These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1554 fasta sequence [AGGGCAAATCACAAAATCTACGGGTGCCATACTATTATCGTGTAAGTGTACGGATACACACTACCAGTACACGAGAGCATACAATACCAGTCAATTAGTATTAGCCGTTTTCTCGTTCATGACTTGATGAGGTTTTGTTTTGTTTTTTTTTTATTTACATTTCATCTATTTACCCTTAATCTCACCTAGTGATTAGTTACGGTACATCAATCTCGTTTAATGTAAAACGGTAAATACTTAGTCTTCCTCTTAGCGTTCTATCTGTTTTGTGTTGCGCCGGGAGTGTTACATTTGCCATGCAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTTAAATAATTAATATATTCTTGCTTTGAACGTACGCACGCCATCTGTTCCGCGTACTCGTACTAGCACACTCAAGAAGATCCT-CCGGACAAGACCCTAGGGCCC---TTTCTTCCCGGTTAGATCTCCCATCCCTTCGTTCTTCTAAAGGCCATTTAACAGCAACAGCCTCCACAAACAGCAACAACAACAACCAAGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAATCGACCGAAAGCTTACTGTGAAATCTA-GGATATAGGATATGATAGAGGTACGATAATTGCTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGCACACCCACAGCAGCCGACTGCAATGTGCAATGTGTGTTCGTCGTGCAGTGTGTGTGCACTACGACACTACGAGTATATATTATATATATTTATCAAACTAACACTGGTCAGGAGCCTTAAGCAGAAGAGGAAAGGAGAGGCCTTCTGTTACGCTGGACAAGTGAGCAGCTTCCCAAGGTGGTTTATAGCATAGAAGGTAAAGTATCGGCTAAGGCAAACATTCAAACTGTATACCATTTTAAAAGCAAACTCATCTCGTTCACCTCCCCTCCCATTGGAACAATTAGAGCCTTTCAAACAGCCTTTGAGAGCA--GTGTGTGTGTTTGCTGCTGCTTGGTTGGTCTTCTCAGTTGGTTATATACTCAGGTGGCTGGGCGTGCTGCTTTTGGCACGAATATTTGGAAGCTTCACTTGTTTTGTCCCAAACCATCCACATTCCCTCTCTCTCATCTTCTTACCGCAGAGGGGACGAAGGGCAGGAAAGGAGGACGGCTTAATCGAACCGCCTATTCCTTCCGATCCATCCAGAAGACGAGAACTGGGGATGGAGGATGCAAACAAAAATGCAAAATGTGTGAAGCTAACATCAAATCCATTCGAAAAGCTGCCACTAACGCCACCAAATCCATCGCATGCCTTACTGTAAGAACTGTGAGCGGAAAAAAAGATATTTAGCAGTACAGTTTAAAATTCATTATCAAAACTGGATAAAATGCCTTCCTATTTGGATGAATAGGTTATAATGCATGTTACTAGTTATTTCGTCAAAAGAGAAACAAACAAACCCGAACGAAAGAGAATTTCAAAAGAAAAACAACAACGCCAAGAAGAAAGAAAACATTACTAAACAAAACATAAA] [+] EMBL BX629012 [AGGGCAAATCACAAAATCTACGGGTGCCATACTATTATCGTGTAAGTGTACGGATACACACTACCAGTACACGAGAGCATACAATACCAGTCAATTAGTATTAGCCGTTTTCTCGTTCATGACTTGATGAGGTTTTGTTTTGTTTTTTTTTTATTTACATTTCATCTATTTACCCTTAATCTCACCTAGTGATTAGTTACGGTACATCAATCTCGTTTAATGTAAAACGGTAAATACTTAGTCTTCCTCTTAGCGTTCTATCTGTTTTGTGTTGCGCCGGGAGTGTTACATTTGCCATGCAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTTAAATAATTAATATATTCTTGCTTTGAACGTACGCACGCCATCTGTTCCGCGTACTCGTACTAGCACACTCAAGAAGATCCTCCCGGACAAGACCCTAGGGCCCTCTTTTCTTCCCGGTTAGATCTCCCATCCCTTCGTTCTTCTAAAGGCCATTTAACAGCAACAGCCTCCACAAACAGCAACAACAACAACCAAGACCAATTTAATATTAGCTAGATTTGGATTACT ] [+] EMBL AL932449 [ gtacttgcACGCTAAGGCCC TTTCTTCCCAGTTAGATCTCCCATCCCTTCGTTCTTCTAAAGGCCATTTAACAGCAACAGCCTCCACAAACAGCAACAACAACAACCAAGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAATCGACCGAAAGCTTACTGTGAAATCTAGGGATATAGGATATGATAGAGGTACGATAATTGCTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGCACACCCACAGCAGCCGACTGCAATGTGCAATGTGTGTTCGTCGTGCAGTGTGTGTGCACTACGACACTACGAGTATATATTATATATATTTATCAAACTAACACTGGTCAGGAGCCTTAAGCAGAAGAGGAAAGGAGAGGCCTTCTGTTACGCTGGACAAGTGAGCAGCTTCCCAAGGTGGTTTATAGCATAGAAGGTAAAGTATCGGCTAAGGCAAACATTCAAACTGTATACCATTTTAAAAGCAAACTCATCTCGTTCACCTCCCCTCCCATTGGAACAATT ] [+] EMBL BX628659 [ AATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAATCGACCGAAAGCTTACTGTGAAATCTA GGATATAGGATATGATAGAGGTACGATAATTGCTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGCACACCCACAGCAGCCGACTGCAATGTGCAATGTGTGTTCGTCGTGCAGTGTGTGTGCACTACGACACTACGAGTATATATTATATATATTTATCAAACTAACACTGGTCAGGAGCCTTAAGCAGAAAAGGAAAGGAGAGGCCTTCTGTTACGCTGGGCAAGTGAGCAGCTTCCCAAGGTGGTTTACAGAATAGAAGGTAGAGTGTCGGCTAAGGCAAACATTCAAACTGTATACCATTTTAAAAGCAAACTCATCTCGTTCACCTCCCCTGCCATTGGAACAATTAGAGCCTTTCAAACAGCCTTTGAGAGCA GTGTGTGTGTTTGCTGCTGCTTGGTTGGTCTTCTCAGTTGGTTATATACTCAGGTGGCTGGGCGTGCTGCTTTTGGCACGAATATTTGGAAGCTTCACTTGTTTTGTCCCAAACCATCCACATTCCCTCTCTCTCATCTTCTTACCGCAGAGGGGACGAAGGGCAGGAAAGGAGGACGGCTTAATCGAACCGCCTATTCCTTCCGATCCATCCAGAAGACGAGAACTGGGGATGGAGGATGCAAACAAAAATGCAAAATGTGTGAAGCTAACATCAAATCCATTCGAAAAGCTGCCACTAACGCCACCAAATCCATCGCATGCCTT ] [+] EMBL BX612437 [ TATCGGCTAAGGCAAACATTCAAACTGTATACCATTTTAAAAGCAAACTCATCTCGTTCACCTCCCCTCCCATTGGAACAATTAGAGCCTTTCAAACAGCCTTTGAGAGCAGTGTGTGTGTGTTTGCTGCTGCTTGGTTGGTCTTCTCAGTTGGTTATATACTCAGGTGGCTGGGCGAGCTGCTTTTGGCACGAATATTTGGAAGCTTCACTTGTTTTGTCCCAAACCATCCACATTCCCTCTCTCTCATCTTCTTACCGCAGAGGGGAGGAAGGACAGGAAAGGAGGACGGCTTAATCGAACCGCCTATTCCTTCCGATCCATCCAGAAGACGAAAACTGGGGATGGAGGATGCAAACAAAAATGCAAAATGTGTGAAGCTAACATCAAATCCATTCGAAAAGCTGCCACTAACGCCACCAAATCCATCGCATGCCTTACTGTAAGAACTGTGAGCGGAAAAAAAGATATTTAGCAGTACAGTTTAAAATTCATTATCAAAACTGGATAAAATGCCTTCCTATTTGGATGAATAGGTTATAATGCATGTTACTAGTTATTTCGTCAAAAGAGAAACAAACAAACCCGAACGAAAGAGAATTTCAAAAGAAAAACAACAACGCCAAGAAGAAAGAAAACATTACTAAACAAAACATAAA] consensusID : consensus_6307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [GCAGAATCGGCACGTAGAGAGCGTCTACCTGGTTTTGTCGTTGCGCCGGGAGTGTTACATTTGCCATGCAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTTTAAATAATTAATATATTCTTGCTTTGAACGTACGCGCGCCATCTGTTCCGCGTACTCGTACTTGCACACTCAAGAAGATCCCCCCGACAAGACGCTAGGGCCCTCTTTCTTCCCGGTTAGATCTCCCATCCCTTCGTTCTTCTAAAGGCCATTTAACAGCAACAGGCTCCACAAACAGCAACAACAACAACCAAGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAATCGACCGAAAGCTTACTGTGAAATCTAGGATATAGGATATGATACGAGGTACGATAATTGCTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGGACACCCACAGAAGCCGACTGCAATGTGCAATGTGTTGTCACGTCGTGCAGNGTGTGTGCACTACGACGACTACGAGTATATACTTCATATACTATGTATCACAACTTAACAACTGGTCAGGAGCCTTAAGCAGNAGGAAGGAACACGGANAGTGGCCTTACTGTTACGCTGGGCAAGGTTGGTGCNACGTTTCCCAAAGGTGGTTGATANGCACT] [+] EMBL BX467514 [GCAGAATCGGCACGTAGAGAGCGTCTACCTGGTTTTGTCGTTGCGCCGGGAGTGTTACATTTGCCATGCAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTTTAAATAATTAATATATTCTTGCTTTGAACGTACGCGCGCCATCTGTTCCGCGTACTCGTACTTGCACACTCAAGAAGATCCCCCCGACAAGACGCTAGGGCCCTCTTTCTTCCCGGTTAGATCTCCCATCCCTTCGTTCTTCTAAAGGCCATTTAACAGCAACAGGCTCCACAAACAGCAACAACAACAACCAAGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAATCGACCGAAAGCTTACTGTGAAATCTAGGATATAGGATATGATACGAGGTACGATAATTGCTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGGACACCCACAGAAGCCGACTGCAATGTGCAATGTGTTGTCACGTCGTGCAGNGTGTGTGCACTACGACGACTACGAGTATATACTTCATATACTATGTATCACAACTTAACAACTGGTCAGGAGCCTTAAGCAGNAGGAAGGAACACGGANAGTGGCCTTACTGTTACGCTGGGCAAGGTTGGTGCNACGTTTCCCAAAGGTGGTTGATANGCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6307#0 AGGGCAAATCACAAAATCTACGGGTGCCATACTATTATCGTGTAAGTGTACGGATACACA 60 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 CTACCAGTACACGAGAGCATACAATACCAGTCAATTAGTATTAGCCGTTTTCTCGTTCAT 120 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 GACTTGATGAGGTTTTGTTTTGTTTTTTTTTTATTTACATTTCATCTATTTACCCTTAAT 180 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 CTCACCTAGTGATTAGTTACGGTACATCAATCTCGTTTAATGTAAAACGGTAAATACTTA 240 consensus_6307#1 --------------------------------------------GCAGAATCGGCACGTA 16 * * ** ** consensus_6307#0 GTCTTCCTCTTAGCGTTCTATCTGTTTTGT-GTTGCGCCGGGAGTGTTACATTTGCCATG 299 consensus_6307#1 GAG--------AGCGTCTACCTGGTTTTGTCGTTGCGCCGGGAGTGTTACATTTGCCATG 68 * ***** ******* ***************************** consensus_6307#0 CAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTT-AAATAATTAATA 358 consensus_6307#1 CAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTTTAAATAATTAATA 128 *********************************************** ************ consensus_6307#0 TATTCTTGCTTTGAACGTACGCACGCCATCTGTTCCGCGTACTCGTACTAGCACACTCAA 418 consensus_6307#1 TATTCTTGCTTTGAACGTACGCGCGCCATCTGTTCCGCGTACTCGTACTTGCACACTCAA 188 ********************** ************************** ********** consensus_6307#0 GAAGATCCTCCGGACAAGACCCTAGGGCCCT--TTCTTCCCGGTTAGATCTCCCATCCCT 476 consensus_6307#1 GAAGATCCCCCCGACAAGACGCTAGGGCCCTCTTTCTTCCCGGTTAGATCTCCCATCCCT 248 ******** ** ******** ********** *************************** consensus_6307#0 TCGTTCTTCTAAAGGCCATTTAACAGCAACAGCCTCCACAAACAGCAACAACAACAACCA 536 consensus_6307#1 TCGTTCTTCTAAAGGCCATTTAACAGCAACAGGCTCCACAAACAGCAACAACAACAACCA 308 ******************************** *************************** consensus_6307#0 AGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAA 596 consensus_6307#1 AGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAA 368 ************************************************************ consensus_6307#0 TCGACCGAAAGCTTACTGTGAAATCTAGGATATAGGATATGATA-GAGGTACGATAATTG 655 consensus_6307#1 TCGACCGAAAGCTTACTGTGAAATCTAGGATATAGGATATGATACGAGGTACGATAATTG 428 ******************************************** *************** consensus_6307#0 CTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGCACACCCACAGCAGCCGACTG 715 consensus_6307#1 CTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGGACACCCACAGAAGCCGACTG 488 *************************************** ********** ********* consensus_6307#0 CAATGTGCAATGTGTGTTC--GTCGTGCAGTGTGTGTGCACTACGAC-ACTACGAGTATA 772 consensus_6307#1 CAATGTGCAATGTGTTGTCACGTCGTGCAGNGTGTGTGCACTACGACGACTACGAGTATA 548 *************** ** ********* **************** ************ consensus_6307#0 TATTATATATATT---TATCAAA--CTAACA-CTGGTCAGGAGCCTTAAGCAGAAG--AG 824 consensus_6307#1 TACTTCATATACTATGTATCACAACTTAACAACTGGTCAGGAGCCTTAAGCAGNAGGAAG 608 ** * ***** * ***** * ***** ********************* ** ** consensus_6307#0 GAA----AGGAGAGGCCTT-CTGTTACGCTGGACAAG-----TGAGCAGCTTCCCAA-GG 873 consensus_6307#1 GAACACGGANAGTGGCCTTACTGTTACGCTGGGCAAGGTTGGTGCNACGTTTCCCAAAGG 668 *** ** ****** ************ **** ** * ******* ** consensus_6307#0 TGGTTTATAG-CATAGAAGGTAAAGTATCGGCTAAGGCAAACATTCAAACTGTATACCAT 932 consensus_6307#1 TGGTTGATANGCACT--------------------------------------------- 683 ***** *** ** consensus_6307#0 TTTAAAAGCAAACTCATCTCGTTCACCTCCCCTCCCATTGGAACAATTAGAGCCTTTCAA 992 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 ACAGCCTTTGAGAGCAGTGTGTGTGTTTGCTGCTGCTTGGTTGGTCTTCTCAGTTGGTTA 1052 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 TATACTCAGGTGGCTGGGCGTGCTGCTTTTGGCACGAATATTTGGAAGCTTCACTTGTTT 1112 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 TGTCCCAAACCATCCACATTCCCTCTCTCTCATCTTCTTACCGCAGAGGGGACGAAGGGC 1172 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 AGGAAAGGAGGACGGCTTAATCGAACCGCCTATTCCTTCCGATCCATCCAGAAGACGAGA 1232 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 ACTGGGGATGGAGGATGCAAACAAAAATGCAAAATGTGTGAAGCTAACATCAAATCCATT 1292 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 CGAAAAGCTGCCACTAACGCCACCAAATCCATCGCATGCCTTACTGTAAGAACTGTGAGC 1352 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 GGAAAAAAAGATATTTAGCAGTACAGTTTAAAATTCATTATCAAAACTGGATAAAATGCC 1412 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 TTCCTATTTGGATGAATAGGTTATAATGCATGTTACTAGTTATTTCGTCAAAAGAGAAAC 1472 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 AAACAAACCCGAACGAAAGAGAATTTCAAAAGAAAAACAACAACGCCAAGAAGAAAGAAA 1532 consensus_6307#1 ------------------------------------------------------------ consensus_6307#0 ACATTACTAAACAAAACATAAA 1554 consensus_6307#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||