These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 917 fasta sequence [CCGTACAAGTTGTGTTTTGCTCGAGAGAG-AACTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCACCTGCCCGACTATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAACTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACGTCCGTCCTGGTGGATGGGAAGTTTTTCATCCACGACGACGGCATGGTGGTGGAAGTGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACGCTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAGAACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAAAGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCA-CGACCTACCTTGCCCACAACGGTGTGGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAGGTGCTCGAGCTGGGCCAGCGTTACCTGGATGTTATCGATTTCGACAGCTTCCTGGAGGAGTGGAACTAGCAGCGAAA] [+] EMBL BM577234 [CCGTACAAGTTGTGTTTTGCTCGAGAGAGCAACTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCACCTGCCCGACTATTTGGTGTTTACGAAACAGTTTGCGCTGCACGTGCAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAACTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACGTCCGTCCTGGTGGATGGGAAGTTTTTCATCCACGACGACGGCATGGTGGTGGAAGTGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACGCTGTTTCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAAAACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCAAGTCGCCCACGAAGAAGTTGCCCACCTGAAGCAGCTCCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATG ] [+] EMBL CNS09NBQ [ TTTTGCTCGAGAGAG AACTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCATCTGCCCGAATATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAGCTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACCTCCGTCCTGGTGGATGGGAAATTTTTCATCCACGACGACGGCATGGTGGTGGAAGAGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACGCTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAGAACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTGGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAAAGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCA CGACCTACCTTGCCCACAACGGTGTGGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAGGTGCTCGAGCTGGGCCAGCGTTACCTGGATGTTATCGATTTCGACAGCTTCCTGGAGGAGTGGAACTAGCAGCGAAA] [+] EMBL BX627076 [ TCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATACACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGNGNTTAGCATTAGTGCGCCTCGCCTGGGCCCAGGAAGATGTTCACCTGCCCGACTATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGAGACAGTCCGCTGATCGAGACGTTCGGGCTGGAACTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACGTCCGTCCTGGTGGATGGGAAGTTTTTCATCCACGGCGACGGCATGGTGGTGGAAGTGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACGCTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAGAACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGANGGTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACCTAAAGTCGCGCCTGTTTCAAGTGGA GCACTGCGACCGCTGGTCAACAGTGTCGTCACCAACCTACCTTGCAC CATGGGTGTCGGCTTCCGTATGTATAC CTGC ] consensusID : consensus_6222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 843 fasta sequence [CGCGCGCGCCCTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCATCTGCCCGAATATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTACAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAGCTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACCTCCGTCCTGGTGGA-TGG---GA-AATTTTTCATCCACGACGACGGCATGGTGGTG-G-A-AG-AGGGTGACACGATTCGCTATCGCTTCA-TGGTTACGCACAAGAAAACGCTGTTCCAC-AGCAATTTCCGTCGGATTCTCGTAACA-GATCA-TCTA-TTCTATCGCCCGAAGAACAA-C-TATTGCTTCTCGCAGTGCCTGGTAGGCGA-TCA-GCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAA-AGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCACGACCTACCTTGCCCACAACGGTGTCGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAGGTGCTCGAGCTGGGCCAACCGTAC] [+] EMBL CNS09BYX [CGCGCGCGCCCTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCATCTGCCCGAATATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTACAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAGCTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACCTCCGTCCTGGTGGA TGG GA AATTTTTCATCCACGACGACGGCATGGTGGTG G A AG AGGGTGACACGATTCGCTATCGCTTCA TGGTTACGCACAAGAAAACGCTGTTCCAC AGCAATTTCCGTCGGATTCTCGTAACA GATCA TCTA TTCTATCGCCCGAAGAACAA C TATTGCTTCTCGCAGTGCCTGGTAGGCGA TCA GCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAA AGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCACGACCTACCTTGCCCACAACGGTGTCGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAGGTGCTCGAGCTGGGCCAACCGTAC] [+] EMBL AL933034 [ gtttaacaCTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCATCTGCCCGAATATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAGCTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACCTCCGTCCTGGTGGACTGGCCACACACTTTTTCATCCACGACGACGGCATGGTGGTGNGCACAGCAGGGTGACACGATTCGCTATCGCTTCACTGGTTACGCACAAGAAAACGCTGTTCCACGAGCAATTTCCGTCGGATTCTCGTAACACGATCAGTCTAGTTCTATCGCCCGAAGAACAAGCGTATTGCTTCTCGCAGTGCCTGGTAGGCGACTCAGGCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAACAGTCGCGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6222#0 CCGTACAAGTTGTGTTTTGCTCGAGAGAGAACTTTCTCGTTCGTAAGCGTTGCACGGACA 60 consensus_6222#1 ---------------------CGCGCGCGCCCTTTCTCGTTCGTAAGCGTTGCACGGACA 39 ** * * * ***************************** consensus_6222#0 AACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACG 120 consensus_6222#1 AACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACG 99 ************************************************************ consensus_6222#0 ATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAG 180 consensus_6222#1 ATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAG 159 ************************************************************ consensus_6222#0 GAAGATGTTCACCTGCCCGACTATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAG 240 consensus_6222#1 GAAGATGTTCATCTGCCCGAATATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTACAG 219 *********** ******** *********************************** *** consensus_6222#0 GTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTC 300 consensus_6222#1 GTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTC 279 ************************************************************ consensus_6222#0 GGGCTGGAACTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGA 360 consensus_6222#1 GGGCTGGAGCTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGA 339 ******** *************************************************** consensus_6222#0 CAGCTGCTCGTCAACACGTCCGTCCTGGTGGATGGGAAGTTTTTCATCCACGACGACGGC 420 consensus_6222#1 CAGCTGCTCGTCAACACCTCCGTCCTGGTGGATGGGAAATTTTTCATCCACGACGACGGC 399 ***************** ******************** ********************* consensus_6222#0 ATGGTGGTGGAAGTGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACG 480 consensus_6222#1 ATGGTGGTGGAAGAGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACG 459 ************* ********************************************** consensus_6222#0 CTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAG 540 consensus_6222#1 CTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAG 519 ************************************************************ consensus_6222#0 AACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGAGGTT 600 consensus_6222#1 AACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGAGGTT 579 ************************************************************ consensus_6222#0 ACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCC 660 consensus_6222#1 ACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCC 639 ************************************************************ consensus_6222#0 GAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTAC 720 consensus_6222#1 GAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTAC 699 ************************************************************ consensus_6222#0 GTAAAGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCACG 780 consensus_6222#1 GTAAAGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCACG 759 ************************************************************ consensus_6222#0 ACCTACCTTGCCCACAACGGTGTGGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAG 840 consensus_6222#1 ACCTACCTTGCCCACAACGGTGTCGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAG 819 *********************** ************************************ consensus_6222#0 GTGCTCGAGCTGGGCCAGCGTTACCTGGATGTTATCGATTTCGACAGCTTCCTGGAGGAG 900 consensus_6222#1 GTGCTCGAGCTGGGCCAACCGTAC------------------------------------ 843 ***************** * *** consensus_6222#0 TGGAACTAGCAGCGAAA 917 consensus_6222#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||