These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCGGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTCGCTAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGCAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGCGTGTGTGTGTCTGTGCGTATCAAAGGCGAAAGTGGACCCCGTGAAGGAGACCAAACACTAAACGAGTTTGCTTTCTCCTCCCACTTCCCTCCTACAGTGTCTCGCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATTCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCCGCGGACCAGCAACATCCGCCACGCTACAAACATGAGTCTGTTCGGAACGACGTCCACACTCAACGCCGATATAGAGAAAACGACAAGCGAAAACAATACGACG] [+] EMBL BM642853 [CCGGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTCGCTAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGCAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGCGTGTGTGTGTCTGTGCGTATCAAAGGCGAAAGTGGACCCCGTGAAGGAGACCAAACACTAAACGAGTTTGCTTTCTCCTCCCACTTCCCTCCTACAGTGTCTCGCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATTCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCCGCGGACCAGCAACATCCGCCACGCTACAAACATGAGTCTGTTCGGAACGACGTCCACACTCAACGCCGATATAGAGAAAACGACAAGCGAAAACAATACGACG] consensusID : consensus_6276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 541 fasta sequence [CCGATTTTGGTCGATTTGATTCATCATCGCCTTTTGGGTAGAGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTAGGCACCCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCCAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGGCGTGTGTGTGTCTTGTCGCTCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATATCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCC] [+] EMBL BM621539 [CCGATTTTGGTCGATTTGATTCATCATCGCCTTTTGGGTAGAGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTAGGCACCCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCCAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGGCGTGTGTGTGTCTTGTCGCTCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATATCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCC] [+] EMBL BM637480 [CCGATTTTGGTCGATTTGATTCATCATCGCCTTTTGGGTAGAGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTAGGCACCCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCCAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTG ] [+] EMBL BM628133 [ ccgGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTCGCTAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGCAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGC AAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGT GCGTGTGTGTGTCTTGTCTCGCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCAT TCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCACTGCAGGG ] consensusID : consensus_6276#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [CCGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCTGAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCAAACCAAGGGGAGCAGCAAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAAAAACACAAATCCTTCCCGCCCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGCGTGTGTGTGTGTGTGTTTGTGCGTATCGAAGGCGAAAGTGGACCCCGTGCTGTGAAGGAGACCAAACACTAAACCAGTTTGCTTTCTCCTCCCACTTCCCTCCTACAGTGTCTCGCTCGGTGCAGTGATAAGCGGGCG] [+] EMBL BM634814 [CCGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCTGAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCAAACCAAGGGGAGCAGCAAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAAAAACACAAATCCTTCCCGCCCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGCGTGTGTGTGTGTGTGTTTGTGCGTATCGAAGGCGAAAGTGGACCCCGTGCTGTGAAGGAGACCAAACACTAAACCAGTTTGCTTTCTCCTCCCACTTCCCTCCTACAGTGTCTCGCTCGGTGCAGTGATAAGCGGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6276#0 ---------------------------------------CCGGGAAAAAGTTGAAATTCC 21 consensus_6276#2 -----------------------------------------CCGAAAAAGTTGAAATTCC 19 consensus_6276#1 CCGATTTTGGTCGATTTGATTCATCATCGCCTTTTGGGTAGAGGAAAAAGTTGAAATTCC 60 ***************** consensus_6276#0 CGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTC 81 consensus_6276#2 CGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTC 79 consensus_6276#1 CGGAGCACATCACAACATTTTCGGGCCGCGAAATTAGGCACCCTTGCCGTGTAGTGTGTC 120 ************************************ *********************** consensus_6276#0 GCTAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAA 141 consensus_6276#2 GCCAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCTGAAGCGTGTGCGTGTGAAA 139 consensus_6276#1 GCCAAGATTGAGCCAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAA 180 ** ********** ************************** ******************* consensus_6276#0 GCAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATAC-AAAGGGAGCA 200 consensus_6276#2 GTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCAAACCAAGGGGAGCA 199 consensus_6276#1 GTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATAC-AAAGGGAGCA 239 * ******************************************** ** ** ******* consensus_6276#0 GCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGA 260 consensus_6276#2 GCAAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGA 259 consensus_6276#1 GCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGA 299 ** ********************************************************* consensus_6276#0 AAAGCAAAAAAAA---CACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCC 317 consensus_6276#2 AAAGCAAAAAAAAAAACACAAATCCTTCCC------------GCCCAGTGGGTCCTAGCC 307 consensus_6276#1 AAAGCAAAAAAAAAA-CACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCC 358 ************* ************** ** *************** consensus_6276#0 GAAGAAAGTGATCCGTGTGCGTGTGTGTGT------CTGTGCGTATCAAAGGCGAAAGTG 371 consensus_6276#2 GAAGAAAGTGATCCGTGTGCGTGTGTGTGTGTGTGTTTGTGCGTATCGAAGGCGAAAGTG 367 consensus_6276#1 GAAGAAAGTGATCCGTGTG-GCGTGTGTGTGTCTTGTCGCTCTCGGTGCAGTGATAAGCG 417 ******************* * ******** * * ** *** * consensus_6276#0 GACCCCGTG------AAGGAGACCAAACACTAAA----CGAGTTTGCTTTCTCCTCCCAC 421 consensus_6276#2 GACCCCGTGCT-GTGAAGGAGACCAAACACTAAA----CCAGTTTGCTTTCTCCTCCCAC 422 consensus_6276#1 GGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATATCGGGGTCTGTGCTTAT 477 * * ** * * * ** **** * * * * * *** * * consensus_6276#0 TTCCCTCCTACAGTGTCTCGCT-CGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACA 480 consensus_6276#2 TTCCCTCCTACAGTGTCTCGCT-CGGTGCAGTGATAAGCGGGCG---------------- 465 consensus_6276#1 TGGCCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCG 537 * ** ** ** * ** * * * ** * *** consensus_6276#0 ATCCCCACACCCGAACCTCCATTCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCAC 540 consensus_6276#2 ------------------------------------------------------------ consensus_6276#1 ATCC-------------------------------------------------------- 541 consensus_6276#0 TGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCCGCGGACCAGCAACATCC 600 consensus_6276#2 ------------------------------------------------------------ consensus_6276#1 ------------------------------------------------------------ consensus_6276#0 GCCACGCTACAAACATGAGTCTGTTCGGAACGACGTCCACACTCAACGCCGATATAGAGA 660 consensus_6276#2 ------------------------------------------------------------ consensus_6276#1 ------------------------------------------------------------ consensus_6276#0 AAACGACAAGCGAAAACAATACGACG 686 consensus_6276#2 -------------------------- consensus_6276#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||