These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1093 fasta sequence [TTTTTTTTAAACGTTAATCGTAGAAGCTAATTTTATTGCTTATCGTGTACGTATAGAGT-GTAAGTATAGCTACCTGTTTAAGCGAACATTTTCTTTACCATTGAGCTGTATTTGCTGTCCTCTTGCTGGCGCGTTTGAATGATCTGCGCGTGCAA-G-GAC-ACACTCCTTGCTGCTGGCGTAATCGATCCGCTCGAGTGTGGCGAGCGCTTCGGTAAACCGTTTCACCTTAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGGTGTANCGAACACGTGCAGCACTTCGTCGAAGCGGTTCTGCTTGATCAGACAGGCAGCAATGTTAAGGTACAGCGTTTCGAGCAGGGACTGCATTTCCTCGATCGTACCGGCTCCTTCGATGGCCGGGTCGAGCTGATCGATCGGTGACCAGGACAGCAAACACTTGGCTGCCTGGTTGAAGTAGGCGTGCGCAAACAACGGGTATTTGGAGAACATTTTCACGCCATTCTCTTTGTACTGTTTGGCCAGCGCGA-CGTTTTCGGGGACGGTGAGTTGGTAGTAATATTTTTGTCCCTCGATGCGCACCAGCTTCATGATGAACGTGACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCGTTCGTTAACATTTGCTGCAGCAGAAGCTCCACATAGCAATCGACCGGTGTCAGGGCAGTCCCCATGGTGATCCAAAGTTCTTCGCTGGATCCTCCGCCAAGGTAGGATGACTCGTGCGCTTCAACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGATGGTTTCTCCATGGAGGTAAAGCGAAATGAAAGCCGTTCCTTCCGCAGCCCCTTGGGTGCGATCCTCGTACAGCGGGGGCACTACACCGTCATCTCCAGCAGATGGTGGCTGCACTGTTGCCGGCTCCGTTTTTAGCGTGTCGGCGAGCGCTTCCTTGCGCACCAGTGGATTGATTTCGTCGTAATCGCTCGACTCGCGGCCCCAGAACCGGCGCACGTAGAAGGGTGGCTTCTTTTCCGACAGTACCGCGTACAGGATGCCCTGA] [+] EMBL AGA283626 [TTTTTTTTAAACGTTAATCGTAGAAGCTAATTTTATTGCTTATCGTGTACGTATAGAGT GTAAGTATAGCTACCTGTTTAAGCGAACATTTTCTTTACCATTGAGCTGTATTTGCTGTCCTCTTGCTGGCGCGTTTGAATGATCTGCGCGTGCAACGCGAC ACACTCCTTGCTGCTGGCGTAATCGATCCGCTCGAGTGTGGCGAGCGCTTCGGTAAACCGTTTCACCTTAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGGTGTANCGA ] [+] EMBL CNS092Q8 [ gtTAATTTTATTGCTTATCGTGTACGTATAGAGTAGTAAGTATAGCTACCTGTTTAAGCGAACATTTTCTTTACCATTGAGCTGTATTTGCTGTCCTCTTGCTGGCGCGTTTGAATGATCTGCGCGTGCAA G AACTACACTCCTTGCTGCTGGCGTAATCGATCCGCTCGAGTGTGGCGAGCGCTTCGGTAAACCGTTTCACCTTAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGTTTTTGCTGTTGATCGGTGTAGCGAACACGTGCAGCACTTCGTCGAAGCGGTTCTGCTTGATCAGACAGGCAGCAATGTTAAGGTACAGCGTTTCGAGCAGGGACTGCATTTCCTCGATCGTACCGGCTCCTTCGATGGCCGGGTCGAGCTGATCGATCGGTGACCAGGACAGCAAACACTTGGCTGCCTGGTTGAAGTAGGCGTGCGCAAACAACGGGTATTTGGAGAACATTTTCACGCCATTCTCTTTGTACTGTTTGGCCAGCGCGA CGTTTTCGGGGACGGTGAGTTGGTAGTAATATTTTTGTCCCTCGATGCGCACCAGCTTCATGATGAACGTGACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCGTTCGTTAACATTTGCTGCAGCAGAAGCTCCACATAGCAATCGACCGGTGTCAGGGCAGTCCCCATGGTGATCCAAAGTTCTTCGCTGGATCCTCCGCCAAGGTAGGATGACTCGTGCGCTTCAACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGATGGTTTCTCCATGGAGGTAAAGCGAAATGAAAGCCGTTCCTTCCGCAGCCCCTTGGGTGCGATCCTCGTACAGCGGGGGCACTACACCGTCATCTCC ] [-] EMBL BX602375 [ GCGCAAACAACGGGTATTTGGAGAACATTTTCACGCCATTCTCTTTGTACTGTTTGGCCAGCGCGAGCG TTTCGGGGACGGTGAGTTGGTAGTAATATTTTTGTCCCTCGATGCGCACCAGCTTCATGATGAACGTGACGTCACCGCGTTTGGCACTGCTGATCCTACATTTGCTTTGCTCGTTCGTTAACATTTGCTGCAGCAGAAGCTCCACATAGCAATCGACCGGTGTCAGGGCAGTCCCCATGGTGATCCAAAGTTCTTCGCTGGATCCTCCGCCAAGGTAGGATGACTCGTGCGCTTCAACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGATGGTTTCTCCATGGAGGTAAAGCGAAATGAAAGCCGTTCCTTCCGCAGCCCCTT GGTGCGATCCTCGTACAGCGGGGGCACTACACCGTCATCTCCAGCAGATGGTGGCTGCACTGTTGCCGGCTCCGTTTTTAGCGTGTCGGCGAGCGCTTCCTTGCGCACCAGTGGATTGATTTCGTCGTAATCGCTCGACTCGCGGCCCCAGAACCGGCGCACGTAGAAGGGTGGCTTCTTTTCCGACAGTACCGCGTACAGGATGCCCTGA] consensusID : consensus_6241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence [TGTTCGGNTTACGNAAGCTACGTGCANCAACTTNGTCTGAANCCGGTTCNTGCTTGATCAGGCATGCCGTCATATGTTAAAGTACNAGCCGTTGTCGAGCAGGGACTGCATTTCCTCGATCGTACNCTGGCACCTTCGATGTCCGGGGTCGTAGCCTGAGACAGATCGGTGACCAGTACAGCGNNACACTTGGNTCCGTCCTGGTTGTAAGTAGGCGTGCGCATAACNTACGGGTATCTTGGAGTATACAATTTTCACGCCATTCTCTNTTGTGACTGTTTGGCACAGCGCGAGCGTTTCGGGGTACGTGTGAGTTGNGTAGTAATATTTTTGTCACCTCGATGCGCACCAGCTTCATGTATGANACTNTGTACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCAGTTCGTTAACATTTGCTGCAGCAGATAGCTCCACATAGCAATCGTACCGGTGTCAGGGCAAGTCCCCATGGTGATCCATAAGTTCTTCGCTGGATCACTCCAGCCAAGGTAGGTATGACTCGTGCGCTTCATACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGTATGGTTTCTCCATGGAGGTAAAGCGTAATATGTATATAGCCGTTCACTTCCGCAGCCCCTTGGTGCAGTATCACTCGTACAGCGGGGGCACTACACCGTCTATCTCCAGCAGATGGTGGCTGCACTGTTGCCGGCTCCGTTTCCATAGCGTGTCGGCGAGCGCTTCCTTGCGCACCCAGTGGATTGATTTAAACTCGGGGGATT] [-] EMBL AL930048 [TGTTCGGNTTACGNAAGCTACGTGCANCAACTTNGTCTGAANCCGGTTCNTGCTTGATCAGGCATGCCGTCATATGTTAAAGTACNAGCCGTTGTCGAGCAGGGACTGCATTTCCTCGATCGTACNCTGGCACCTTCGATGTCCGGGGTCGTAGCCTGAGACAGATCGGTGACCAGTACAGCGNNACACTTGGNTCCGTCCTGGTTGTAAGTAGGCGTGCGCATAACNTACGGGTATCTTGGAGTATACAATTTTCACGCCATTCTCTNTTGTGACTGTTTGGCACAGCGCGAGCGTTTCGGGGTACGTGTGAGTTGNGTAGTAATATTTTTGTCACCTCGATGCGCACCAGCTTCATGTATGANACTNTGTACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCAGTTCGTTAACATTTGCTGCAGCAGATAGCTCCACATAGCAATCGTACCGGTGTCAGGGCAAGTCCCCATGGTGATCCATAAGTTCTTCGCTGGATCACTCCAGCCAAGGTAGGTATGACTCGTGCGCTTCATACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGTATGGTTTCTCCATGGAGGTAAAGCGTAATATGTATATAGCCGTTCACTTCCGCAGCCCCTTGGTGCAGTATCACTCGTACAGCGGGGGCACTACACCGTCTATCTCCAGCAGATGGTGGCTGCACTGTTGCCGGCTCCGTTTCCATAGCGTGTCGGCGAGCGCTTCCTTGCGCACCCAGTGGATTGATTTAAACTCGGGGGATT] consensusID : consensus_6241#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 788 fasta sequence [TTGAACTGTAATTTGGCCTGTCCCTCTTGCTGGCGCGTTTTGAATGATCCTGCGCGTGCAACCGCCGGACACACTCCTTGCTTGCTGGCGTAAATCGATCCGCTCGAGTGCTGCGAGCGCTTCGGTAAACCGTTTCACCGTAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGGTGTAGCGAAGCACGTGCAGCACTTCGTCGAAGCGGTTCTGCTTGATCAGGCATGCCGCAATGTTAAGGTACAGCGTTTCGAGCAGGGACTGCATTTCCTCGATCGTACCGGCACCTTCGATGGCCGGGTCGAGCTGATCGATCGGTGACCAGGACAGCAAACACTTGACCGCCTGGTTGAAGTAGGCGTGCGCAAACAACGGGTATTTGGAGAACATTTTCACGCCATTCTCTTTGTACTGTTTGGCCAGCGCGAGCGTTTCGGGGACGGTGAGTTGGTAGTAATATTTTTGTCCCTCGATGCGCACCAGCTTCATGATGAACGTGACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCGTTCGTTAACATTTGCTGCAGCAGAAGCTCCACATAGCAATCGACCGGTGTCAGGGCAGTCCCCATGGTGATCCAAAGTTCTTCGCTGGATCCTCCGCCAAGGTAGGATGACTCGTGCGCTTCAACATTGCTCACGTCGCTTANCGTTACCAGGCAACGGCTCAGCTCGGATGGTTTCTCCATGGAGGTAAAGCGAAATGAACCTCGTGCGGATCTGC] [-] EMBL BX467438 [TTGAACTGTAATTTGGCCTGTCCCTCTTGCTGGCGCGTTTTGAATGATCCTGCGCGTGCAACCGCCGGACACACTCCTTGCTTGCTGGCGTAAATCGATCCGCTCGAGTGCTGCGAGCGCTTCGGTAAACCGTTTCACCGTAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGGTGTAGCGAAGCACGTGCAGCACTTCGTCGAAGCGGTTCTGCTTGATCAGGCATGCCGCAATGTTAAGGTACAGCGTTTCGAGCAGGGACTGCATTTCCTCGATCGTACCGGCACCTTCGATGGCCGGGTCGAGCTGATCGATCGGTGACCAGGACAGCAAACACTTGACCGCCTGGTTGAAGTAGGCGTGCGCAAACAACGGGTATTTGGAGAACATTTTCACGCCATTCTCTTTGTACTGTTTGGCCAGCGCGAGCGTTTCGGGGACGGTGAGTTGGTAGTAATATTTTTGTCCCTCGATGCGCACCAGCTTCATGATGAACGTGACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCGTTCGTTAACATTTGCTGCAGCAGAAGCTCCACATAGCAATCGACCGGTGTCAGGGCAGTCCCCATGGTGATCCAAAGTTCTTCGCTGGATCCTCCGCCAAGGTAGGATGACTCGTGCGCTTCAACATTGCTCACGTCGCTTANCGTTACCAGGCAACGGCTCAGCTCGGATGGTTTCTCCATGGAGGTAAAGCGAAATGAACCTCGTGCGGATCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6241#0 TTTTTTTTAAACGTTAATCGTAGAAGCTAATTTTATTGCTTATCGTGTACGTATAGAGTG 60 consensus_6241#2 ------------------------------------------------------------ consensus_6241#1 ------------------------------------------------------------ consensus_6241#0 TAAGTATAGCTACCTGTTTAAGCGAACATTTTCTTTACCATTGAGCTGTA-TTTG--CTG 117 consensus_6241#2 ----------------------------------------TTGAACTGTAATTTGGCCTG 20 consensus_6241#1 ------------------------------------------------------------ consensus_6241#0 TCC-TCTTGCTGGCGCGTTT-GAATGATC-TGCGCGTGCAA-----GGACACACTCCTTG 169 consensus_6241#2 TCCCTCTTGCTGGCGCGTTTTGAATGATCCTGCGCGTGCAACCGCCGGACACACTCCTTG 80 consensus_6241#1 ------------------------------------------------------------ consensus_6241#0 CT-GCTGGCGTAA-TCGATCCGCTCGAGTGTGGCGAGCGCTTCGGTAAACCGTTTCACCT 227 consensus_6241#2 CTTGCTGGCGTAAATCGATCCGCTCGAGTGCTGCGAGCGCTTCGGTAAACCGTTTCACCG 140 consensus_6241#1 ------------------------------------------------------------ consensus_6241#0 TAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGG 287 consensus_6241#2 TAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGG 200 consensus_6241#1 -----------------------------------------------------TGTTCGG 7 ** **** consensus_6241#0 TGTANCGAA-C-ACGTGCAGCA-CTTCGTC--GAAGCGGTTCT-GCTTGATCAGACAGGC 341 consensus_6241#2 TGTAGCGAAGC-ACGTGCAGCA-CTTCGTC--GAAGCGGTTCT-GCTTGATCAGGCATGC 255 consensus_6241#1 NTTACGNAAGCTACGTGCANCAACTTNGTCTGAANCCGGTTCNTGCTTGATCAGGCATGC 67 ** ** * ******* ** *** *** * ****** ********** ** ** consensus_6241#0 AGCAAT--GTTAAGGTACAG--CGTT-TCGAGCAGGGACTGCATTTCCTCGATCGTACC- 395 consensus_6241#2 CGCAAT--GTTAAGGTACAG--CGTT-TCGAGCAGGGACTGCATTTCCTCGATCGTACC- 309 consensus_6241#1 CGTCATATGTTAAAGTACNAGCCGTTGTCGAGCAGGGACTGCATTTCCTCGATCGTACNC 127 * ** ***** **** **** ******************************* consensus_6241#0 -GGCTCCTTCGATGGCCGGG-TCG-AGCT---GATCGATCGGTGACCAGGACAGC-AAAC 448 consensus_6241#2 -GGCACCTTCGATGGCCGGG-TCG-AGCT---GATCGATCGGTGACCAGGACAGC-AAAC 362 consensus_6241#1 TGGCACCTTCGATGTCCGGGGTCGTAGCCTGAGACAGATCGGTGACCAGTACAGCGNNAC 187 *** ********* ***** *** *** ** ************* ***** ** consensus_6241#0 ACTTGGCTGC---CTGGTTG-AAGTAGGCGTGCGCA-AACA-ACGGGTAT-TTGGAGAAC 501 consensus_6241#2 ACTTGACCGC---CTGGTTG-AAGTAGGCGTGCGCA-AACA-ACGGGTAT-TTGGAGAAC 415 consensus_6241#1 ACTTGGNTCCGTCCTGGTTGTAAGTAGGCGTGCGCATAACNTACGGGTATCTTGGAGTAT 247 ***** * ******* *************** *** ******** ****** * consensus_6241#0 A---TTTTCACGCCATTCTCTTT-GT-ACTGTTTGGC-CAGCGCGACGTTTTCGGGG-AC 554 consensus_6241#2 A---TTTTCACGCCATTCTCTTT-GT-ACTGTTTGGC-CAGCGCGAGCGTTTCGGGG-AC 468 consensus_6241#1 ACAATTTTCACGCCATTCTCTNTTGTGACTGTTTGGCACAGCGCGAGCGTTTCGGGGTAC 307 * ***************** * ** ********** ******** ******** ** consensus_6241#0 G-GTGAGTTGG-TAGTAATATTTTTGTC-CCTCGATGCGCACCAGCTTCATG-ATGAACG 610 consensus_6241#2 G-GTGAGTTGG-TAGTAATATTTTTGTC-CCTCGATGCGCACCAGCTTCATG-ATGAACG 524 consensus_6241#1 GTGTGAGTTGNGTAGTAATATTTTTGTCACCTCGATGCGCACCAGCTTCATGTATGANAC 367 * ******** **************** *********************** **** consensus_6241#0 TG---ACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTC-GTTCGTTAAC 666 consensus_6241#2 TG---ACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTC-GTTCGTTAAC 580 consensus_6241#1 TNTGTACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCAGTTCGTTAAC 427 * ******************************************** ********** consensus_6241#0 ATTTGCTGCAGCAGA-AGCTCCACATAGCAATCG-ACCGGTGTCAGGGCA-GTCCCCATG 723 consensus_6241#2 ATTTGCTGCAGCAGA-AGCTCCACATAGCAATCG-ACCGGTGTCAGGGCA-GTCCCCATG 637 consensus_6241#1 ATTTGCTGCAGCAGATAGCTCCACATAGCAATCGTACCGGTGTCAGGGCAAGTCCCCATG 487 *************** ****************** *************** ********* consensus_6241#0 GTGATCCA-AAGTTCTTCGCTGGATC-CTCC-GCCAAGGTAGG-ATGACTCGTGCGCTTC 779 consensus_6241#2 GTGATCCA-AAGTTCTTCGCTGGATC-CTCC-GCCAAGGTAGG-ATGACTCGTGCGCTTC 693 consensus_6241#1 GTGATCCATAAGTTCTTCGCTGGATCACTCCAGCCAAGGTAGGTATGACTCGTGCGCTTC 547 ******** ***************** **** *********** **************** consensus_6241#0 A-ACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGG-ATGGTTTCTCC 837 consensus_6241#2 A-ACATTGCTCACGTCGCTTANCGTTACCAGGCAACGGCTCAGCTCGG-ATGGTTTCTCC 751 consensus_6241#1 ATACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGTATGGTTTCTCC 607 * ******************* ************************** *********** consensus_6241#0 ATGGAGGTAAAGCGAAATGAAAGC-----CGTTCCT-TCCGCAGCCCCTTGGGTGCGATC 891 consensus_6241#2 ATGGAGGTAAAGCGAAATGAACCT-----CGTGCGGATCTGC------------------ 788 consensus_6241#1 ATGGAGGTAAAGCGTAATATGTATATAGCCGTTCACTTCCGCAGCCCCTTGGTGCAGTAT 667 ************** *** *** * ** ** consensus_6241#0 CTCGTACAGCGGGGGCACTACACCGTCATCTCCAGCAGATGGTGGCTGCACTGTTGCCGG 951 consensus_6241#2 ------------------------------------------------------------ consensus_6241#1 CACTCGTACAGCGGGGGCACTACACCGTCTATCTCCAGCAGATGGTGGCTGCACTGTTGC 727 consensus_6241#0 CTCCGTTTTTAGCGTGTCGGCGAGCGCTTCCTTGCGCACCAGTGGATTGATTTCGTCGTA 1011 consensus_6241#2 ------------------------------------------------------------ consensus_6241#1 CGGCTCCGTTTCCATAGCGTGTCGGCGAGCGCTTCCTTGCGCACCCAGTGGATTGATTTA 787 consensus_6241#0 ATCGCTCGACTCGCGGCCCCAGAACCGGCGCACGTAGAAGGGTGGCTTCTTTTCCGACAG 1071 consensus_6241#2 ------------------------------------------------------------ consensus_6241#1 AACTCGGGGGATT----------------------------------------------- 800 consensus_6241#0 TACCGCGTACAGGATGCCCTGA 1093 consensus_6241#2 ---------------------- consensus_6241#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||