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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CCGCGCAAATACACACACACACACATACAGACAGCACACGTGGACGATGTAGTAGCGCGATACCGTAAAGTCACCGGTACCTGCTTTGTGAAGAGTAGAACAAGGGATTTAACCAAAACAAAAGTAACTAACCTAAAACAAAACAATCTGAACGAACGTCACACACGTGGTAGTTGCTGATAGAGAGCGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAATGATTGGACCCTGTAAAAGGATACTTCAACAGGCTGGTATAACAAAAAAAAAAAGAAACAAAGAAGGTTTGCAGAACTGAGACACAGCACTAATGTCATCGGAATCTCGAGCATCGTGCAGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAGAGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATATATATATATATATATATATACACACACAGATGGGCAGGCCACGGGGGCCCCCTTTCAGCCCCTCACCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATTCCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTAAGGCAAAACAATAGCAAAAACAACAACAACAACAGAAA]
[+] EMBL BM634629 [CCGCGCAAATACACACACACACACATACAGACAGCACACGTGGACGATGTAGTAGCGCGATACCGTAAAGTCACCGGTACCTGCTTTGTGAAGAGTAGAACAAGGGATTTAACCAAAACAAAAGTAACTAACCTAAAACAAAACAATCTGAACGAACGTCACACACGTGGTAGTTGCTGATAGAGAGCGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAATGATTGGACCCTGTAAAAGGATACTTCAACAGGCTGGTATAACAAAAAAAAAAAGAAACAAAGAAGGTTTGCAGAACTGAGACACAGCACTAATGTCATCGGAATCTCGAGCATCGTGCAGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAGAGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATATATATATATATATATATATACACACACAGATGGGCAGGCCACGGGGGCCCCCTTTCAGCCCCTCACCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATTCCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTAAGGCAAAACAATAGCAAAAACAACAACAACAACAGAAA]
consensusID : consensus_627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[CCGGAAATACACTCTCACAAACACACAACCACACATCCAGTTAGTATACAATCACACACACAATCACACACACACACACACACACACACACACACACACACAGAACGTACATAACAAATAAAAACACGCCACAACGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAATGATTGGACCCTGCAAAAGGATACTTCAACGGGCTGGTATAACAAAAAAAAAAGAAACAAAGAAGGTTTGCAGAACTGAGACACAGCACTAATGTCTAATCGGAATCTCGAGCATCGTGCAGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAGAGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATATATATATACACACACAGATGGGCAGGCCACTGGGGCCCCTTCAGCCCCTTGCCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATTCCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTCGGGCAAAACAATAGCAAAAACCACAACCACAACAG]
[+] EMBL BM620675 [CCGGAAATACACTCTCACAAACACACAACCACACATCCAGTTAGTATACAATCACACACACAATCACACACACACACACACACACACACACACACACACACAGAACGTACATAACAAATAAAAACACGCCACAACGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAATGATTGGACCCTGCAAAAGGATACTTCAACGGGCTGGTATAACAAAAAAAAAAGAAACAAAGAAGGTTTGCAGAACTGAGACACAGCACTAATGTCTAATCGGAATCTCGAGCATCGTGCAGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAGAGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATATATATATACACACACAGATGGGCAGGCCACTGGGGCCCCTTCAGCCCCTTGCCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATTCCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTCGGGCAAAACAATAGCAAAAACCACAACCACAACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_627#0 CCGCGCAAATACACACACACACACATACAGACAGCACACGTGGACGATGTAGTA----GC 56
consensus_627#1 --CCGGAAATACACTCTCACAAACACACA-ACCACACATCCAGTTAGTATACAATCACAC 57
** ******** * **** *** *** ** **** * * ** * *
consensus_627#0 GCGATACCGTAAAGTCACCGGTACCTGCTTTGTGAAGAGTAGA-ACAAGGGATTTAACCA 115
consensus_627#1 ACACAATCACACACACACACACACACACACACACACACACACACAGAACGTACATAACAA 117
* * * * * *** ** * * * * * ** * * **** *
consensus_627#0 AAACAAAAGTAACTAACCTAAAACAAAACAATCTGAACGAACGTCACACAC---GTGGTA 172
consensus_627#1 ATAAAAACACGCCACAACGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 177
* * *** * * * *** * * * ** ** * * * * * * *
consensus_627#0 GTTGCTGATAGAGAGCGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAAT 232
consensus_627#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAAT 237
* ** ****** ********************************************
consensus_627#0 GATTGGACCCTGTAAAAGGATACTTCAACAGGCTGGTATAACAAAAAAAAAAAGAAACAA 292
consensus_627#1 GATTGGACCCTGCAAAAGGATACTTCAACGGGCTGGTATAACAAAAAAAAAA-GAAACAA 296
************ **************** ********************** *******
consensus_627#0 AGAAGGTTTGCAGAACTGAGACACAGCACTAATGTC--ATCGGAATCTCGAGCATCGTGC 350
consensus_627#1 AGAAGGTTTGCAGAACTGAGACACAGCACTAATGTCTAATCGGAATCTCGAGCATCGTGC 356
************************************ **********************
consensus_627#0 AGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAG 410
consensus_627#1 AGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAG 416
************************************************************
consensus_627#0 AGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATA 470
consensus_627#1 AGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATA 476
************************************************************
consensus_627#0 TATATATATATATATATATACACACACAGATGGGCAGGCCACGGGGGCCCCCTTTCAGCC 530
consensus_627#1 TA------------TATATACACACACAGATGGGCAGGCCACTGGGGCCCC--TTCAGCC 522
** **************************** ******** *******
consensus_627#0 CCTCACCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATT 590
consensus_627#1 CCTTGCCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATT 582
*** *******************************************************
consensus_627#0 CCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTAAGGCAAAACAATAG 650
consensus_627#1 CCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTCGGGCAAAACAATAG 642
********************************************* *************
consensus_627#0 CAAAAACAACAACAACAACAGAAA 674
consensus_627#1 CAAAAACCACAACCACAACAG--- 663
******* ***** *******
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||