These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCGGTCATTTTGGACTATGCAAAACCATGCACGCCATAAAACAACGGTATTTTATACCGCATTTAGAGCGAAAAGTGAAACTGATTCTCAACAGCTGTGTGAAGTGTATCATCCACAATAAGAAGTTAGGACGAAAGGAAGGGTTCCTGCACCCCATTGACAAGGGAGATCAGCCACTGCAAACCCTTCACCTCGATCATGTAGGGCCGATGGACGCCACGGGAAAGCAGTACAAATACGTTTTGACTGTAGTGGATGGTTTTTCCAAGTTCGTCTGGTTGTACCCGACAAAAACGACTGGAGCGGAGGAAACGTTGAGGAAGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCTCAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCGTTTGTACAACAGGAGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATGTTATCGGTTTTGACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCCTTCTGTGCAGCGAGCGATTAACTCTCATATTCACGTAGCAGCTGGAAAGTCGCCATTCGAGTTGATGTTCGGGACAAAGATGAGGACGTCGGAGGTGGAAGACTTGTCGCGGTTACTGGAGGAGG] [+] EMBL BM579723 [CCGGTCATTTTGGACTATGCAAAACCATGCACGCCATAAAACAACGGTATTTTATACCGCATTTAGAGCGAAAAGTGAAACTGATTCTCAACAGCTGTGTGAAGTGTATCATCCACAATAAGAAGTTAGGACGAAAGGAAGGGTTCCTGCACCCCATTGACAAGGGAGATCAGCCACTGCAAACCCTTCACCTCGATCATGTAGGGCCGATGGACGCCACGGGAAAGCAGTACAAATACGTTTTGACTGTAGTGGATGGTTTTTCCAAGTTCGTCTGGTTGTACCCGACAAAAACGACTGGAGCGGAGGAAACGTTGAGGAAGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCTCAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCGTTTGTACAACAGGAGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATGTTATCGGTTTTGACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCCTTCTGTGCAGCGAGCGATTAACTCTCATATTCACGTAGCAGCTGGAAAGTCGCCATTCGAGTTGATGTTCGGGACAAAGATGAGGACGTCGGAGGTGGAAGACTTGTCGCGGTTACTGGAGGAGG] consensusID : consensus_629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGGACGTTGAATACGAAATCGGTTTGCTGGTGGTCTCTCCAAATTCGATGAAGGTTCCAATGCTGGTAGGCATGAATTTTCTTCGAAGTGTTTGTTACGCTATAACCAACGATGGAGTGCAGATTTTTAAGAAAAAAAGTGACAACGAGGAATCGGGTAGCGATCACGAAAGTGCTGTGTATAAGATTGATTGTGAACAAATCCAAGAACTGGAAGTGCCGGGTAAGTTTCGAGACAAGGTACAAGCGCTGAAAAGTCAATACGAAGCTTCAGTGGTGGATAATTACGAAGACAATTGTCCCATACAAATGAAGATAGTGTTGGAAGAAAACGCGTCACCTTTTCGGCATACGCCCCGTCGCTTGCCTTTAATGGAGGAAGAAGCAGTCGAAAACCATGTAGGGGAATGGTTGAGGAAGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCTCAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCGTTTGTACAACAGGGAGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATGTTATCGGTTTTTGACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCCTTCTGTGCAG] [+] EMBL BM654773 [CCGGACGTTGAATACGAAATCGGTTTGCTGGTGGTCTCTCCAAATTCGATGAAGGTTCCAATGCTGGTAGGCATGAATTTTCTTCGAAGTGTTTGTTACGCTATAACCAACGATGGAGTGCAGATTTTTAAGAAAAAAAGTGACAACGAGGAATCGGGTAGCGATCACGAAAGTGCTGTGTATAAGATTGATTGTGAACAAATCCAAGAACTGGAAGTGCCGGGTAAGTTTCGAGACAAGGTACAAGCGCTGAAAAGTCAATACGAAGCTTCAGTGGTGGATAATTACGAAGACAATTGTCCCATACAAATGAAGATAGTGTTGGAAGAAAACGCGTCACCTTTTCGGCATACGCCCCGTCGCTTGCCTTTAATGGAGGAAGAAGCAGTCGAAAACCATGTAGGGGAATGGTTGAGGAAGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCTCAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCGTTTGTACAACAGGGAGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATGTTATCGGTTTTTGACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCCTTCTGTGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_629#0 ------------------------------------------------------------ consensus_629#1 CCGGACGTTGAATACGAAATCGGTTTGCTGGTGGTCTCTCCAAATTCGATGAAGGTTCCA 60 consensus_629#0 ---CCGGTCATTTTGGACTAT----GCAAAACCATGCACGCCATAAAACAACGGTATTTT 53 consensus_629#1 ATGCTGGTAGGCATGAATTTTCTTCGAAGTGTTTGTTACGCTATAAC-CAACGATGGAGT 119 * *** ** * * * * * **** **** ***** * * consensus_629#0 ATACCGCATTTAGAGCGAAAAGTGAAACTGATT--CTCAACAGCTGTGTGAAGTGTATCA 111 consensus_629#1 GCAG-ATTTTTAAGAAAAAAAGTGACAACGAGGAATCGGGTAGCGATCACGAAAGTGCTG 178 * **** ******** * ** *** * * ** consensus_629#0 TCCACAATAAGAAGTTAGGACGAA---AGGAA---GGGTTCCTGCACCCCATTGACAAGG 165 consensus_629#1 TGTATAAGATTGATTGTGAACAAATCCAAGAACTGGAAGTGCCGGGTAAGTTTCGAGACA 238 * * ** * * * * ** ** * *** * * * * ** * consensus_629#0 GAGATCAGCCACTGCAAACCCTTCAC-----CTCGATCATGTAGGGC--CGATGGACGCC 218 consensus_629#1 AGGTACAAGCGCTGAAAAGTCAATACGAAGCTTCAGTGGTGGATAATTACGAAGACAATT 298 * ** * *** *** * ** ** * ** * *** * consensus_629#0 ACGGGAAAGCAGTACAAATACGTTTTGACTGTAGTGGATGGTTTTTCCAA-GTTCGTCTG 277 consensus_629#1 GTCCCATACAAATGAAGATAGTGTTGGAAGAAAACGCGTCACCTTTTCGGCATACGCCCC 358 * * * * * *** ** ** * * * *** * * ** * consensus_629#0 GTTG--TACCC--------GACAAAAACGACTGGA------GCGGAGGAAACGTTGAGGA 321 consensus_629#1 GTCGCTTGCCTTTAATGGAGGAAGAAGCAGTCGAAAACCATGTAGGGGAATGGTTGAGGA 418 ** * * ** * * ** * * * * * **** ******** consensus_629#0 AGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCT 381 consensus_629#1 AGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCT 478 ************************************************************ consensus_629#0 CAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCG 441 consensus_629#1 CAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCG 538 ************************************************************ consensus_629#0 TTTGTACAACAGG-AGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATG 500 consensus_629#1 TTTGTACAACAGGGAGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATG 598 ************* ********************************************** consensus_629#0 TTATCGGTTTT-GACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCC 559 consensus_629#1 TTATCGGTTTTTGACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCC 658 *********** ************************************************ consensus_629#0 TTCTGTGCAGCGAGCGATTAACTCTCATATTCACGTAGCAGCTGGAAAGTCGCCATTCGA 619 consensus_629#1 TTCTGTGCAG-------------------------------------------------- 668 ********** consensus_629#0 GTTGATGTTCGGGACAAAGATGAGGACGTCGGAGGTGGAAGACTTGTCGCGGTTACTGGA 679 consensus_629#1 ------------------------------------------------------------ consensus_629#0 GGAGG 684 consensus_629#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||