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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 886 fasta sequence
[CCGCCCACGCGTCCGGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTACTGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNGTAATTATTTCCGATTTTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCCAGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN]
[+] EMBL BM585337 [CCGCCCACGCGTCCGGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACT ]
[+] EMBL BX629265 [ GATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTACTGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNGTAATTATTTCCGATTTTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCCAGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN]
[+] EMBL BX629158 [ ACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTACTGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNGTAATTATTTCCGATTTTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCCAGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN]
[+] EMBL BX615715 [ GTGGAAATAATGCTCATCTGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGAGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGGGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTAGATGTAACTGGTACTTCTGTTACTGCTCAAGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGTATAATTATTTCCGA ]
consensusID : consensus_6278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[GGCAAGAATTCGGCACGNTGTGGGAAATCAAGATAATTTAATTCGAATTGTACGGGGACAAGCAGGTGTTTTGATCAATAATCAACGAGTTCAACCACCGGCCCCGGCAGCAGACAGACCCGAAGGGCAAGGTTCTCCGCCCCCACACTTAGAAGCGCGAAGAGTACGTGCTGTAAGTCCCGCAGACGAACAAAATCAACAGGTAGAACCCATAAGAAATGACGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAAGCGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAAGTTGC]
[+] EMBL BX468542 [GGCAAGAATTCGGCACGNTGTGGGAAATCAAGATAATTTAATTCGAATTGTACGGGGACAAGCAGGTGTTTTGATCAATAATCAACGAGTTCAACCACCGGCCCCGGCAGCAGACAGACCCGAAGGGCAAGGTTCTCCGCCCCCACACTTAGAAGCGCGAAGAGTACGTGCTGTAAGTCCCGCAGACGAACAAAATCAACAGGTAGAACCCATAAGAAATGACGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAAGCGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAAGTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6278#0 CCGCCCACGCGTCCGGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATT 60
consensus_6278#1 ------------------------------------------------------------
consensus_6278#0 ATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTT 120
consensus_6278#1 ------------------------------------------------------------
consensus_6278#0 TTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGA 180
consensus_6278#1 ------------------------------------------------------------
consensus_6278#0 AATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCAT 240
consensus_6278#1 ------------------------------------------------------------
consensus_6278#0 GATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCAT 300
consensus_6278#1 ------------------------------------------------------------
consensus_6278#0 GATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCA 360
consensus_6278#1 ----------------------GGCAAGA-ATTCGGCACGNTGTGGGAAATCAAGATAAT 37
*** * * ** **** ** * * **
consensus_6278#0 CAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTC 420
consensus_6278#1 TTAATTCGAATTGTACGGGGACAAGCAGGTGTTTTGATCAATAATCAACGAGTTCAACCA 97
* * * ** * *** * * * ** ** * *** * ** *
consensus_6278#0 CCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGT 480
consensus_6278#1 CCGGCC-CCGGCAGCAGACAGACCCGAAG--GGCAAGGTTCTCCGCCCCCACACTTAGAA 154
** ** * * * * * * **** * ** * * * ****
consensus_6278#0 GCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTAC 540
consensus_6278#1 GCGCGA-----------AGAGTACGTGCTGTAAGTC-----CCGCAGA-------CGAAC 191
** * * * ***** ** * ** ** ** ** **
consensus_6278#0 GGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTT 600
consensus_6278#1 AAAAT-CAACAGGTAGAACCCATAAGAAAT-----GACGAAAATAAT-CATAACAATGTG 244
*** ** **** ** * **** * *** ***** *
consensus_6278#0 ACCGGACTGGAAAGATTGTCTGTGCGAA-ATTATAAGCTTGTGACGGACATATCGTTGGA 659
consensus_6278#1 GATCGAC--AACACATTGTGCGTATTATTAATAGAGATTTGCTACTG-CAAGCGTAGAGA 301
*** * * ***** ** * * ** * *** ** * ** **
consensus_6278#0 CCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTAC 719
consensus_6278#1 GCATGTCGAATTAGAAAATCCTCC------ACTTTTACGTCGAGCTGGTGATCAAATCAA 355
*** ****** ** ** * ****** * * ***** * * *
consensus_6278#0 TGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNG-TAATTATTTCCGATT 778
consensus_6278#1 TGCTGCATATCAACATATTTTTGA---TGCTCGTGGAAATAATGCTCATCGGCCCC--CT 410
**** ** * ** * * ***** * * * ** ** *
consensus_6278#0 TTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCC 838
consensus_6278#1 GTGCTTGAACTCCAACCTGAAAGTTGC--------------------------------- 437
** ** ** * *** * *
consensus_6278#0 AGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN 886
consensus_6278#1 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||