These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 988 fasta sequence [AGGACGCACTGGAATCACCGTTTGTCGATGATACGTTCGCGCCAACCGGAGGTCGAAGTAGAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAANAAGGGTTAGATGAGGTCGATGATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACNAGTGTAACGGACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATTCCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTC-GGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAG-AAGGATGCAAACGTGGCGCTAGACAAGCT-GGTGACGTACATCCCAACGCCACACACCGTGCGGGCGATATCGAACCGGGGCACCATGTAAGTGGCTGTAGAGCGACCAGTGATGCTTCCGGTTGTGTC--TCCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCTGCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGGACCACGGCAAACACACGAACGCGCAAAACCATCCTTACGATGTTGGCCAAGTTTTTAACGGATAAAAATCTAGAAACCAGGAAGTTTGGTGAACGGTTATATCGCATGTTGCGCAAGCACAAGTTTTTTGACGAGTATTTCTACAAGGATATGGATAACAACT] [+] EMBL BX624828 [AGGACGCACTGGAATCACCGTTTGTCGATGATACGTTCGCGCCAACCGGAGGTCGAAGTAGAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAANAAGGGTTAGATGAGGTCGATGATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACNAGTGTAACGGACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATTCCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTCNNGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGACGANATGGTCGACATACTGCTGTGCNAGACGGCCGACCCGAATCGCTTCATACAG AAGGATGCAAACGTGGCGCTAGACAAGCT GGTGACGTACATCCCNACGNCACACACCGTGCGGGCGATATCGAACCGGNGCACCATGTAAGTGGCTGTAGAGCGACCAGTGATGCTTNCGGTTGTGTC TCCACCGC ] [+] EMBL BX624954 [ GCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTC GGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAG AAGGATGCAAACGTGGCGCTAGACAAGCT GGTGACGTACATCCCAACGCCACACACCGTGCGGGCGATATCGAACCGGGGCACCATGTAAGTGGCTGTAGAGCGACCAGTGATGCTTCCGGTTGTGTCTGTCCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCTGCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGGACCACGGCAAACACACGAACGCGCAAAACCATCCTTACGATGTTGGCCAAGTTTTTAACGGATAAAAATCTAGAAACCAGGAAGTTTGGTGAACGGTTATATCGCATGTTGCGCAAGCACAAGTTTTTTGACGAGTATTTCTACAAGGATATGGATAACAACT] [+] EMBL BX619582 [ CCGGTACGAAAGAGGGGCCGGTCAGCNTTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTC GGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAGAAAGGATGCAAACGTGGCGCTAGACAAGCTGGGTGACGTACATCCCAACGCCACACACCGTGCGGGCGATATCGAACCGGGGCACCATGTAAGTGGCTGTAGAGCGACCAGTGATGCTTCCGGTNNTGTC Tg ] consensusID : consensus_6213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence [ATCCCCCGAGGTTAATGTCGATGATACGTTCGCGCCAACTGGAGGTCGAAGTAGAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAAGAAGGGTTAGATGAGGTCGATGATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACGAGTGTAACGGACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATTCCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTCGGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAGAAGGATGCAAACGTGGCGCTAGACAAGCTGGTGACGTACATCCCAACGCCACACACCGTGCGGGCGATATCGAAACCGGGGCACCATCCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCTGCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGG] [+] EMBL AL933128 [ATCCCCCGAGGTTAATGTCGATGATACGTTCGCGCCAACTGGAGGTCGAAGTAGAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAAGAAGGGTTAGATGAGGTCGATGATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACGAGTGTAACGGACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATTCCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTCGGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAGAAGGATGCAAACGTGGCGCTAGACAAGCTGGTGACGTACATCCCAACGCCACACACCGTGC ] [+] EMBL BX626353 [ TGACGAAGAAGGGTTAGATGAGGTCGATGATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACGAGTGTAACGGACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATTCCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTCGGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAGAAGGATGCAAACGTGGCGCTAGACAAGCTGGTGACGTACATCCCAACGCCACACACCGTGCGGGCGATATCGAAACCGGGGCACCATCCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCTGCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6213#0 AGGACGCACTGGAATCACCGTTTGTCGATGATACGTTCGCGCCAACCGGAGGTCGAAGTA 60 consensus_6213#1 ---ATCCCCCGAGGTTAA----TGTCGATGATACGTTCGCGCCAACTGGAGGTCGAAGTA 53 * * * * * * ************************ ************* consensus_6213#0 GAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAANAAGGGTTAGATGAGGTCGATG 120 consensus_6213#1 GAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAAGAAGGGTTAGATGAGGTCGATG 113 ************************************** ********************* consensus_6213#0 ATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACNAGTGTAACG 180 consensus_6213#1 ATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACGAGTGTAACG 173 ************************************************** ********* consensus_6213#0 GACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATT 240 consensus_6213#1 GACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATT 233 ************************************************************ consensus_6213#0 CCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAG 300 consensus_6213#1 CCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAG 293 ************************************************************ consensus_6213#0 AGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTT 360 consensus_6213#1 AGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTT 353 ************************************************************ consensus_6213#0 GCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGG 420 consensus_6213#1 GCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGG 413 ************************************************************ consensus_6213#0 AAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGG 480 consensus_6213#1 AAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGG 473 ************************************************************ consensus_6213#0 CACTGTGCCGTTCGGCGTGTCAGGTGTCGGGCGAATTGTTTCGGCAGGCCAAGTCGACGA 540 consensus_6213#1 CACTGTGCCGTTCGGCGTGTCAGGTGTCGGGCGAATTGTTTCGGCAGGCCAAGTCGACGA 533 ************************************************************ consensus_6213#0 AACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATC 600 consensus_6213#1 AACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATC 593 ************************************************************ consensus_6213#0 GCTTCATACAGAAGGATGCAAACGTGGCGCTAGACAAGCTGGTGACGTACATCCCAACGC 660 consensus_6213#1 GCTTCATACAGAAGGATGCAAACGTGGCGCTAGACAAGCTGGTGACGTACATCCCAACGC 653 ************************************************************ consensus_6213#0 CACACACCGTGCGGGCGATATCGAA-CCGGGGCACCATGTAAGTGGCTGTAGAGCGACCA 719 consensus_6213#1 CACACACCGTGCGGGCGATATCGAAACCGGGGCACCAT---------------------- 691 ************************* ************ consensus_6213#0 GTGATGCTTCCGGTTGTGTCTCCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCT 779 consensus_6213#1 ---------------------CCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCT 730 *************************************** consensus_6213#0 GCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGGACCACGGCAAACAC 839 consensus_6213#1 GCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGG-------------- 776 ********************************************** consensus_6213#0 ACGAACGCGCAAAACCATCCTTACGATGTTGGCCAAGTTTTTAACGGATAAAAATCTAGA 899 consensus_6213#1 ------------------------------------------------------------ consensus_6213#0 AACCAGGAAGTTTGGTGAACGGTTATATCGCATGTTGCGCAAGCACAAGTTTTTTGACGA 959 consensus_6213#1 ------------------------------------------------------------ consensus_6213#0 GTATTTCTACAAGGATATGGATAACAACT 988 consensus_6213#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||