These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 958 fasta sequence [AATCCCAGGTTAAATATGGACATGTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGGTGCCGGATCTACCGGAAGGAGTTTCATTGCCGTACACGTTTGTAACCGTTTGGTTGACAAAATAGACTTTACCGATCTAGTGCCAACGCATGATGCTGACATTCGGCTTTCCGGCCATGTGAGCTGGGTAGGCCGTACGTCGGTGGAGGTAGTGGTCTGGATGGAACAGAAGCTGCATGGCAAGTGGCGCAAGCTTACCCGTGCACTGTTTCTGATGGCCGCTAGGGACGCTACCAACACCAAGGCAGCCTTCATAAATCCCCTAGTGCCTGCTAACGAAGAGGAGAAAGCAATCTTTGACGGAGGAGAATCACGCAAAAAACGACGCATACAGATGCAGCAGGAAGATTTGCTTAAGACGGAACCGAACGACTTCGAACAGCGCATGGTGCACGAGCTGTTCGTGAAATCGATCGATACGAAAAGCAAAGCGTTCAACAAACGTATCCTGCCGCCCGGTTTACGTATGGATGGAGGATGCCACCATGGCGAACATCGTGTTTTCCCATCCCGAAGATCGTAACGCGCACAACAAAGTGTTTGGCGGCTTTCTGATGCGCAATGCGCTAGAGTTGAGCTGGGCGTTGGCGTACAACTTTGCCAAGCGTCGTCCTAAGCTGGAACACATTTCGGACATTAGCTTCCATCATCCGGTAGACGTCTCGTCGATGCTGAACATGCAGGCCCATGTCATCTTTACCGATCTTCACTATATGGAAATTGTCGTTCTGGCGGATGTGTACGATGCCGTCACTGGACAGCAAACGACGACCAACAGTTTCTACTACACGTACTCGGTCGCTGAACGATTGCCGAAGATAATGCCCAAGACGTACCATGAGGCAATGTATTATTTGGACGGACGGCGAAAGTTCCGCTACGCGATGGGTATAGATACG] [+] EMBL AL694201 [AATCCCAGGTTAAATATGGACATGTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGGTGCCGGATCTACCGGAAGGAGTTTCATTGCCGTACACGTTTGTAACCGTTTGGTTGACAAAATAGACTTTACCGATCTAGTGCCAACGCATGATGCTGACATTCGGCTTTCCGGCCATGTGAGCTGGGTAGGCCGTACGTCGGTGGAGGTAGTGGTCTGGATGGAACAGAAGCTGCATGGCAAGTGGCGCAAGCTTACCCGTGCACTGTTTCTGATGGCCGCTAGGGACGCTACCAACACCAAGGCAGCCTTCATAAATCCCCTAGTGCCTGCTAACGAAGAGGAGAAAGCAATCTTTGACGGAGGAGAATCACGCAAAAAACGACGCATACAGATGCAGCAGGAAGATTTGCTTAAGACGGAACCGAACGACTTCGAACAGCGCATGGTGCACGAGCTGTTCGTGAAATCGATCGATACGAAAAGCAAAGCGTTCAACAAACGTATCCTGCCGCCCGGTTTACGT ] [+] EMBL BX628245 [ TTACCCGTGCACTGTTTCTGATGGCCGCTAGGGACGCTACCAACACCAAGGCAGCCTTCATAAATCCCCTAGTGCCTGCTAACGAAGAGGAGAAAGCAATCTTTGACGGAGGAGAATCACGCAAAAAACGACGCATACAGATGCAGCAGGAAGATTTGCTTAAGACGGAACCGAACGACTTCGAACAGCGCATGGTGCACGAGCTGTTCGTGAAATCGATCGATACGAAAAGCAAAGCGTTCAACAAACGTATCCTGCCGCCCGG TTACGTATGGATGGAGGATGCCACCATGGCGAACATCGTGTTTTCCCATCCCGAAGATCGTAACGCGCACAACAAAGTGTTTGGCGGCTTTCTGATGCGCAATGCGCTAGAGTTGAGCTGGGCGTTGGCGTACAACTTTGCCAAGCGTCGTCCTAAGCTGGAACACATTTCGGACATTAGCTTCCATCATCCGGTAGACGTCTCGTCGATGCTGAACATGCAGGCCCATGTCATCTTTACCGATCTTCACTATATGGAAATTGTCGTTCTGGCGGATGTGTACGATGCCGTCACTGGACAGCAAACGACGACCAACAGTTTCTACTACACGTACTCGGTCGCTGAACGATTGCCGAAGATAATGCCCAAGACGTACCATGAGGCAATGTATTATTTGGACGGACGGCGAAAGTTCCGCTACGCGATGGGTATAGATACG] consensusID : consensus_6243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence [AGAATNGCCCCAGGGTTTATACATAGCAAGTTGTCGTCGCTGCGGAAGATTGGTCAGCAAGATGATTGCAACCAGAGTTCGATTTGGTGGTTTGCAGAATATTGTGCAGCGACAATTTTGTGCCAGTCTGCAACCGAAACGATACGGAACCGTCCAATACCAACGCATCGCAAATGTCGCCACGGCCAACGCGCTGATAAGTGATACGAAAACAAGGGCCTCTCCAGTGACGTTAGGCGGTCATAGGATGTATTCCAGCATTAACTATTTGCGTGGCGATTTGGAGTGTACAGCCGGGACGATGAACGATGTAAAACAAACGATAATACAAAAGCTTGGAATCGAACGTCGGGTACACGCCGTTCGTGAGCACCCGCGAACATTTGGTAAAGTACGTGCCGCAATCGGTCAGTGCCCTGCCTCCCCGCAGTATGCAGGATTCATTTACATCGGCCATAATTCCGCTGACAACAGATAAAATTCTCAAGGACAAGTACGTCGGTTTCATGGGAAACGTTCGCGTTGGTCGGTTGATGGAAGATATGGACATGTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGTGCCGGATCTACCGGAAGGAGTTTCATTGCCGTACACGTTTGTAACCGTTTTGGTTGACAAAATAGACTTTACCGATCTAGTGCCAACGCATGATGCT] [+] EMBL AL695743 [AGAATNGCCCCAGGGTTTATACATAGCAAGTTGTCGTCGCTGCGGAAGATTGGTCAGCAAGATGATTGCAACCAGAGTTCGATTTGGTGGTTTGCAGAATATTGTGCAGCGACAATTTTGTGCCAGTCTGCAACCGAAACGATACGGAACCGTCCAATACCAACGCATCGCAAATGTCGCCACGGCCAACGCGCTGATAAGTGATACGAAAACAAGGGCCTCTCCAGTGACGTTAGGCGGTCATAGGATGTATTCCAGCATTAACTATTTGCGTGGCGATTTGGAGTGTACAGCCGGGACGATGAACGATGTAAAACAAACGATAATACAAAAGCTTGGAATCGAACGTCGGGTACACGCCGTTCGTGAGCACCCGCGAACATTTGGTAAAGTACGTGCCGCA ] [+] EMBL BX604606 [ ATACGGAACCGTCCAATACCAACGCATCGCAAATGTCGCCACGGCCAACGCGCTGATAAGTGATACGAAAACAAGGGCCTCTCCAGTGACGTTAGGCGGTCATAGGATGTATTCCAGCATTAACTATTTGCGTGGCGATTTGGAGTGTACAGCCGGGACGATGAACGATGTAAAACAAACGATAATACAAAAGCTTGGAATCGAA GTCGGGTACACGCCGTTCGTGAGCACCCGCGAACATTTGGTAAAGTACGTGCCGCAATCGGTCAGTGCCCTGCCTCCCCGCAGTATGCAGGATTCATTTACATCGGCCATAATTCCGCTGACAACAGATAAAATTCTCAAGGACAAGTACGTCGGTTTCATGGGAAACGTTCGCGTTGGTCGGTTGATGGAAGATATGGACATGTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGTGCCGGATCTACCGGAAGGAGTTTCATTGCCGTACACGTTTGTAACCGTTTTGGTTGACAAAATAGACTTTACCGATCTAGTGCCAACGCATGATGCT] [+] EMBL BM595422 [ ccgAAGGGCCTCTCCAGTGACGTTAGGCGGTCATAGGATGTATTCCAGCATTAACTATTTGCGTGGTGATTTGGAGTGTACGGGCGGGACGATGAACGATGTAAAACAAACGATAATACAAAAGCTTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6243#0 AATCCCAGGTTAAATATGGACATGTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGGT 60 consensus_6243#1 ------------------------------------------------------------ consensus_6243#0 GCCGGATCTACCGGAAGGAGTTTCATTGCCGTACACGTTTGTAACCGTTTGGTTGACAAA 120 consensus_6243#1 ---------------------AGAATNGCCCCAGG-GTTTATACATAGCAAGTTGTC--- 35 ** *** * **** ** **** * consensus_6243#0 ATAGACTTTACCGATCTAGTGCCAACGCATGATGCTGACATTCGGCTTTCCGGCCATGTG 180 consensus_6243#1 ---GTCGCTGCGGAAGATTGGTCA--GCAAGATGATTGCAACCAGAGTTC-GATTTGGTG 89 * * * * ** * ** *** **** * ** * * *** * *** consensus_6243#0 AGCTG-GGTAGGCCGTACGTCGGTGGAGGTAGTGGTCTGGATGGAACAGAAGCTGCATGG 239 consensus_6243#1 GTTTGCAGAATATTGTGCAGCGACA-ATTTTGTG-CCAGTCTGCAACCGAAACGATACGG 147 ** * * ** * ** * * *** * * ** *** *** * * ** consensus_6243#0 CAAGTGGCGCAAGCTTACCCGTGCACTGTTTCTGATGGCCGCTAGGGACGCTACCAACAC 299 consensus_6243#1 --AACCGTCCAA---TACCAACGCATCGCAAATG-TCGCCACGGCCAACGCGCTGATAAG 201 * * *** **** *** * ** * *** * **** * * consensus_6243#0 CAAGGCAGCCTTCATAAATCCCCTAGTGCCTGCTAACGAAGAGGAGAAAGCAATCTTTGA 359 consensus_6243#1 TGATACGAAAACAAGGGCCTCTCCAGTGAC-GTTAGGCGGTCATAGGATGTATTCC--AG 258 * * * * * **** * * ** ** * * * ** consensus_6243#0 CGGAGGAGAATCACGCAAAAAAC-GACGCATACAGATGCAGCA--GGAAGATTTGCTTAA 416 consensus_6243#1 CATTAACTATTTGCGTGGCGATTTGGAGTGTACAGCCGGGACGATGAACGATGTAAAACA 318 * * * ** * * * ***** * * * * *** * * consensus_6243#0 GACGG-AACCGAACGACTTCGAACAGCGCATGGTGCACGAGCTGTTCGTGAAATCGATCG 475 consensus_6243#1 AACGATAATACAAAAGCTTGGAATCGAACGTCGGGTACACGCCGTTCGTGAGCACCCGCG 378 *** ** ** *** *** * * * * * ** ** ******** * ** consensus_6243#0 ATACGAAAAGCAAAGCGTTCAACAAACGTATCCTGCCGCCCGGTTTACGTATGGATGGAG 535 consensus_6243#1 A-ACATTTGGTAAAGTACGTGCCGCAATCGGTCAGTGCCCTGCCTCCCCGCAGTATGCAG 437 * ** * **** * * * * ** * * * * *** ** consensus_6243#0 GATGCCACCATGGCGAACATCGTGTTTTCCCATCCCGAAGATCGTAACGCGCACAACAAA 595 consensus_6243#1 GATTCATTTACATCGGCCATAAT----TCCGCTGACAACAG--ATAAAATTCTCAAGGAC 491 *** * * ** *** * *** * * * *** * *** * consensus_6243#0 GTGTTTGGCGGCTTTCTGATGCGCAAT-GCGCTAGAGTTGAGCTGGGCGTTGGCGTACAA 654 consensus_6243#1 AAGTACGTCGGTTTCATGGGAAACGTTCGCGTTGGTCGGTTGATGGAAGATA-TGGACAT 550 ** * *** ** ** * * *** * * * *** * * * *** consensus_6243#0 CTTTGCCAA--GCGTCGTCC-TAAGCTGGAACACATTTCGGACATTAGCTTCCATCATCC 711 consensus_6243#1 GTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGTGCCGGA------------TCTACC 598 ****** * ***** * ***** * ** * * **** ** ** consensus_6243#0 GGTAGACGTCTCGTCGATGCTGAACATGCAGGCCCATGTCATCTTTACCGATCTTCACTA 771 consensus_6243#1 GGAAGGAGTTTCAT---TGCCGTACACGTT------TGTAACCGTTTTGG---TTGACAA 646 ** ** ** ** * *** * *** * *** * * ** * ** ** * consensus_6243#0 TATGGAAATTGTCGTTCTGGCGGATGTGTACGATGCCGTCACTGGACAGCAAACGACGAC 831 consensus_6243#1 AATAGACTTTACCGATCTAGTGCCAACGCATGATGCT----------------------- 683 ** ** ** ** *** * * * * ***** consensus_6243#0 CAACAGTTTCTACTACACGTACTCGGTCGCTGAACGATTGCCGAAGATAATGCCCAAGAC 891 consensus_6243#1 ------------------------------------------------------------ consensus_6243#0 GTACCATGAGGCAATGTATTATTTGGACGGACGGCGAAAGTTCCGCTACGCGATGGGTAT 951 consensus_6243#1 ------------------------------------------------------------ consensus_6243#0 AGATACG 958 consensus_6243#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||