These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 805 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGGGATGAATTTCGATCGAGGAAAATAAGCTTAAGAATGGCAATGAATGTGAGAAACACATGAACAAAAGCAGAAACTATATGATATTGTAAGCGCCACATACCCAGATGGCGATGATGCGCACGAACGAAACAACACGCAAATGGGTTTAGGGTCGAAATTGCGTTCGATGAAGCGGTGAACACTTGAACACATCCAACACAACAACAACAAAATAACACGCATCTACACTCTCTCTCTCTCACACACACGCACACTCCGTTTGTAATTCGTTAGAAGAAGGTAATCGAACTCGTTTCGCACTTTCTGTAACCTTTTTGTTTCAAGTCAGCAGCATATTGGCACCAACGCTCAATCATCATCCGTTGTACAATCGCAACCGAACAACCATTCAATTACTGCTACAAAGCACGCGGCGGCATGTGGCGTAAGTCAAGCAGAGACAAAATTCACTAATCTAAGCGCCTAAGTATATGTTTTAGAAATGGTTAAGTAATTACAGTTGTGTCCTTAGTTTTTACGTACGAGCTACAACAAACAAATAATCAAACACACACACATAAACCTACCCCTTTCCATTACTCTCACACAACTTTCGCAGCAAGAAACACCTACAAAATCGCACACCCGCCAACGCTACTCTGGCCTGCATAATGGAGGCATAAAAAAGAAAAAACAAAGCGGGCACACGCAATACACTTGATTACACCACAGCATTACACCACAATATACACCACCAATATAAACAAAACAAAACCACTATACACACACACA] [+] EMBL BM594984 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGGGATGAATTTCGATCGAGGAAAATAAGCTTAAGAATGGCAATGAATGTGAGAAACACATGAACAAAAGCAGAAACTATATGATATTGTAAGCGCCACATACCCAGATGGCGATGATGCGCACGAACGAAACAACACGCAAATGGGTTTAGGGTCGAAATTGCGTTCGATGAAGCGGTGAACACTTGAACACATCCAACACAACAACAACAAAATAACACGCATCTACACTCTCTCTCTCTCACACACACGCACACTCCGTTTGTAATTCGTTAGAAGAAGGTAATCGAACTCGTTTCGCACTTTCTGTAACCTTTTTGTTTCAAGTCAGCAGCATATTGGCACCAACGCTCAATCATCATCCGTTGTACAATCGCAACCGAACAACCATTCAATTACTGCTACAAAGCACGCGGCGGCATGTGGCGTAAGTCAAGCAGAGACAAAATTCACTAATCTAAGCGCCTAAGTATATGTTTTAGAAATGGTTAAGTAATTACAGTTGTGTCCTTAGTTTTTACGTACGAGCTACAACAAACAAATAATCAAACACACACACATAAACCTACCCCTTTCCATTACTCTCACACAACTTTCGCAGCAAGAAACACCTACAAAATCGCACACCCGCCAACGCTACTCTGGCCTGCATAATGGAGG ] [+] EMBL BM657462 [ ccgCAACAACAAAATAACACGCATCTACACTCTCTCTCTCTCACACACACGCACACTCCGTTTGTAATTCGTTAGAAGAAGGTAATCGAACTCGTTTCGCACTTTCTGTAACCTTTTTGTTTCAAGTCAGCAGCATATTGGCACCAACGCTCAATCATCATCCGTTGTACAATCGCAACCGAACAACCATTCAATTACTGCTACAAAGCACGCGGCGGCATGTGGCGTAAGTCAAGCAGAGACAAAATTCACTAATCTAAGCGCCTAAGTATATGTTTTAGAAATGGTTAAGTAATTACAGTTGTGTCCTTAGTTTTTACGTACGAGCTACAACAAACAAATAATCAAACACACACACATAAACCTACCCCTTTCCATTACTCTCACACAACTTTCGCAGCAAGAAACACCTACAAAATCGCACACCCGCCAACGCTACTCTGGCCTGCATAATGGAGGCATAAAAAAGAAAAAACAAAGCGGGCACACGCAATACACTTGATTACACCACAGCATTACACCACAATATACACCACCAATATAAACAAAACAAAACCACTATACACACACACA] consensusID : consensus_6314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CCGCCCACGCGTCCGATTCTTTACTATCTTCTGCCATCGTTATCGCCATACATTTGCAAATGGCTTTCATTCTCCGTCGATCGAGCTTTCTTCTGGCCGACATTGCAAGTAAATCCTCTCCGAAGGTACTTGCAAGTGGATGCCAGAAGCGCCACCTGAACGTACAAGAGCACGTATCTTACTCCTTCCTAAATGAAGCGGGAATTCCAACGCCCAAGTTTGGAGTAGCAACGTCCGGGGCAGAAGCTAAAAAAATTGCTACGGACCTTAATACAAAGAACCTGGTCTTGAAAGCCCAAGTGCTAGCTGGCGGGCGCGGAAAAGGAAGCTTTAAGAATGGGTTGAAGGGTGGTGTCCGGGTGGTGTTTTCACCCCAGGAGGCAGAAGATATTTCGGGCAAAATGATCAACCAGCTTCTCGTCACTAAACAAACGGGAGCAGCGGGACGTATTTGCAATTCTGTCATGGTGGCGGAACGAAAGTTTCCTCGCCGAGAATTCTACTTTGCCGTTATGATGGAGCGTGCTTTCAATGGACCTGTTCTAATCGCATCGTCTCAAGGAGGTGTCAACATTGAAGAAGTGGCTGCTGAAAACCCAGATGCAATTGTATACGAACCTATTGACATTAACAAAGGTCTGCAGAAGGAGCAA] [+] EMBL BM627549 [CCGCCCACGCGTCCGATTCTTTACTATCTTCTGCCATCGTTATCGCCATACATTTGCAAATGGCTTTCATTCTCCGTCGATCGAGCTTTCTTCTGGCCGACATTGCAAGTAAATCCTCTCCGAAGGTACTTGCAAGTGGATGCCAGAAGCGCCACCTGAACGTACAAGAGCACGTATCTTACTCCTTCCTAAATGAAGCGGGAATTCCAACGCCCAAGTTTGGAGTAGCAACGTCCGGGGCAGAAGCTAAAAAAATTGCTACGGACCTTAATACAAAGAACCTGGTCTTGAAAGCCCAAGTGCTAGCTGGCGGGCGCGGAAAAGGAAGCTTTAAGAATGGGTTGAAGGGTGGTGTCCGGGTGGTGTTTTCACCCCAGGAGGCAGAAGATATTTCGGGCAAAATGATCAACCAGCTTCTCGTCACTAAACAAACGGGAGCAGCGGGACGTATTTGCAATTCTGTCATGGTGGCGGAACGAAAGTTTCCTCGCCGAGAATTCTACTTTGCCGTTATGATGGAGCGTGCTTTCAATGGACCTGTTCTAATCGCATCGTCTCAAGGAGGTGTCAACATTGAAGAAGTGGCTGCTGAAAACCCAGATGCAATTGTATACGAACCTATTGACATTAACAAAGGTCTGCAGAAGGAGCAA] consensusID : consensus_6314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [GGCAGAATCCGCACGANNGGTGATGTGTGACTACCCCCTAAATTTAAGCATATTAATAAGGGGAGGAAGAGAAACCAACCGGGATTCCCTGAGTAGCTGCGAGCGAAACGGGAAGAGCTCAGCACGTAGGGACGGCATGGAAACGTGCCTGTCCGATTCCGTGTACTGGACCGGTCCGTTATCTATCACGCACTGTGCACTTCAAGTTCAACTTGAAGGTGGCCCATTCTCCCATAGAGGGTGATAGGCCCGTGGAAAGGCATGAGGTGAGGTGATAGACGGTCGGCTCCATGGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATACCACCATGAGTCCGATAGCAGTAGCAGCAACATAAGGAGAGGGAACAAGCGCGAACAGGCAAAGTGCATACGCATACAAATTATATACACCGTAGCTTTAAGGACTTGTAACGGTAGCATCTAAGGGCTGTAAAGCTGTAAAGAGAGCGTCAGAAGAAGAAGGAAGAAGAAGAAGAAGAAGGACCCGAACAATGCGCACTCATCCCAAGACACCAGACCCACAATTTTGCGAACCGAGCACACACNACGCCGCATACACATACGTAGATAGCACGT] [+] EMBL BX468275 [GGCAGAATCCGCACGANNGGTGATGTGTGACTACCCCCTAAATTTAAGCATATTAATAAGGGGAGGAAGAGAAACCAACCGGGATTCCCTGAGTAGCTGCGAGCGAAACGGGAAGAGCTCAGCACGTAGGGACGGCATGGAAACGTGCCTGTCCGATTCCGTGTACTGGACCGGTCCGTTATCTATCACGCACTGTGCACTTCAAGTTCAACTTGAAGGTGGCCCATTCTCCCATAGAGGGTGATAGGCCCGTGGAAAGGCATGAGGTGAGGTGATAGACGGTCGGCTCCATGGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATACCACCATGAGTCCGATAGCAGTAGCAGCAACATAAGGAGAGGGAACAAGCGCGAACAGGCAAAGTGCATACGCATACAAATTATATACACCGTAGCTTTAAGGACTTGTAACGGTAGCATCTAAGGGCTGTAAAGCTGTAAAGAGAGCGTCAGAAGAAGAAGGAAGAAGAAGAAGAAGAAGGACCCGAACAATGCGCACTCATCCCAAGACACCAGACCCACAATTTTGCGAACCGAGCACACACNACGCCGCATACACATACGTAGATAGCACGT] consensusID : consensus_6314#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [TAGAGAAAGAAGTTGCAAAGTGCACGCTGTGCTGTCCTGCGTTGCAACTAGACTGCATCCTTTTCGGATGATGAAACGTAAGAAGGAGGAGAGGGAGGTTGAGGCGCAGTAGTTATGAGAAGAGAAATGGGTGAACAGTAATACTACTCTACTACTACTACTGCTACTATTATTACTTAAGGTAAAGGAAAGGAAGCAAAAAAGAATGATGTCGAAAAGTATCCGTCTGCTTGAGAAAGGGGAAACGAAACAGAGAGAGAGCGAGAGAGAGAAAGGAAAGCAAAAGAAAGGATTGGAAATGATGTGCACATTATATGAAAGTATTTGAAAGTCAGAAAGCGTAAGAACTCTACCCCCTCCCGTGTCTTTACACGTTGCTACCAACACGACGACCGGTACGTTATGATTCCCAATATCACTGTTTTACTGGTTTCATATGTTACGTCCTGGTTCCGATATGTATTGTGCATTAGTAACCCCTTCCTCCCTCC] [+] EMBL BX611791 [TAGAGAAAGAAGTTGCAAAGTGCACGCTGTGCTGTCCTGCGTTGCAACTAGACTGCATCCTTTTCGGATGATGAAACGTAAGAAGGAGGAGAGGGAGGTTGAGGCGCAGTAGTTATGAGAAGAGAAATGGGTGAACAGTAATACTACTCTACTACTACTACTGCTACTATTATTACTTAAGGTAAAGGAAAGGAAGCAAAAAAGAATGATGTCGAAAAGTATCCGTCTGCTTGAGAAAGGGGAAACGAAACAGAGAGAGAGCGAGAGAGAGAAAGGAAAGCAAAAGAAAGGATTGGAAATGATGTGCACATTATATGAAAGTATTTGAAAGTCAGAAAGCGTAAGAACTCTACCCCCTCCCGTGTCTTTACACGTTGCTACCAACACGACGACCGGTACGTTATGATTCCCAATATCACTGTTTTACTGGTTTCATATGTTACGTCCTGGTTCCGATATGTATTGTGCATTAGTAACCCCTTCCTCCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6314#2 ------------------------------GGCAGAATCCGCACGANNGGTGATGTGTGA 30 consensus_6314#3 ------------------------------------------------------------ consensus_6314#0 CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGGGATGAATTTCGATCGAGGAAAATAAG 60 consensus_6314#1 --------------------------------------CCGCCCACGCGTCCGATTCTTT 22 consensus_6314#2 CTACCCCCTAAATTTAAGCATATTAATAAGGGGAGGAAGAGAAACCAACCGGGATTCCCT 90 consensus_6314#3 ------------------------------------------------------------ consensus_6314#0 CTTAAGAATGGCAATGAATGTGAGAAACACATGAACAAAAGCAGAAACTATATGATATTG 120 consensus_6314#1 ACTATCTTCTGCCATCGTTATCGCCATACATTTGCAAATGGCTTTCATTCTCCGTCGATC 82 consensus_6314#2 GAGTAGCTGCGAGCGAAACGGGAAGAGCTCAGCACGTAGGGACGGCA-TGGAAACGTGCC 149 consensus_6314#3 ------------------------------------TAGAGAAAGAAGTTGCAAAGTGCA 24 consensus_6314#0 TAAGCGCCACATACCCAGATGGCGATGATGCGCACGAACGAAACAACACGCAAATGGGTT 180 consensus_6314#1 GAGCTTTCTTCTGGCCGACATTGCAAGTAAATCCTCTCCGAAGGTACTTGCAAGTGGATG 142 * * * consensus_6314#2 T---GTC-CGATTCCGTGTACTGGACCGGTCCGTTATCTATCACGCACTGTGCACTTCAA 205 consensus_6314#3 C---GCTGTGCTGTCCTGCGTTGCAACTAGACTGCATCCTTTTCGGATGATGAAACGTAA 81 consensus_6314#0 TAGGGTCGAAATTGCGTTCGATGAAGCGGTGAACACTTGAACACATCCAACACAACAACA 240 consensus_6314#1 C----CAGAAGCGCCACCTGAACGTACAAGAGCACGTATCTTACTCCTTCCTAAATGAAG 198 * * * * * consensus_6314#2 GTTCAACTTGAAGGTGGCCCATTCTCCCATAGAGGGTGATAGGCCCG------TGGAAAG 259 consensus_6314#3 GAAGGAGGAGAGGGAGGTTGAGGCGC-----AGTAGTTATGAG--AA------GAGAAAT 128 consensus_6314#0 ACAAAATAACACGCATCTACACTCTCTCTCTCTCACACACACGCACACTCCGTTTGTAAT 300 consensus_6314#1 CGGGAATTCCA---ACGCCCAAGTTTGGAGTAGCAACGTCCGGGGCAGAAGCTAAAAAAA 255 * * * * ** consensus_6314#2 GCATGAGGTGAGG-TGAT---AGACGGTCGGCTCCATGG--AGTCGTGTTGCTTGATAGT 313 consensus_6314#3 GGGTGAACAGTAA-TACT---ACTCTACTACTACTACTGCTACTATTATTACTTAA-GGT 183 consensus_6314#0 TCGTTAGAAGAAGGTAATCGAACTCGTTTCGCACTTTCTGTAACCTTTTTGTTTCA-AGT 359 consensus_6314#1 TTGCTA-CGGACCTTAATACAAAGAACCTGGTCTTGAAAGCCCAAGTGCTAGCTGGCGGG 314 * * * * * * * * * consensus_6314#2 GCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATACCACCATGAGTCCGATAGC 373 consensus_6314#3 AAAGGAAAGGAAGCAAAAAAGAATGATGTCGAA---AAGTATCCGTCTGCTTGAGAAAGG 240 consensus_6314#0 -CAGCAGCATATTGGCACCAACGCTCAATCATCATCCGTTGTACAATCGCAACCGAACAA 418 consensus_6314#1 CGCGGAAAAGGAAGCTTTAAGAATGG-GTTGAAGGGTGGTGTCCGGGTGGTGTTTTCACC 373 * * * * * consensus_6314#2 AGTAGCAGCAACATAAGGAGAGGGAACAAGCGCGAACAGGCAAAGTGCATACGCATACAA 433 consensus_6314#3 GGAAAC-GAAACAGAGAGAGAGCGAGAGAGAGAAAGGAAAGCAAAAGAA-AGGATTGGAA 298 consensus_6314#0 CCATTCAATTACTGCTACAAAGCACGCGGCGGCATGTGGCGTAAGTCAAGCAGAGACAAA 478 consensus_6314#1 CCAGGAGGCAGAAGATATTTCGGGCAAAATGATCAACCAGCTTCTCGTCACTAAACAAAC 433 * * consensus_6314#2 ATTATATACACCGTAGCTTTAAGGACTTGTAA-CGGTAGCATCTAAGGGCTGTAAAGCTG 492 consensus_6314#3 ATGATGTGCACATTATATGAAAGTATTTGAAAGTCAGAAAGCGTAAGAACTCTACCCCCT 358 consensus_6314#0 ATTCACTAATCTAAGCGCCTAAGTATATGTTTTAGAAATGGTTAAGTAATTACAGTTGTG 538 consensus_6314#1 GGGAGCAGCGGGACGTATTTGCAATTCTGTCATGGTGGCGGAACGAAAGTTTCCTCGCCG 493 ** * consensus_6314#2 TAAAGAGAGCGTCAGAAGAAGAAGGAAGAAGAAGAAGAAGAAGGACCCGAACAATGCGCA 552 consensus_6314#3 CCC-----GTGTCTTTACACGTTGCTACCAACACGACGACCGGTACGTTA-TGATTCCCA 412 consensus_6314#0 TCCTTAGTTTTTACGTACGAGCTACAACAAACAAATAATCAAACACACAC---ACATAAA 595 consensus_6314#1 AGAATTCTACTTTGCCGTTATGATGGAGCGTGCTTTCAATGGACCTGTTCTAATCGCATC 553 * * consensus_6314#2 CTCATCCCAAGACACCAGACCCACAA---TTTTGCGAACCGAG-CACACACNACGCCGCA 608 consensus_6314#3 ATATCACTGTTTTACTGGTTTCATA----TGTTACGTCCTGGT-TCCGATATGTATTGTG 467 consensus_6314#0 CCTACCCCTTTCCATTACTCTCACACAACTTTCGCAGCAAGAAACACCTACAAAATCGCA 655 consensus_6314#1 GTCTCAAGGAGGTGTCAACATTGAAGA--AGTGGCTGCTGAAAACCCAGATGCAATTGTA 611 * * * * * consensus_6314#2 TACACATACGTAGATAGCACGT-------------------------------------- 630 consensus_6314#3 CATTAGTAACCCCTTCCTCCCTCC------------------------------------ 491 consensus_6314#0 CACCCGCCAACGCTACTCTGGCCTGCATAATGGAGGCATAAAAAAGAAAAAACAAAGCGG 715 consensus_6314#1 TACGAACCTATTGACATTAACAAAGGTCTGCAGAAGGAGCAA------------------ 653 * consensus_6314#2 ------------------------------------------------------------ consensus_6314#3 ------------------------------------------------------------ consensus_6314#0 GCACACGCAATACACTTGATTACACCACAGCATTACACCACAATATACACCACCAATATA 775 consensus_6314#1 ------------------------------------------------------------ consensus_6314#2 ------------------------------ consensus_6314#3 ------------------------------ consensus_6314#0 AACAAAACAAAACCACTATACACACACACA 805 consensus_6314#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||