These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1070 fasta sequence [TTTTGTTTGCATCTCCACGTATGTTGTTTAAAGCGTTAGATTATGGAGATCTAACTTACGAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGATGCAATTTTTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAATATTCGCTGGCAAGTGGTAAACCCTGCAGTGCATTAGCCAGTTCGGCACGTAACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTACTTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGCTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCA-CTCCGAGTCGATGGTTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGG--CCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTCAAATTGGGGTGTTTCTGGCGCACTCCTTCGCGGTGCTTGTTCATGTACCGAACGTATCCAGTAAGCGGATGTTTCGGTGCATTTGCAT-CTTCGGAGCTTTTTGCCTTTTTTTCTTCGTGGTCTTCGGTGCCGACTGTTTACCCTTTGTTCCACTGCCGGACGGTGAACGCGTTGCTTGTTTCAGGGGCTTTTCCTTCATTTTTACCTGCATCCGTTGGTTTCAATTCCTGCTTCAAATCATCCTGATTGGCTACTGCTGACTTTTTATCTAATCCTTCCGGTTTTTCCTTTTCCATTGAAAGCGAAACTGTTGATAAAATTGGTAATCCTTTTCCCTGCTGTTTTGTTTGTATGCACACCCAGTA] [+] EMBL CNS09G35 [TTTTGTTTGCATCTCCACGTATGTTGTTTAAAGCGTTAGATTATGGAGATCTAACTTACGAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGATGCAATTTTTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAATATTCGCTGGCAAGTGGTAAACCCTGCAGTGCATTAGCCAGTTCGGCACGTAACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTACTTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGCTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCA CTCCGAGTCGATGGTTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGG CCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTAAAATTGGGGTGTTTCTGGCGCACTCCTTCGCGGTGCTTG ] [+] EMBL CNS09PSZ [ AGCGTTAGATTATGGAGATCTAACTTACGAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGATGCAATTTTTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAATATTCGCTGGCAAGTGGTAAACCCTGCAGTGCATTAGCCAGTCCGGCACGTAACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTACTTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGCTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCA CTCCGAGTCGATGGTTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGG CCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTCAAATTGGGGTGTTTCTGGCGCACTCCTTCGCGGTGCTCGTTCATGTACCGAACGTATCCAGTAAGCGGATGTTTCGGTGCATTTGCATCCTTCGGAGCTTTTTGCCTTTTTTTCTTCGTGGTCTTCGGTGCCGACTGTTTACCCTTTGTTCCACTGCC ] [-] EMBL CNS09PSY [ ACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTACTTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGCTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCAGCTCCGAGTCGATGGTTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGGACCCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTCAAATTGGGGTGTTTCTGGCGCACTCCTTCGCGGTGCTCGTTCATGTACCGAACGTATCCAGTAAGCGGATGTTTCGGTGCATTTGCAT CTTCGGAGCTTTTTGCCTTTTTTTCTTCGTGGTCTTCGGTGCCGACTGTTTACCCTTTGTTCCACTGCCGGACGGTGAACGCGTTGCTTGTTTCAGGGGCTTTTCCTTCATTTTTACCTGCATCCGTTGGTTTCAATTCCTGCTTCAAATCATCCTGATTGGCTACTGCTGACTTTTTATCTAATCCTTCCGGTTTTTCCTTTTCCATTGAAAGCGAAACTGTTGATAAAATTGGTAATCCTTTTCCCTGC ] [-] EMBL CNS09G34 [ TAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGG CCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGC TTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTCAAATTGGGGTGTTTCTGGCGCACTCCTTCGCGGTGCTTGTTCATGTACCGAACGTATCCAGTAAGCGGATGTTTCGGTGCATTTGCAT CTTCGGAGCTTTTTGCCTTTTTTTCTTCGTGGTCTTCGGTGCCGACTGTTTACCCTTTGTTCCACTGCCGGACGGTGAACGCGTTGCTTGTTTCAGGGGCTTTTCCTTCATTTTTACCTGCATCCGTTGGTTTCAATTCCTGCTTCAAATCATCCTGATTGGCTACTGCTGACTTTTTATCTAATCCTTCCGGTTTTTCCTTTTCCATTGAAGGCGAAACTGTTGATAAAATTGGTAATCCTTTTCCCTGCTGTTTTGTTTGTATGCACACCCAGTA] consensusID : consensus_6202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [GTTTAAAGCGTTAGATTATGGAGATCTAACTTACGGAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGATGCAATTTCTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAGTATTCGCTGGCAAGAGGTAAACCCTGCAGTGCATTAGACAGTGCGGCACGTAACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTATTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGTTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCAGCTCCGAGTCGATGATTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGGCCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGGACGCGTGGGCGG] [-] EMBL BM607776 [GTTTAAAGCGTTAGATTATGGAGATCTAACTTACGGAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGATGCAATTTCTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAGTATTCGCTGGCAAGAGGTAAACCCTGCAGTGCATTAGACAGTGCGGCACGTAACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTATTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGTTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCAGCTCCGAGTCGATGATTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGGCCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6202#0 TTTTGTTTGCATCTCCACGTATGTTGTTTAAAGCGTTAGATTATGGAGATCTAACTTACG 60 consensus_6202#1 -------------------------GTTTAAAGCGTTAGATTATGGAGATCTAACTTACG 35 *********************************** consensus_6202#0 -AATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGAT 119 consensus_6202#1 GAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGAT 95 *********************************************************** consensus_6202#0 GCAATTTTTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAATATTCGCTGGCAA 179 consensus_6202#1 GCAATTTCTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAGTATTCGCTGGCAA 155 ******* ************************************** ************* consensus_6202#0 GTGGTAAACCCTGCAGTGCATTAGCCAGTTCGGCACGTAACTTTTTTAGATAATTCTCTA 239 consensus_6202#1 GAGGTAAACCCTGCAGTGCATTAGACAGTGCGGCACGTAACTTTTTTAGATAATTCTCTA 215 * ********************** **** ****************************** consensus_6202#0 AAACAACATTCTGTGCTTCCAGGCTACTTTTTTCGCCATCTAGCTTTTGAATACCATTTT 299 consensus_6202#1 AAACAACATTCTGTGCTTCCAGGCTA-TTTTTTCGCCATCTAGCTTTTGAATACCATTTT 274 ************************** ********************************* consensus_6202#0 CCATGTTTTCGACGTGCTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATT 359 consensus_6202#1 CCATGTTTTCGACGTGTTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATT 334 **************** ******************************************* consensus_6202#0 TGCGCAACGTGCGCA-CTCCGAGTCGATGGTTTTGTTGTGATCAAGAAAGTCCTCCGTAA 418 consensus_6202#1 TGCGCAACGTGCGCAGCTCCGAGTCGATGATTTTGTTGTGATCAAGAAAGTCCTCCGTAA 394 *************** ************* ****************************** consensus_6202#0 AAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACAT 478 consensus_6202#1 AAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACAT 454 ************************************************************ consensus_6202#0 ATGGAATAGACGATATGACTACTTTTGGCCCCGTCACCTCTTTTTTTGCTACTTGCGACT 538 consensus_6202#1 ATGGAATAGACGATATGACTACTTTTGGCCCCGTCACCTCTTTTTTTGCTACTTGCGACT 514 ************************************************************ consensus_6202#0 CGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTAT 598 consensus_6202#1 CGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTAT 574 ************************************************************ consensus_6202#0 TGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACA 658 consensus_6202#1 TGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACA 634 ************************************************************ consensus_6202#0 ATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTCAAATTGGGGTGTT 718 consensus_6202#1 ATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCG---GACGCGTGGGCGG------ 685 ************************************** * ** ** consensus_6202#0 TCTGGCGCACTCCTTCGCGGTGCTTGTTCATGTACCGAACGTATCCAGTAAGCGGATGTT 778 consensus_6202#1 ------------------------------------------------------------ consensus_6202#0 TCGGTGCATTTGCATCTTCGGAGCTTTTTGCCTTTTTTTCTTCGTGGTCTTCGGTGCCGA 838 consensus_6202#1 ------------------------------------------------------------ consensus_6202#0 CTGTTTACCCTTTGTTCCACTGCCGGACGGTGAACGCGTTGCTTGTTTCAGGGGCTTTTC 898 consensus_6202#1 ------------------------------------------------------------ consensus_6202#0 CTTCATTTTTACCTGCATCCGTTGGTTTCAATTCCTGCTTCAAATCATCCTGATTGGCTA 958 consensus_6202#1 ------------------------------------------------------------ consensus_6202#0 CTGCTGACTTTTTATCTAATCCTTCCGGTTTTTCCTTTTCCATTGAAAGCGAAACTGTTG 1018 consensus_6202#1 ------------------------------------------------------------ consensus_6202#0 ATAAAATTGGTAATCCTTTTCCCTGCTGTTTTGTTTGTATGCACACCCAGTA 1070 consensus_6202#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||