These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1149 fasta sequence [AGGCAACTCTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTCCTTTTCAGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTCGAACGTTCTGCAAAGAATTCCTCGACAGTACGGGCACGGCGGAGGAACACGTGTGGAATCCAAATGCGGCCAATCAGACCTCGGTGAAAGGTTTTTTCACTTGGCGCAATCTCTTCCGTATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTACTCAAACGGGAATGCAATCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGCAGGGCGACCAGCAAATCACGCGACTCCGGCGATAAGCGCAATCAAGACAGTCAAGCATTTGGTAAATGATTGCAGCTTTACAGACATCTTGCTGACGGCATTTGCCACGAGTCTTGGGGCGTACTGCAGGCGGAAGCGCTTACCCGTGCCAACGACCGTCACTATCGGGCAGATGCGACGGTTCCATCGCGAGTCTGAAGTAATACAGCTGCGTAATCGCTCAACGGCTGTATTTAAATCGTTGCCAATAGGCAGTCTGCCATGCGGATCGAGCACNATCGACCAGCTCATATGCCAGATAAATGCTGTAAAAGGTCCAGACGACGCATTTCAGGCCAGTACAGATGCTTTAATTACTCACCTGAGCGTGTCGTACCTTCCAGAGCTACTGCCGGCTGCAGTTGTACGGGCATTATTTGCTAGAAGCAAGTTTTCGATTGCTCTGTCCAACATTCCTGCCTTCGTCGGCACTGTCTCTCTGGAAAGGTACATTCTCCGAGAGGCCACATTCTGGGTACCCAACATTGAGCGCAATCTGTTCGGGTTGACCTTACTGACAACGGACGGCCGCCTACAGATAGGTTCAATCGCTGATAGGACAATAATTAAGGATGAAGAAGAACTCGAACAAATACTTAACGAAACATTGCAGGAGCTAAGCAATATGGCGTGCATGATAAAATGCAACTAAATATCTTTTACGTGAAACAGACCTTATGTAAGTGTGAACTGACTGGGATAA] [+] EMBL BX623142 [AGGCAACTCTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTCCTTTTCAGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTCGAACGTTCTGCAAAGAATTCCTCGACAGTACGGGCACGGCGGAGGAACACGTGTGGAATCCAAATGCGGCCAATCAGACCTCGGTGAAAGGTTTTTTCACTTGGCGCAATCTCTTCCGTATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTACTCAAACGGGAATGCAATCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGCAGGGCGACCAGCAAATCACGCGACTCCGGCGATAAGCGCAATCAAGACAGTCAAGCATTTGGTAAATGATTGCAGCTTTACAGACATCTTGCTGACGGCATTTGCCACGAGTCTTGGGGCGTACTGCAGGCGGAAGCGCTTACCCGTGCCAACGACCGTCACTATCGGGCAGATGCGACGGTTCCATCGCGAGTCTGAAGTAATACAGCTGCGTAATCGCTCAACGGCTGTATTTAAATCGTTGCCAATAGGCAGTCTGCCATGCGGATCGAGCACNATCGACCAGCTCATATGCCAGATAAA ] [+] EMBL BX628119 [ ATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTCCTTTTCAGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTCGAACGTTCTGCAAAGAATTCCTCGACAGTACGGCCACGGCGGAGGAACACGTGTGGAATCCAAATGCGGCCAATCAGACCTCGGTGAATGGTTTTTTCACTTGGCGCAATCTCTTCCGTATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTACTCAAACGGGAATGCAATCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGCAGGGCGACCAGCAAATCACGCGACTCCTGTGATAAGCGCAATCAAGACAGTCAAGCATTTGGTAAATGATTGCAGCTTTACAGACATCTTGCTGACGGCATTTGCCACGAGTCTTGGGGCGTACTGCAGGCGGAAGAGCTTACCCGTGCCAACGGCCGTCACTATCGGTCAGATGCGA ] [+] EMBL BM638899 [ cCGCTCAACGGCTGTATTTAAAACGTTGCCAATAGGCAGTCTGCCATGCGGATCGAGCACAATCGACCAGCTCATATGCCAGATAAATGCTGTAAAAGGTCCAGACGACGCATTTCAGGCCAGTACAGATGCTTTAATTACTCACCTGAGCGTGTCGTACCTTCCAGAGCTACTGCCGGCTGCAGTTGTACGGGCATTATTTGCTAGAAGCAAGTTTTCGATTGCTCTGTCCAACATTCCTGCCTTCGTCGGCACTGTCTCTCTGGAAAGGTACATTCTCCGAGAGGCCACATTCTGGGTACCCAACATTGAGCGCAATCTGTTCGGGTTGACCTTACTGACAACGGACGGCCGCCTACAGATAGGTTCAATCGCTGATAGGACAATAATTAAGGATGAAGAAGAACTCGAACAAATACTTAACGAAACATTGCAGGAGCTAAGCAATATGGCGTGCATGATAAAATGCAACTAAATATCTTTTACGTGAAACAGACCTTATGTAAGTGTGAACTGACTGGGATAA] consensusID : consensus_6196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CCGAATTATTGACTAGCGGGAGTGGATTTGTGTACGATGAAACACTCTAAACGGATTGTTTCACTTTTGACGAACACAGTGCTGCTGGTTGGGATTATATTGGCTTTACCTGTGATAATAGCAATCTTGGTGTTGTTTCAAGTGCATCGACAAATAGTGGCGCAATTGCTGGCGATTAAATATGGCTCATCGTTCCGTGGGCTGCTGCAAGGATCGGATGTGGTGTGGGCAGGGCAGGAACGATCATCCAAGGCAGTGGCAAGCGTGTTGCTTCTGTTTGAGAAACCTGTGCATGTGTCAGACGACAGCGTGCATTTGCTGGAGCTGTTTCGTGATCGATTCAAACGTCTCCACACAGTTGATGCGTATCAGAAATTGTTCTGGCAAAGGCGCATTCAGTGGGGTTACTATTTTTGGATCAAACAGGGACTTCCGCTTTGGAGCGATCGTTACGTCAAACAGCTCGACGTGATTCCCACCAGCAGCAGCTGCCTTTCCAAAAGGCAACTTTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTGAGAGCGCAACAGTCTCGTTGTTTCGTTCGCAATTGTACTTGTGCTAATGT] [+] EMBL BM578635 [CCGAATTATTGACTAGCGGGAGTGGATTTGTGTACGATGAAACACTCTAAACGGATTGTTTCACTTTTGACGAACACAGTGCTGCTGGTTGGGATTATATTGGCTTTACCTGTGATAATAGCAATCTTGGTGTTGTTTCAAGTGCATCGACAAATAGTGGCGCAATTGCTGGCGATTAAATATGGCTCATCGTTCCGTGGGCTGCTGCAAGGATCGGATGTGGTGTGGGCAGGGCAGGAACGATCATCCAAGGCAGTGGCAAGCGTGTTGCTTCTGTTTGAGAAACCTGTGCATGTGTCAGACGACAGCGTGCATTTGCTGGAGCTGTTTCGTGATCGATTCAAACGTCTCCACACAGTTGATGCGTATCAGAAATTGTTCTGGCAAAGGCGCATTCAGTGGGGTTACTATTTTTGGATCAAACAGGGACTTCCGCTTTGGAGCGATCGTTACGTCAAACAGCTCGACGTGATTCCCACCAGCAGCAGCTGCCTTTCCAAAAGGCAACTTTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTGAGAGCGCAACAGTCTCGTTGTTTCGTTCGCAATTGTACTTGTGCTAATGT] consensusID : consensus_6196#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CCGTGCTGGAGCTGTTTCGTGATCGATTCAAACGTCTCCACACAGTTGATGCGTATCAGAAATTGTTCTGGCAAAGGCGCATTCAGTGGGGTTACTATTTTTGGATCAAACAGGGACTTCCGCTTTGGAGCGATCGTTACGTCAAACAGCTCGACGTGATTCCCACCAGCAGCAGCTGCCTTTCCAAAAGGCAACTTTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTCGAACGTTCTGCAAAGAATTTCTCGACAGTACGGCCACGGCGGAGGAACACGTGTGGAATCCAAATGCGGCCAATCAGACCTCGGTGAATGGTTTTTTCACTTGGCGCAATCTCTTCCGTATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTGCTCAAACGGGAATGCAGTCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGCAGGGCGACCAGCAAATCACGCGACTCCTGTGATAAGCGCAATCAAGACAGTCAAGCATTTGGTAAATGATTGCAGCTTTACAG] [+] EMBL BM626340 [CCGTGCTGGAGCTGTTTCGTGATCGATTCAAACGTCTCCACACAGTTGATGCGTATCAGAAATTGTTCTGGCAAAGGCGCATTCAGTGGGGTTACTATTTTTGGATCAAACAGGGACTTCCGCTTTGGAGCGATCGTTACGTCAAACAGCTCGACGTGATTCCCACCAGCAGCAGCTGCCTTTCCAAAAGGCAACTTTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTCGAACGTTCTGCAAAGAATTTCTCGACAGTACGGCCACGGCGGAGGAACACGTGTGGAATCCAAATGCGGCCAATCAGACCTCGGTGAATGGTTTTTTCACTTGGCGCAATCTCTTCCGTATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTGCTCAAACGGGAATGCAGTCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGCAGGGCGACCAGCAAATCACGCGACTCCTGTGATAAGCGCAATCAAGACAGTCAAGCATTTGGTAAATGATTGCAGCTTTACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6196#0 ------------------------------------------------------------ consensus_6196#2 CCGTGCTGGAGCTGTTTCGTGATCGATTCAAACGTCTCCACACAGTTGATGCGTATCAGA 60 consensus_6196#1 ------------------------------------------------------------ consensus_6196#0 ------------------------------------------------------------ consensus_6196#2 AATTGTTCTGGCAAAGGCGCATTCAGTGGGGTTACTATTTTTGGATCAAACAGGGACTTC 120 consensus_6196#1 ------------------------------------------------------------ consensus_6196#0 ------------------------------------------------------------ consensus_6196#2 CGCTTTGGAGCGATCGTTACGTCAAACAGCTCGACGTGATTCCCACCAGCAGCAGCTGCC 180 consensus_6196#1 -------------------------------------------------CCGAATTATTG 11 consensus_6196#0 --------AGGCAACTCTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTA 52 consensus_6196#2 TTTCCAAAAGGCAACTTTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTA 240 consensus_6196#1 ACTAGCGGGAGTGGATTTGTGTACGATGAAACACTCTAAACGGATTGTTTCACTTTTG-A 70 * * **** ** * * * * * * * * * * * * consensus_6196#0 CGAGCTGGGAGTTGCTCGTTGGAAG-ACAACCATTATGCC-ACGACGACAGCACTGT-AA 109 consensus_6196#2 CGAGCTGGGAGTTGCTCGTTGGAAG-ACAACCATTATGCC-ACGACGACAGCACTGT-AA 297 consensus_6196#1 CGAACACAGTGCTGCTGGTTGGGATTATATTGGCTTTACCTGTGATAATAGCAATCTTGG 130 *** * * * **** ***** * * * * * ** ** * **** * * consensus_6196#0 TGCTGTACCCGGTCCTTTTCAGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTC 169 consensus_6196#2 TGCTGTACCCGGT-----------ACCATCATTCAATCGCTGATGGAATTGCAATATTTC 346 consensus_6196#1 TGTTGTTTCAAGT------------GCATCGACAAATAG-TGGCGCAATTGCTGGCGATT 177 ** *** * ** **** *** * ** * ****** * consensus_6196#0 GAACGTTCTGCAAAGAATTCCTCGACAGTACGGGCACGGCGGAGGAACACGTGTGGAATC 229 consensus_6196#2 GAACGTTCTGCAAAGAATTTCTCGACAGTACGGCCACGGCGGAGGAACACGTGTGGAATC 406 consensus_6196#1 AAATATG--GCTCATCGTTCCGTGG-GCTGCTGCAAGGATCGGATGTGGTGTGGGCAGGG 234 ** * ** * ** * * * * * * * * *** * * consensus_6196#0 CAAATGCGGCCAATCA-GACCTCGGTGAAAG-GTTTTTTCACTTGGCGCAATCTCTTCCG 287 consensus_6196#2 CAAATGCGGCCAATCA-GACCTCGGTGAATG-GTTTTTTCACTTGGCGCAATCTCTTCCG 464 consensus_6196#1 CAGGAACGATCATCCAAGGCAGTGGCAAGCGTGTTGCTTCTGTTTGAGAAACCTGTGC-A 293 ** ** ** ** * * ** * * *** *** ** * * ** ** * * consensus_6196#0 TATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTACTCAAACGGGAATGCAA 347 consensus_6196#2 TATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTGCTCAAACGGGAATGCAG 524 consensus_6196#1 TGTGTCAGACGACAGCGTGCATTTGCTGG------AGCTGTTTCGTGATCG---ATTCAA 344 * ** * ** * * ** *** * * ** * * ** ** ** consensus_6196#0 TCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGC 407 consensus_6196#2 TCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGC 584 consensus_6196#1 ACGTCTCCACACAGTTGATGCG---TATCAGAAATTGTTCTGGCAAAGGCGCATTCA-GT 400 * ** ** ** * ** * *** * **** ** ** * consensus_6196#0 AGGGCGACCAGC---AAATCACGC---GACTCCGGCGATAAGCGCAATCAAGACAGTCAA 461 consensus_6196#2 AGGGCGACCAGC---AAATCACGC---GACTCCTGTGATAAGCGCAATCAAGACAGTCAA 638 consensus_6196#1 GGGGTTACTATTTTTGGATCAAACAGGGACTTCCGCTTTGGA-GCGATCGTTAC-GTCAA 458 *** ** * **** * **** * * * ** *** ** ***** consensus_6196#0 GCATTTGGTAAATGATTGCAGCT--TTACAGACATCTTGCTGACGGC--ATTTGCCACGA 517 consensus_6196#2 GCATTTGGTAAATGATTGCAGCT--TTACAG----------------------------- 667 consensus_6196#1 ACAGCTCG-ACGTGATTCCCACCAGCAGCAGCTGCCTTTCCAAAAGGCAACTTTGTGCAC 517 ** * * * ***** * * *** consensus_6196#0 GTCTTGGGGCGTACTGCAGGCGGAAGCGC--TTACCCGTGCCAACGACCG-TCACTATCG 574 consensus_6196#2 ------------------------------------------------------------ consensus_6196#1 TAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAA 577 consensus_6196#0 GGCAGATGCGACGGTTCCATCGCGAGTCTGAAGTAATACAGCTGCGTAATCGCTCAACGG 634 consensus_6196#2 ------------------------------------------------------------ consensus_6196#1 GACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCG-GTGAGAGCGCAACAG 636 consensus_6196#0 CTGTATTTAAATCGTTGCCAATAGGCAGTCTGCCA-TGCGGATCGAGCACNATCGACCAG 693 consensus_6196#2 ------------------------------------------------------------ consensus_6196#1 TCTCGTT-GTTTCGTTCGCAATTGTACTTGTGCTAATGT--------------------- 674 consensus_6196#0 CTCATATGCCAGATAAATGCTGTAAAAGGTCCAGACGACGCATTTCAGGCCAGTACAGAT 753 consensus_6196#2 ------------------------------------------------------------ consensus_6196#1 ------------------------------------------------------------ consensus_6196#0 GCTTTAATTACTCACCTGAGCGTGTCGTACCTTCCAGAGCTACTGCCGGCTGCAGTTGTA 813 consensus_6196#2 ------------------------------------------------------------ consensus_6196#1 ------------------------------------------------------------ consensus_6196#0 CGGGCATTATTTGCTAGAAGCAAGTTTTCGATTGCTCTGTCCAACATTCCTGCCTTCGTC 873 consensus_6196#2 ------------------------------------------------------------ consensus_6196#1 ------------------------------------------------------------ consensus_6196#0 GGCACTGTCTCTCTGGAAAGGTACATTCTCCGAGAGGCCACATTCTGGGTACCCAACATT 933 consensus_6196#2 ------------------------------------------------------------ consensus_6196#1 ------------------------------------------------------------ consensus_6196#0 GAGCGCAATCTGTTCGGGTTGACCTTACTGACAACGGACGGCCGCCTACAGATAGGTTCA 993 consensus_6196#2 ------------------------------------------------------------ consensus_6196#1 ------------------------------------------------------------ consensus_6196#0 ATCGCTGATAGGACAATAATTAAGGATGAAGAAGAACTCGAACAAATACTTAACGAAACA 1053 consensus_6196#2 ------------------------------------------------------------ consensus_6196#1 ------------------------------------------------------------ consensus_6196#0 TTGCAGGAGCTAAGCAATATGGCGTGCATGATAAAATGCAACTAAATATCTTTTACGTGA 1113 consensus_6196#2 ------------------------------------------------------------ consensus_6196#1 ------------------------------------------------------------ consensus_6196#0 AACAGACCTTATGTAAGTGTGAACTGACTGGGATAA 1149 consensus_6196#2 ------------------------------------ consensus_6196#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||