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Anopheles gambiae
cluster # 6272 cluster # 6272       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6272#0 length = 1095 sequences # 3  
consensus_6272#1 length = 701 sequences # 2  

consensusID : consensus_6272#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1095
fasta sequence
                              [CCGAAAGTTTGTAGTGGGATTGTGCTCGGTGTGAAAACATGCGATTTCTTCACGTATCGCTTTTGGGAAGATGGTCAAAAGGGCGAAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGCCATGCCGCGAGTTGACGCCGGAGATGAAACATCAGCTGGAGCGGAAGTGGCAGAACAAGCTGGGCGACTGCCGGTTCGACCCTGCCGACACGGTTAAACCGAAACGCTACGTGCTGGCCATGTTTCCGTATCCCTCCGGCAGCCTGCACATGGGCCACGTGCGGGTGTACACGATCAGCGATGCGATGGCCCGGTTTTACCGGCTGAACGGTGCGAACGTGCTGCACCCGATGGGTTGGGATGCGTTCGGGCTGCCGGCGGAGAATGCTGCCATGCAGCGGCGCATTCCGGCCGACACGTGGACGCACCGGAACATTGGTGAGATGCGTAAGCAGCTGGAGCAGCTTGCGTTCAGCTTCGACTGGGAGCGAGAGTTTGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGTTTCTGATGCTGTACAGGGATGGGCTGGCGTACCAGCGGGAAGCACTCGTCAACTGGGACCCGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGATAACGGTTGCTCCTGGCGGTCGGGCGCGAAGGTGGAGAAAAAGGTGCTGCGCCAATGGTTCGTGAAGACGACCCGGTTCGCCAAACCGCTGCTGGAGGGTTTAAGCGATCCGGGGCTGGAAGATTGGAAGGATATCATAAAGCTGCAGCGGCACTGGATCGGCGAGTGCGAGGGATATGCGTTCGAGCTGCCGCTGGTTGGAGAGCACAAGATGAAGAGCATTGCCGTGTGGACTAGCGATCCGGTCGAGCTGGAACGGGCCCTATTTATTGCTATTCATCAGACGAATCTACTGAACACGGCTAAACAAACCGATTGCCTGCTGGAGAACGTTACCGTACAGAATCCGTTCACCGGGGATGTGCTGCCAGTGATCGTAACGGAAGCGGTCGCCTTTCCGGAGGGTTGCGACACCTACCTGGCGGTCGGGAGCGAATCGAATCGGCAGTTAGCGA]

[+] EMBL BM651464             [CCGAAAGTTTGTAGTGGGATTGTGCTCGGTGTGAAAACATGCGATTTCTTCACGTATCGCTTTTGGGAAGATGGTCAAAAGGGCGAAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGCCATGCCGCGAGTTGACGCCGGAGATGAAACATCAGCTGGAGCGGAAGTGGCAGAACAAGCTGGGCGACTGCCGGTTCGACCCTGCCGACACGGTTAAACCGAAACGCTACGTGCTGGCCATGTTTCCGTATCCCTCCGGCAGCCTGCACATGGGCCACGTGCGGGTGTACACGATCAGCGATGCGATGGCCCGGTTTTACCGGCTGAACGGTGCGAACGTGCTGCACCCGATGGGTTGGGATGCGTTCGGGCTGCCGGCGGAGAATGCTGCCATGCAGCGGCGCATTCCGGCCGACACGTGGACGCACCGGAACATTGGTGAGATGCGTAAGCAGCTGGAGCAGCTTGCGTTCAGCTTCGACTGGGAGCGAGAGTTTGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGTTTCTGATGCTGTACAGGGATGGGCTGGCGTACCAGCGGGAAGCACTCGTCAACTGGGACCCGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGATAACGGTTGCTCCTGGCGGTCGGGg                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM631127             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccGCTTCGACTGGGAGCGAGAGTTTGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGTTTCTGATGCTGTACAGGGATGGGCTGGCGTACCAGCGGGAAGCACTCGTCAACTGGGACCCGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGATAACGGTTGCTCCTGGCGGTCGGGCGCGAAGGTGGAGAAAAAGGTGCTGCGCCAATGGTTCGTGAAGACGACCCGGTTCGCCAAACCGCTGCTGGAGGGTTTAAGCGATCCGGGGCTGGAAGATTGGAAGGATATCATAAAGCTGCAGCGGCACTGGATCGGCGAGTGCGAGGGATATGCGTTCGAGCTGCCGCTGGTTGGAGAGCACAAGATGAAGAGCATTGCCGTGTGGACTAGCGATCCGGTCGAGCTGGAACGGGCCCTATTTATTGCTATTCATCAGACGAATCTACTGAACACGGCTAAACAAACCGATTGCCTGCTGGAGAACGTTACCGTACAGAATCCGTTCACCGGGGATGTGCTGCCAGTGATCGTAACGGAAGCGGTCGCCTTTCCGGAGGGTTGCGACACCTACCTGGCGGTCGGGAGCGAATCGAATCGGCAGTTAGCGA]
[+] EMBL BM604440             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGTTTCTGATGCTGTACAGGGATGGGCTGGCGTACCAGCGGGAAGCACTCGTCAACTGGGACCCGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGATAACGGTTGCTCCTGGCGGTCGGGCGCGAAGGTGGAGAAAAAGGTGCTGCGCCAATGGTTCGTGAAGACGACCCGGTTCGCCAAACCGCTGCTGGAGGGTTTAAGCGATCCGGGGCTGGAAGATTGGAAGGATATCATAAAGCTGCAGCGGCACTGGATCGGCGAGTGCGAGGGATATGCGTTCGAGCTGCCGCTGGTTGGAGAGCACAAGATGAAGAGCATTGCCGTGTGGACTAGCGATCCGGTCGAGCTGGAACGGGCCCTATTTATTGCTATTCATCAGACGAATCTACTGAACACGGCTAAACAAACCGATTGCCTGCTGGAGAACGTTACCGTACAGAATCCGTTCACCGGGGATGTGCTGCCAGTGATCGTAACGGAAGCGGTCGCCTTTCCGGAGGGTTGCGACACCTACCTGGCGGTCG                           ]


>consensus_6272#0 CCGAAAGTTTGTAGTGGGATTGTGCTCGGTGTGAAAACATGCGATTTCTTCACGTATCGC TTTTGGGAAGATGGTCAAAAGGGCGAAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGC CATGCCGCGAGTTGACGCCGGAGATGAAACATCAGCTGGAGCGGAAGTGGCAGAACAAGC TGGGCGACTGCCGGTTCGACCCTGCCGACACGGTTAAACCGAAACGCTACGTGCTGGCCA TGTTTCCGTATCCCTCCGGCAGCCTGCACATGGGCCACGTGCGGGTGTACACGATCAGCG ATGCGATGGCCCGGTTTTACCGGCTGAACGGTGCGAACGTGCTGCACCCGATGGGTTGGG ATGCGTTCGGGCTGCCGGCGGAGAATGCTGCCATGCAGCGGCGCATTCCGGCCGACACGT GGACGCACCGGAACATTGGTGAGATGCGTAAGCAGCTGGAGCAGCTTGCGTTCAGCTTCG ACTGGGAGCGAGAGTTTGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGT TTCTGATGCTGTACAGGGATGGGCTGGCGTACCAGCGGGAAGCACTCGTCAACTGGGACC CGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGATAACGGTTGCTCCTGGCGGT CGGGCGCGAAGGTGGAGAAAAAGGTGCTGCGCCAATGGTTCGTGAAGACGACCCGGTTCG CCAAACCGCTGCTGGAGGGTTTAAGCGATCCGGGGCTGGAAGATTGGAAGGATATCATAA AGCTGCAGCGGCACTGGATCGGCGAGTGCGAGGGATATGCGTTCGAGCTGCCGCTGGTTG GAGAGCACAAGATGAAGAGCATTGCCGTGTGGACTAGCGATCCGGTCGAGCTGGAACGGG CCCTATTTATTGCTATTCATCAGACGAATCTACTGAACACGGCTAAACAAACCGATTGCC TGCTGGAGAACGTTACCGTACAGAATCCGTTCACCGGGGATGTGCTGCCAGTGATCGTAA CGGAAGCGGTCGCCTTTCCGGAGGGTTGCGACACCTACCTGGCGGTCGGGAGCGAATCGA ATCGGCAGTTAGCGA



consensusID : consensus_6272#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 701
fasta sequence
                              [ATGCGATTTCTTCACGTATCGCTTTTGGAAAGATGGTCAAAAGGGCGAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGACATGCCGCGAGTTGGCACCGGAACTGGTCCGAAGCGACATTCCCGGGCATTCTGAACTGGCAGAAACGGCTCTGGCTGACGATGTACGATTTCCGGGAGGCGAGGGCAAACATCGATCCCAGCTCAGGCGCACCAACACCAACGCCCGAGTTTACCGAGCACGAGCACAAGCTGTGGGACGCACGGAACTATTTCACCGCCGGTGCAACTTCAACTACCGCCACTCGCACCAGCTGAGCGTGGGCATCTCGAAGATGCAGGGCCTGACGAACGCGATCCGGCGTGCCCCGCCGGCCGTGGTGAGCTACGGCCGACAGTACGAACGGGCACTGGCCGCCCAGATCATTATGCTTGCCCCGATGGCACCCCACTTTGCGGCGGAACTGTGGGAGCAGCTTGCGACGGCACCGCACCGTGTGGATGACGACGCGGCCGGCCTGCGCTGGGACGGTACGGTGTTTGAGCAACGGTGGCCCGAAATCGACGAAGAGTTTCCGCTCGATCTTACCTTTAAGATCAACGGTGCGGAGTGTTGCATACTTAAAATCCCGGCCAAGCGCTTCAACCAGCTGACGCATCAGGAATCGCTCGATCTGGCACTGCGGCAGGAGCCGATCGTG]

[+] EMBL CNS093Z2             [ATGCGATTTCTTCACGTATCGCTTTTGGAAAGATGGTCAAAAGGGCGAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGACATGCCGCGAGTTGGCACCGGAACTGGTCCGAAGCGACATTCCCGGGCATTCTGAACTGGCAGAAACGGCTCTGGCTGACGATGTACGATTTCCGGGAGGCGAGGGCAAACATCGATCCCAGCTCAGGCGCACCAACACCAACGCCCGAGTTTACCGAGCACGAGCACAAGCTGTGGGACGCACGGAACTATTTCACCGCCGGTGCAACTTCAACTACCGCCACTCGCACCAGCTGAGCGTGGGCATCTCGAAGATGCAGGGCCTGACGAACGCGATCCGGCGTGCCCCGCCGGCCGTGGTGAGCTACGGCCGACAGTACGAACGGGCACTGGCCGCCCAGATCATTATGCTTGCCCCGATGGCACCCCACTTTGCGGCGGAACTGTGGGAGCAGCTTGCGACGGCACCGCACCGTGTGGATGACGACGCGGCCGGCCTGCGCTGGGACGGTACGGTGTTTGAGCAACGGTGGCCCGAAATCGACGAAGAGTTTCCGCTCGATCTTACCTTTAAGATCAACGGTGCGGAGTGTTGCATACTTAAAATCCCGGCCAAGCGCTTCAACCAGCTGACGCATCAGGAATCGCTCG                             ]
[+] EMBL BX622713             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTTACCTTTAAGATCAACGGTGCGGAGTGTTGCATACTTAAAATCCCGGCCAAGCGCTTCAACCAGCTGACGCATCAGGAATCGCTCGATCTGGCACTGCGGCAGGAGCCGATCGTG]


>consensus_6272#1 ATGCGATTTCTTCACGTATCGCTTTTGGAAAGATGGTCAAAAGGGCGAGGCACTTGTGTT CCGCGGTCGGACAGTTGACGACATGCCGCGAGTTGGCACCGGAACTGGTCCGAAGCGACA TTCCCGGGCATTCTGAACTGGCAGAAACGGCTCTGGCTGACGATGTACGATTTCCGGGAG GCGAGGGCAAACATCGATCCCAGCTCAGGCGCACCAACACCAACGCCCGAGTTTACCGAG CACGAGCACAAGCTGTGGGACGCACGGAACTATTTCACCGCCGGTGCAACTTCAACTACC GCCACTCGCACCAGCTGAGCGTGGGCATCTCGAAGATGCAGGGCCTGACGAACGCGATCC GGCGTGCCCCGCCGGCCGTGGTGAGCTACGGCCGACAGTACGAACGGGCACTGGCCGCCC AGATCATTATGCTTGCCCCGATGGCACCCCACTTTGCGGCGGAACTGTGGGAGCAGCTTG CGACGGCACCGCACCGTGTGGATGACGACGCGGCCGGCCTGCGCTGGGACGGTACGGTGT TTGAGCAACGGTGGCCCGAAATCGACGAAGAGTTTCCGCTCGATCTTACCTTTAAGATCA ACGGTGCGGAGTGTTGCATACTTAAAATCCCGGCCAAGCGCTTCAACCAGCTGACGCATC AGGAATCGCTCGATCTGGCACTGCGGCAGGAGCCGATCGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6272#0      CCGAAAGTTTGTAGTGGGATTGTGCTCGGTGTGAAAACATGCGATTTCTTCACGTATCGC 60
consensus_6272#1      --------------------------------------ATGCGATTTCTTCACGTATCGC 22
                                                            **********************

consensus_6272#0      TTTTGGGAAGATGGTCAAAAGGGCGAAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGC 120
consensus_6272#1      TTTTGGAAAGATGGTCAAAAGGGCGA-GGCACTTGTGTTCCGCGGTCGGACAGTTGACGA 81
                      ****** ******************* ******************************** 

consensus_6272#0      CATGCCGCGAGTTGACGCCGGAGATGAAACATCAGCTGGAGCGGAAGTGGCAGAACAAGC 180
consensus_6272#1      CATGCCGCGAGTTGGCACCGGAACTG-------GTCCGAAGCGACATTCCCGGG------ 128
                      ************** * *****  **         * * ****  * *  * *       

consensus_6272#0      TGGGCGACTGCCGGTTCGACCCTGCCGACACGGTTAAACCGAAACGCTACGTGCTGGCCA 240
consensus_6272#1      -----------CATTCTGAACTGGCAGAAACGGCT---CTGGCTGACGATGTACGA---- 170
                                 *  *  ** *  ** ** **** *   * *     * * ** *      

consensus_6272#0      TGTTTCCGTATCCCTCCGGCAGCCTGCACATGGGCCACGTGCGGGTGTACACGATCAGCG 300
consensus_6272#1      --TTTCCGGGAGGCGAGGGCAA-----ACATCGATCCCA-------GCTCAGGCGCACCA 216
                        ******     *   ****      **** *  * *        *  ** *  ** * 

consensus_6272#0      ATGCGATGGCCCGGTTTTACCGGCTGAACGGTGCGAACGTGCTGCACCCGATGGGTTGGG 360
consensus_6272#1      ACACCAACGCCCGAGTTTACCGA--GCACGAGCACAAGCTGTGGGACGCACGGAACTATT 274
                      *  * *  *****  *******   * ***     **  **  * ** *   *   *   

consensus_6272#0      ATGCGTTCGGGCTGCCGGCGGAGAATGCTGCCATGCAGCGGCGCATTCCGGCCGACACGT 420
consensus_6272#1      TCACCGCCGGTGCAACTTCAACTACCGCCACT-CGCACCAGCTGAGCGTGGGCATCTCGA 333
                         *   ***     *  *    *  **  *   *** * **  *    ** *  * ** 

consensus_6272#0      GGACGCACCGGAACATTGGTGAGATGCGTAAGCAGCTGGAGCAGCTTGCGTTCAGCTTCG 480
consensus_6272#1      AGATGCAGGGCCTGACGAACGCGATCCG---GCGTGCCCCGCCGGCCGTGGTGAGCTACG 390
                       ** ***  *    *     * *** **   **       ** *   * * * **** **

consensus_6272#0      ACTGGGAGCGAGAGTTTGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGT 540
consensus_6272#1      GCCGACAGTACGAACGGGC-ACTGGCCGCCCAGATCATTAT-GCTTGCCCCGATGGCACC 448
                       * *  **   **    ** **  ***  ** **  * **  *** * * *    **   

consensus_6272#0      TTCTGATGCTGTACAGGGATGGGC-TGGCGTACCAGCGGGAAGCACT-CGTCAACTGGGA 598
consensus_6272#1      CCACTTTGCGGCGGAACTGTGGGAGCAGCTTGCGACGGCACCGCACCGTGTGGATGACGA 508
                            *** *   *    ****    ** * * *  *    ****   **  *    **

consensus_6272#0      CCCGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGA-TAACGGTTGCTCCTGGC 657
consensus_6272#1      CGCGGCCG----GCCTGCGCTGG--GACGGTACGGTGTTTGAGCAACGGTGGCCC---GA 559
                      * *** **    * * * *****  ****    ****   **  ****** ** *   * 

consensus_6272#0      GGTCGGGCGCGAAGGTGGAGAAAAAGGTGCTGCGCCAATGGTTCGTGAAGACGACCCGGT 717
consensus_6272#1      AATCGACGAAGAGTTTCCGCTCGATCTTACCTTTAAGATCAACGGTGCGGAGTGTTGCAT 619
                        ***     **   *       *   * *       **     ***  **        *

consensus_6272#0      TCGCCAAACCGCTGCTGGAGGGTTTAAGCGATCCGGGGCTGGAAGATTGGAAGGATATCA 777
consensus_6272#1      ACTTAAAATCCCGGCCA-AGCGCTTCAACCAGCTGACGCATCAGGAATCGCTCGATCTGG 678
                       *   *** * * **   ** * ** * * * * *  **   * ** * *   *** *  

consensus_6272#0      TAAAGCTGCAGCGGCACTGGATCGGCGAGTGCGAGGGATATGCGTTCGAGCTGCCGCTGG 837
consensus_6272#1      CA---CTGCGGCAGGAGCCGATCGTG---------------------------------- 701
                       *   **** ** * *   *****                                    

consensus_6272#0      TTGGAGAGCACAAGATGAAGAGCATTGCCGTGTGGACTAGCGATCCGGTCGAGCTGGAAC 897
consensus_6272#1      ------------------------------------------------------------
                                                                                  

consensus_6272#0      GGGCCCTATTTATTGCTATTCATCAGACGAATCTACTGAACACGGCTAAACAAACCGATT 957
consensus_6272#1      ------------------------------------------------------------
                                                                                  

consensus_6272#0      GCCTGCTGGAGAACGTTACCGTACAGAATCCGTTCACCGGGGATGTGCTGCCAGTGATCG 1017
consensus_6272#1      ------------------------------------------------------------
                                                                                  

consensus_6272#0      TAACGGAAGCGGTCGCCTTTCCGGAGGGTTGCGACACCTACCTGGCGGTCGGGAGCGAAT 1077
consensus_6272#1      ------------------------------------------------------------
                                                                                  

consensus_6272#0      CGAATCGGCAGTTAGCGA 1095
consensus_6272#1      ------------------
                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)