGGAACTGCTACCGTCCTGGGGGCGAAA-GGCACGGC 463 **** ********************** *********************** ******** consensus_6195#0 GTCAGCAGCGCGTTGAGGCGGCC-GAAGCGGAAGCTGCCGCTGCCGACTCGCAGATGGAC 715 consensus_6195#1 GTCAGCAGCGCGTTGAGGCGGCNCGAAGCGGAAGCTGCCGCTGCCGACTCGCAG------ 517 ********************** ****************************** consensus_6195#0 ATTAGCGATGACGAGCGGTTCACGAAGCAGGCCAGCAAGATCAAGATTAACTTCGGACCG 775 consensus_6195#1 ------------------------------------------------------------ consensus_6195#0 AACTTCGGACGATCGAGTATGGGCCAGGCGGCCGGCGGCAGAAGTGGACGATCTGGCATG 835 consensus_6195#1 ------------------------------------------------------------ consensus_6195#0 TTGGGCCCCAGCATGTCCACAGCATACATGGTTCCGCCACCTCCGCCGATGCCCCCGATG 895 consensus_6195#1 ------------------------------------------------------------ consensus_6195#0 CTGGAAGACGCGGATGATGTCGAGTCGGAGAACCTGTCCGCCATGCTGATGTCGTGGTAC 955 consensus_6195#1 ------------------------------------------------------------ consensus_6195#0 ATGAGCGGTTACTACACCGGGCTCTACCATGGCCAGCGGATGTCTCAGCAGCAGCAGCAA 1015 consensus_6195#1 ------------------------------------------------------------ consensus_6195#0 CACACGCAGCAGAAGCGGGCACGACNATCGTAATTTTTGCTATGTTCGAGCGGAAACTGT 1075 consensus_6195#1 ------------------------------------------------------------ consensus_6195#0 ANGGTTGCTGTCGTCNAGTTTTAACGANGAAAT 1108 consensus_6195#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||