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Anopheles gambiae
cluster # 6236 cluster # 6236       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6236#0 length = 799 sequences # 1  
consensus_6236#1 length = 665 sequences # 2  
consensus_6236#2 length = 619 sequences # 2  

consensusID : consensus_6236#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 799
fasta sequence
                              [ATGCNGAGGCAGAATCCCCGAGGTTAAATGTAGTTGCGATACACAGCTATTAAATGCGACCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTTNGTGCACTCGTTAGTATCAAATCGATTTACGCGAACAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCTCGGGCTAGCTATTTATTTTAACCCCGGAACCGGAAGGTTATNTGGTTATGTCNAACACCACGGTTAACCAATTCCCAATTCCAAAAAACCCAACNTAAAACCAACTTGGGTTTAATTTCCCCAGGCCGGGTTTTCCCCCGGTTGAATTCCCTTTTTAAAACCGGGTTTTCTGGGGGACCACACACACTTTTGGGACAAACACAAGGCGCTTTGGGGGTTTTTCAACCACACAAAGGGGTTGGGAAAAAAANGGACAATTTAACCAACNGGGAANCGACAAACCNGGTTGTGACATTCCAACCGCTGGGTGAGCTTAACACCACCGGAACTTTTTGGGGAGTTGGAGAAGACCCTGNCATTGAAAAAGACGANCCGCGGTGTGCTTCACAACGAACANCTTTTACTTTACCATTTTTTACACAACAGCNCGTTTTCAAAATTGTCCTTTCTTGGAATTCACCCCCCCCGGGGGAGCTTTTTGGNGCACAACGNGGGGGGATACATGCGAGGAAGAGGCATNATTATGAGGGGAGATTGTTGCAGAAAAAGGGGTTACATATTATTCACCGAGAGGATAATGGGGATTTAGGGTTGNGAGGACNGCACT]

[+] EMBL AL696540             [ATGCNGAGGCAGAATCCCCGAGGTTAAATGTAGTTGCGATACACAGCTATTAAATGCGACCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTTNGTGCACTCGTTAGTATCAAATCGATTTACGCGAACAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCTCGGGCTAGCTATTTATTTTAACCCCGGAACCGGAAGGTTATNTGGTTATGTCNAACACCACGGTTAACCAATTCCCAATTCCAAAAAACCCAACNTAAAACCAACTTGGGTTTAATTTCCCCAGGCCGGGTTTTCCCCCGGTTGAATTCCCTTTTTAAAACCGGGTTTTCTGGGGGACCACACACACTTTTGGGACAAACACAAGGCGCTTTGGGGGTTTTTCAACCACACAAAGGGGTTGGGAAAAAAANGGACAATTTAACCAACNGGGAANCGACAAACCNGGTTGTGACATTCCAACCGCTGGGTGAGCTTAACACCACCGGAACTTTTTGGGGAGTTGGAGAAGACCCTGNCATTGAAAAAGACGANCCGCGGTGTGCTTCACAACGAACANCTTTTACTTTACCATTTTTTACACAACAGCNCGTTTTCAAAATTGTCCTTTCTTGGAATTCACCCCCCCCGGGGGAGCTTTTTGGNGCACAACGNGGGGGGATACATGCGAGGAAGAGGCATNATTATGAGGGGAGATTGTTGCAGAAAAAGGGGTTACATATTATTCACCGAGAGGATAATGGGGATTTAGGGTTGNGAGGACNGCACT]


>consensus_6236#0 ATGCNGAGGCAGAATCCCCGAGGTTAAATGTAGTTGCGATACACAGCTATTAAATGCGAC CAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTT NGTGCACTCGTTAGTATCAAATCGATTTACGCGAACAATATGGCGTATTGTCCCTAATTC TGTTGACAGCCTCGGGCTAGCTATTTATTTTAACCCCGGAACCGGAAGGTTATNTGGTTA TGTCNAACACCACGGTTAACCAATTCCCAATTCCAAAAAACCCAACNTAAAACCAACTTG GGTTTAATTTCCCCAGGCCGGGTTTTCCCCCGGTTGAATTCCCTTTTTAAAACCGGGTTT TCTGGGGGACCACACACACTTTTGGGACAAACACAAGGCGCTTTGGGGGTTTTTCAACCA CACAAAGGGGTTGGGAAAAAAANGGACAATTTAACCAACNGGGAANCGACAAACCNGGTT GTGACATTCCAACCGCTGGGTGAGCTTAACACCACCGGAACTTTTTGGGGAGTTGGAGAA GACCCTGNCATTGAAAAAGACGANCCGCGGTGTGCTTCACAACGAACANCTTTTACTTTA CCATTTTTTACACAACAGCNCGTTTTCAAAATTGTCCTTTCTTGGAATTCACCCCCCCCG GGGGAGCTTTTTGGNGCACAACGNGGGGGGATACATGCGAGGAAGAGGCATNATTATGAG GGGAGATTGTTGCAGAAAAAGGGGTTACATATTATTCACCGAGAGGATAATGGGGATTTA GGGTTGNGAGGACNGCACT



consensusID : consensus_6236#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence
                              [CCGCGGACGCGTGGGTGCGTTCGGATCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACTAAACGCGAAGCCCGCCTACCGGACGAGGTAGCTTT]

[+] EMBL BM604750             [CCGCGGACGCGTGGGTGCGTTCGGATCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACTAAACGCGAAGCCCGCCTACCGGACGAGGTAGCTTT]
[+] EMBL BM612914             [                       ccgCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACT                                   ]


>consensus_6236#1 CCGCGGACGCGTGGGTGCGTTCGGATCGTGAATGTTAGTTGCGATACACAGTATTAAATG CGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTG ATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTA ATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATC CATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGG TTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAA AGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCT ACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCAC GTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACAT CAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTAT GTGATATGCAAACTTGCCGGAAATATTACTAAACGCGAAGCCCGCCTACCGGACGAGGTA GCTTT



consensusID : consensus_6236#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 619
fasta sequence
                              [CCGCGGACGCGTGGGCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAGATCTCGTTCTAAACCAGTGATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACT]

[+] EMBL BM601240             [CCGCGGACGCGTGGGCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAGATCTCGTTCTAAACCAGTGATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACT]
[+] EMBL BM636710             [                                                                                                                                      ccgGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCA                                                                ]


>consensus_6236#2 CCGCGGACGCGTGGGCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAAT GGTTCGAGAAATATCGTACGTTTCCATCAGATCTCGTTCTAAACCAGTGATTTTTGTGCA CTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGAC AGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACT ACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGA AGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAAT ATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGG ATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGG AGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCG GGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAA ACTTGCCGGAAATATTACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6236#1      CCGCGGACGCGTGGGTGCGTTCGGATCGTGAATGTTAGTTGCGATACACAG-TATTAAAT 59
consensus_6236#2      CCGCGGACGCGTGGG-----------CGTGAATGTTAGTTGCGATACACAG-TATTAAAT 48
consensus_6236#0      ATGCNGAGGCAGAATC----CCCGAGGTTAAATGT-AGTTGCGATACACAGCTATTAAAT 55
                        ** ** **                  * ***** *************** ********

consensus_6236#1      GCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGT 119
consensus_6236#2      GCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAGATCTCGTTCTAAACCAGT 108
consensus_6236#0      GCGACC-AAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGT 114
                      ****** ********************************** ******************

consensus_6236#1      GATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAA-AATATGGCGTATTGTCCC 178
consensus_6236#2      GATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAA-AATATGGCGTATTGTCCC 167
consensus_6236#0      GATTTTNGTGCACTCGTTAGTATCAAATCGATTTACGCGAACAATATGGCGTATTGTCCC 174
                      ****** ********************************** ******************

consensus_6236#1      TAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACA 238
consensus_6236#2      TAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACA 227
consensus_6236#0      TAATTCTGTTGACAGCC-TCGGGCTAGCTATTTATTT-TAACCCCGGAACCGGAAGGTTA 232
                      ***************** *******   *  ***      *     *   *  ***   *

consensus_6236#1      TCCATCAAACACTACCACTGTA-TCAGC--GTTCCGTATCCTTAACGTTTGGAAATGAAA 295
consensus_6236#2      TCCATCAAACACTACCACTGTA-TCAGC--GTTCCGTATCCTTAACGTTTGGAAATGAAA 284
consensus_6236#0      TNTGGTTATGTCNAACACCACGGTTAACCAATTCCCAATTCCAAAAAACCCAACNTAAAA 292
                      *      *   * * ***     * * *   ****  ** *  **       *  * ***

consensus_6236#1      GCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGA 355
consensus_6236#2      GCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGA 344
consensus_6236#0      CCAACTT---GGGTTTAATTTCCCCAGGCCGGGTTTTCCCCCGGTTGAATTCCCTTTTTA 349
                       *   **    ***  *  * *   **  ** * *  *   *    ** *         *

consensus_6236#1      AAAAAAGGTTTAAAATATATTCA-GCTTATTTTGATCCCCGGCTTGAGGTGGTT---GAG 411
consensus_6236#2      AAAAAAGGTTTAAAATATATTCA-GCTTATTTTGATCCCCGGCTTGAGGTGGTT---GAG 400
consensus_6236#0      AAACCGGGTTTTCTGGGGGACCACACACACTTTTGGGACAAACACAAGGCGCTTTGGGGG 409
                      ***   *****          **  *  * ***     *   *   *** * **   * *

consensus_6236#1      TCCTTCC-CTACGCCAGATGGATTTCTACCGTTCGG-CAGTGTTCGCATCTTTGCAAT-- 467
consensus_6236#2      TCCTTCC-CTACGCCAGATGGATTTCTACCGTTCGG-CAGTGTTCGCATCTTTGCAAT-- 456
consensus_6236#0      TTTTTCAACCACACAAAGGGGTTGGGAAAAAAANGGACAATTTAACCAACNGGGAANCGA 469
                      *  ***  * ** * *   ** *    *      ** ** * *   ** *   * *    

consensus_6236#1      ---ATTGCCATTTCACGTACGAAAAGG-AGACATATTTTGCAATTTCAGA-----TCAGA 518
consensus_6236#2      ---ATTGCCATTTCACGTACGAAAAGG-AGACATATTTTGCAATTTCAGA-----TCAGA 507
consensus_6236#0      CAAACCNGGTTGTGACATTCCAACCGCTGGGTGAGCTTAACACCACCGGAACTTTTTGGG 529
                         *      * * ** * * **  *   *      **  **    * **     *  * 

consensus_6236#1      TAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAA 578
consensus_6236#2      TAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAA 567
consensus_6236#0      GAGTTGGAGAAGACCCTGNCATTGAAAAAGACGANCCGCGGTGTGCTTCACAACGAACAN 589
                       *          * *    ***  *  *   **    *  * *               * 

consensus_6236#1      TATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACTAAACGCGA 638
consensus_6236#2      TATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACT-------- 619
consensus_6236#0      CTTTTACTTTACCATTTTTTACACAACA-GCNCGTTT-TCAAAATTGTCCTTTCTTGGAA 647
                        *  * *** **     ***    * * **    **  *  ** * *   *        

consensus_6236#1      AGCCCGCCTACCGGACGAGGTAGCTTT--------------------------------- 665
consensus_6236#2      ------------------------------------------------------------
consensus_6236#0      TTCACCCCCCCCGGGGGAGCTTTTTGGNGCACAACGNGGGGGGATACATGCGAGGAAGAG 707
                                                                                  

consensus_6236#1      ------------------------------------------------------------
consensus_6236#2      ------------------------------------------------------------
consensus_6236#0      GCATNATTATGAGGGGAGATTGTTGCAGAAAAAGGGGTTACATATTATTCACCGAGAGGA 767
                                                                                  

consensus_6236#1      --------------------------------
consensus_6236#2      --------------------------------
consensus_6236#0      TAATGGGGATTTAGGGTTGNGAGGACNGCACT 799
                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)