These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 954 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAGAGAGGAAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAAGAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAAAAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTTGGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAACACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAAGGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGAGAGTAAAGTAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTCAACAAAACAAACAAACAAAAAACTGAAAAACTCACATAATATAGCTAAAACCGGAGCCGTTTTTGGTGTTGTGTGTGTGGGTGAACCGGCGGATGGGTATAGGTGGATGAAAGTTCAGCAAAGAGC--CTCTCCGAAACGGATGGAGATATTTAAGTGGTAGACAAATTGTTTGTTTTTTTTTTGCTATATTTGCAAACGGAAAAGTAGGAAGCTCTAAAATGTAAAGTAAAAGAGGGAAACACAAAACTAAAATAACAAAAAAGGAAAAACAAATCAAACCACTAATGCCCATTAACAATTACACAAAACAAACACCACCAATAGGAGAAAGGAAAGGACAGACCGAGAGAAAGAGAGAGAGAGAGAGAGAGGTAAATAAAAAACAGCTAATAAAGATTGGTTATCAAATGTAAAA] [+] EMBL BM613454 [CCGCCCACGCGTCCGCCCACGCGTCCGAAGAGAGGAAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAAGAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAAAAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTTGGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAACACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAAGGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGAGAGTAAAGTAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTCAACAAAACAAACAAACAAAAAACTGAAAAACTCACATAATATAGCTAAAACCGGAGCCGTTTTTGGTGTTGTGTGT ] [+] EMBL BM630094 [ ccgAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAACACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAAGGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGAGAGTAAAGTAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTCAACAAAACAAACAAACAAAAAACTGAAAAACTCACATAATATAGCTAAAACCGGAGCCGTTTTTGGTGTTGTGTGTGTGGGTGAACCGGCGGATGGGTATAGGTGGATGAAAGTTCAGCAAAGAGC CTCTCCGAAACGGATGGAGATATTTAAGTGGTAGACAAATTGTTTGTTTTTTTTTTGCTATATTTGCAAACGGAAAAGTAGGAAGCTCTAAA ] [+] EMBL BM604862 [ ccgAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGGGAGTAAAGTAGAAAGAGCGGTTCGAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTAAACAAAACAAACAAAC AAACTGAAAAACTCACATAATATAGCTAAAACCGGAACCGTTTTTGGTGTTGTGTGTGTGGGTGAACTGGCGGATGGGCATAGGTGGATGAAAGTTCAGCAAAGAGCCTCTCTCCGAAACGGATGGAGATATTTAAGTAGTAGACAAATTG TTTTTTTTTGCTATATTTGCAAACGGAAAAGTAGGAAGCTCTAAAATGTAAAGTAAAAGAGGGAAACACAAAACTAAAATAACAAAAAAGGAAAAACAAATCAAACCACTAATGCCCATTAACAATTACACAAAACAAACACCACCAATAGGAGAAAGGAAAGGACAGACCGAGAGAAAGAGAGAGAGAGAGAGAGAGGTAAATAAAAAACAGCTAATAAAGATTGGTTATCAAATGTAAAA] consensusID : consensus_6247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence [CCGAAAACAACGTTTTTAAGTAGTGAATTACTAACAAAAAAGAATAAAACTACCAACTCCATCACACCACAGCCCAAACAAGCGAAACACACAAAACAAACAATGTAATGCTATATATATATAAATCTAATGCGTATAAAGGAAGTGGAGAGAAAGTGACAGTAACAAAAAGAAGGTAAACAATTTACTCATAAACAAAACAACACACAAAAAAAAACACAAACACAATCAAATGTACTGTACAAAATGTGTTACTAAAACCTCTTTTTAACTGAGGGGAGAGAGAGAGAAAAAGAGAGGAAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAAGAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAAAAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTTGGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAACACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAAGGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGAGAGTAAAGTAAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTCGAC] [+] EMBL BM641001 [CCGAAAACAACGTTTTTAAGTAGTGAATTACTAACAAAAAAGAATAAAACTACCAACTCCATCACACCACAGCCCAAACAAGCGAAACACACAAAACAAACAATGTAATGCTATATATATATAAATCTAATGCGTATAAAGGAAGTGGAGAGAAAGTGACAGTAACAAAAAGAAGGTAAACAATTTACTCATAAACAAAACAACACACAAAAAAAAACACAAACACAATCAAATGTACTGTACAAAATGTGTTACTAAAACCTCTTTTTAACTGAGGGGAGAGAGAGAGAAAAAGAGAGGAAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAAGAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAAAAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTTGGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAA ] [+] EMBL BM657200 [ ccgCAAACACAATCAAATGTACTGTACAAAATGTGTTACTAAAACCTCTTTTTAACTGAGGGGAGAGAGAGAGAAAAAGAGAGGAAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAAGAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAAAAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTTGGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAACACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAAGGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGAGAGTAAAGTAAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6247#0 ------------------------------------------------------------ consensus_6247#1 CCGAAAACAACGTTTTTAAGTAGTGAATTACTAACAAAAAAGAATAAAACTACCAACTCC 60 consensus_6247#0 ------------------------------------------------------------ consensus_6247#1 ATCACACCACAGCCCAAACAAGCGAAACACACAAAACAAACAATGTAATGCTATATATAT 120 consensus_6247#0 ------------------------------------------------------------ consensus_6247#1 ATAAATCTAATGCGTATAAAGGAAGTGGAGAGAAAGTGACAGTAACAAAAAGAAGGTAAA 180 consensus_6247#0 ------------------------------------------------------------ consensus_6247#1 CAATTTACTCATAAACAAAACAACACACAAAAAAAAACACAAACACAATCAAATGTACTG 240 consensus_6247#0 -----------------------CCGCCCA--CGCGTCCGCCCACGCGTCCGAAGAGAGG 35 consensus_6247#1 TACAAAATGTGTTACTAAAACCTCTTTTTAACTGAGGGGAGAGAGAGAGAAAAAGAGAGG 300 * * * * * ******** consensus_6247#0 AAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAA 95 consensus_6247#1 AAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAA 360 ************************************************************ consensus_6247#0 GAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAA 155 consensus_6247#1 GAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAA 420 ************************************************************ consensus_6247#0 AAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTT 215 consensus_6247#1 AAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTT 480 ************************************************************ consensus_6247#0 GGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGA 275 consensus_6247#1 GGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGA 540 ************************************************************ consensus_6247#0 CTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAA 335 consensus_6247#1 CTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAA 600 ************************************************************ consensus_6247#0 CACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAA 395 consensus_6247#1 CACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAA 660 ************************************************************ consensus_6247#0 GGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGG 455 consensus_6247#1 GGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGG 720 ************************************************************ consensus_6247#0 GAGAGAGTAAAGTA-GAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAAT 514 consensus_6247#1 GAGAGAGTAAAGTAAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAAT 780 ************** ********************************************* consensus_6247#0 TCTCAGTTAGATTTTTTCGAAATTCAACAAAACAAACAAACAAAAAACTGAAAAACTCAC 574 consensus_6247#1 TCTCAGTTAGATTTTTTCGAAATTCGAC-------------------------------- 808 ************************* ** consensus_6247#0 ATAATATAGCTAAAACCGGAGCCGTTTTTGGTGTTGTGTGTGTGGGTGAACCGGCGGATG 634 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GGTATAGGTGGATGAAAGTTCAGCAAAGAGCCTCTCCGAAACGGATGGAGATATTTAAGT 694 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GGTAGACAAATTGTTTGTTTTTTTTTTGCTATATTTGCAAACGGAAAAGTAGGAAGCTCT 754 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 AAAATGTAAAGTAAAAGAGGGAAACACAAAACTAAAATAACAAAAAAGGAAAAACAAATC 814 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 AAACCACTAATGCCCATTAACAATTACACAAAACAAACACCACCAATAGGAGAAAGGAAA 874 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GGACAGACCGAGAGAAAGAGAGAGAGAGAGAGAGAGGTAAATAAAAAACAGCTAATAAAG 934 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 ATTGGTTATCAAATGTAAAA 954 consensus_6247#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||