These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence [ATGCNGAGGCAGAATCCCCGAGGTTAAATGTAGTTGCGATACACAGCTATTAAATGCGACCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTTNGTGCACTCGTTAGTATCAAATCGATTTACGCGAACAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCTCGGGCTAGCTATTTATTTTAACCCCGGAACCGGAAGGTTATNTGGTTATGTCNAACACCACGGTTAACCAATTCCCAATTCCAAAAAACCCAACNTAAAACCAACTTGGGTTTAATTTCCCCAGGCCGGGTTTTCCCCCGGTTGAATTCCCTTTTTAAAACCGGGTTTTCTGGGGGACCACACACACTTTTGGGACAAACACAAGGCGCTTTGGGGGTTTTTCAACCACACAAAGGGGTTGGGAAAAAAANGGACAATTTAACCAACNGGGAANCGACAAACCNGGTTGTGACATTCCAACCGCTGGGTGAGCTTAACACCACCGGAACTTTTTGGGGAGTTGGAGAAGACCCTGNCATTGAAAAAGACGANCCGCGGTGTGCTTCACAACGAACANCTTTTACTTTACCATTTTTTACACAACAGCNCGTTTTCAAAATTGTCCTTTCTTGGAATTCACCCCCCCCGGGGGAGCTTTTTGGNGCACAACGNGGGGGGATACATGCGAGGAAGAGGCATNATTATGAGGGGAGATTGTTGCAGAAAAAGGGGTTACATATTATTCACCGAGAGGATAATGGGGATTTAGGGTTGNGAGGACNGCACT] [+] EMBL AL696540 [ATGCNGAGGCAGAATCCCCGAGGTTAAATGTAGTTGCGATACACAGCTATTAAATGCGACCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTTNGTGCACTCGTTAGTATCAAATCGATTTACGCGAACAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCTCGGGCTAGCTATTTATTTTAACCCCGGAACCGGAAGGTTATNTGGTTATGTCNAACACCACGGTTAACCAATTCCCAATTCCAAAAAACCCAACNTAAAACCAACTTGGGTTTAATTTCCCCAGGCCGGGTTTTCCCCCGGTTGAATTCCCTTTTTAAAACCGGGTTTTCTGGGGGACCACACACACTTTTGGGACAAACACAAGGCGCTTTGGGGGTTTTTCAACCACACAAAGGGGTTGGGAAAAAAANGGACAATTTAACCAACNGGGAANCGACAAACCNGGTTGTGACATTCCAACCGCTGGGTGAGCTTAACACCACCGGAACTTTTTGGGGAGTTGGAGAAGACCCTGNCATTGAAAAAGACGANCCGCGGTGTGCTTCACAACGAACANCTTTTACTTTACCATTTTTTACACAACAGCNCGTTTTCAAAATTGTCCTTTCTTGGAATTCACCCCCCCCGGGGGAGCTTTTTGGNGCACAACGNGGGGGGATACATGCGAGGAAGAGGCATNATTATGAGGGGAGATTGTTGCAGAAAAAGGGGTTACATATTATTCACCGAGAGGATAATGGGGATTTAGGGTTGNGAGGACNGCACT] consensusID : consensus_6236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence [CCGCGGACGCGTGGGTGCGTTCGGATCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACTAAACGCGAAGCCCGCCTACCGGACGAGGTAGCTTT] [+] EMBL BM604750 [CCGCGGACGCGTGGGTGCGTTCGGATCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACTAAACGCGAAGCCCGCCTACCGGACGAGGTAGCTTT] [+] EMBL BM612914 [ ccgCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGTGATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACT ] consensusID : consensus_6236#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence [CCGCGGACGCGTGGGCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAGATCTCGTTCTAAACCAGTGATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACT] [+] EMBL BM601240 [CCGCGGACGCGTGGGCGTGAATGTTAGTTGCGATACACAGTATTAAATGCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAGATCTCGTTCTAAACCAGTGATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAATATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACT] [+] EMBL BM636710 [ ccgGATTTACGCGAAAATATGGCGTATTGTCCCTAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACATCCATCAAACACTACCACTGTATCAGCGTTCCGTATCCTTAACGTTTGGAAATGAAAGCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGAAAAAAAGGTTTAAAATATATTCAGCTTATTTTGATCCCCGGCTTGAGGTGGTTGAGTCCTTCCCTACGCCAGATGGATTTCTACCGTTCGGCAGTGTTCGCATCTTTGCAATATTGCCATTTCACGTACGAAAAGGAGACATATTTTGCAATTTCAGATCAGATAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6236#1 CCGCGGACGCGTGGGTGCGTTCGGATCGTGAATGTTAGTTGCGATACACAG-TATTAAAT 59 consensus_6236#2 CCGCGGACGCGTGGG-----------CGTGAATGTTAGTTGCGATACACAG-TATTAAAT 48 consensus_6236#0 ATGCNGAGGCAGAATC----CCCGAGGTTAAATGT-AGTTGCGATACACAGCTATTAAAT 55 ** ** ** * ***** *************** ******** consensus_6236#1 GCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGT 119 consensus_6236#2 GCGACCCAAAATGGTTCGAGAAATATCGTACGTTTCCATCAGATCTCGTTCTAAACCAGT 108 consensus_6236#0 GCGACC-AAAATGGTTCGAGAAATATCGTACGTTTCCATCAAATCTCGTTCTAAACCAGT 114 ****** ********************************** ****************** consensus_6236#1 GATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAA-AATATGGCGTATTGTCCC 178 consensus_6236#2 GATTTTTGTGCACTCGTTAGTATCAAATCGATTTACGCGAA-AATATGGCGTATTGTCCC 167 consensus_6236#0 GATTTTNGTGCACTCGTTAGTATCAAATCGATTTACGCGAACAATATGGCGTATTGTCCC 174 ****** ********************************** ****************** consensus_6236#1 TAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACA 238 consensus_6236#2 TAATTCTGTTGACAGCCCTCGGGCTGCTTTATTACCGACGAGTTTTGTTTCAAAAGTACA 227 consensus_6236#0 TAATTCTGTTGACAGCC-TCGGGCTAGCTATTTATTT-TAACCCCGGAACCGGAAGGTTA 232 ***************** ******* * *** * * * *** * consensus_6236#1 TCCATCAAACACTACCACTGTA-TCAGC--GTTCCGTATCCTTAACGTTTGGAAATGAAA 295 consensus_6236#2 TCCATCAAACACTACCACTGTA-TCAGC--GTTCCGTATCCTTAACGTTTGGAAATGAAA 284 consensus_6236#0 TNTGGTTATGTCNAACACCACGGTTAACCAATTCCCAATTCCAAAAAACCCAACNTAAAA 292 * * * * *** * * * **** ** * ** * * *** consensus_6236#1 GCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGA 355 consensus_6236#2 GCTGGTTACAAGGTGAAGATACAGGAGAACGTGATCACTGGCTACCGATTGGTGAACCGA 344 consensus_6236#0 CCAACTT---GGGTTTAATTTCCCCAGGCCGGGTTTTCCCCCGGTTGAATTCCCTTTTTA 349 * ** *** * * * ** ** * * * * ** * * consensus_6236#1 AAAAAAGGTTTAAAATATATTCA-GCTTATTTTGATCCCCGGCTTGAGGTGGTT---GAG 411 consensus_6236#2 AAAAAAGGTTTAAAATATATTCA-GCTTATTTTGATCCCCGGCTTGAGGTGGTT---GAG 400 consensus_6236#0 AAACCGGGTTTTCTGGGGGACCACACACACTTTTGGGACAAACACAAGGCGCTTTGGGGG 409 *** ***** ** * * *** * * *** * ** * * consensus_6236#1 TCCTTCC-CTACGCCAGATGGATTTCTACCGTTCGG-CAGTGTTCGCATCTTTGCAAT-- 467 consensus_6236#2 TCCTTCC-CTACGCCAGATGGATTTCTACCGTTCGG-CAGTGTTCGCATCTTTGCAAT-- 456 consensus_6236#0 TTTTTCAACCACACAAAGGGGTTGGGAAAAAAANGGACAATTTAACCAACNGGGAANCGA 469 * *** * ** * * ** * * ** ** * * ** * * * consensus_6236#1 ---ATTGCCATTTCACGTACGAAAAGG-AGACATATTTTGCAATTTCAGA-----TCAGA 518 consensus_6236#2 ---ATTGCCATTTCACGTACGAAAAGG-AGACATATTTTGCAATTTCAGA-----TCAGA 507 consensus_6236#0 CAAACCNGGTTGTGACATTCCAACCGCTGGGTGAGCTTAACACCACCGGAACTTTTTGGG 529 * * * ** * * ** * * ** ** * ** * * consensus_6236#1 TAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAA 578 consensus_6236#2 TAACACCTATGTAGCGCAACATCAAGCAGACCGGGTTGAAGCGGTTCATGAGCATTGGAA 567 consensus_6236#0 GAGTTGGAGAAGACCCTGNCATTGAAAAAGACGANCCGCGGTGTGCTTCACAACGAACAN 589 * * * *** * * ** * * * * consensus_6236#1 TATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACTAAACGCGA 638 consensus_6236#2 TATGGAATTTGCCGCCAGTTATGTGATATGCAAACTTGCCGGAAATATTACT-------- 619 consensus_6236#0 CTTTTACTTTACCATTTTTTACACAACA-GCNCGTTT-TCAAAATTGTCCTTTCTTGGAA 647 * * *** ** *** * * ** ** * ** * * * consensus_6236#1 AGCCCGCCTACCGGACGAGGTAGCTTT--------------------------------- 665 consensus_6236#2 ------------------------------------------------------------ consensus_6236#0 TTCACCCCCCCCGGGGGAGCTTTTTGGNGCACAACGNGGGGGGATACATGCGAGGAAGAG 707 consensus_6236#1 ------------------------------------------------------------ consensus_6236#2 ------------------------------------------------------------ consensus_6236#0 GCATNATTATGAGGGGAGATTGTTGCAGAAAAAGGGGTTACATATTATTCACCGAGAGGA 767 consensus_6236#1 -------------------------------- consensus_6236#2 -------------------------------- consensus_6236#0 TAATGGGGATTTAGGGTTGNGAGGACNGCACT 799 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||