These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 533 fasta sequence [TTTTTTTT---TTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTTCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGATTGTCTTCGAAGACTTCTACAGGTAGATTATCTCGAAGGCTCAGCTCCTCGAATAGTTTGCATGTCCACAGTACCTCACAGATGCAGTCGGATAGAGCTGAACATTCTGCTTCAGTTGATGACAATGCTACTGTCCGCTGCTTTTTAGTGCTCCAAGCAGTAGTTGCCCCATAG] [+] EMBL AGA281635 [TTTTTTTT TTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTTCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGATTGTCTTCGAAGACTTCTACAGGTAGATTATCTCGAAGGCTCAGCTCCTCGAATAGTTTGCATGTCCACAGTACCTCACAGATGCAGTCGGATAGAGCTGAACATTCTGCTTCAGTTGATGACAATGCTACTGTCCGCTGCTTTTTAGTGCTCCAAGCAGTAGTTGCCCCATAG] [+] EMBL AGA280994 [TTTTTTTTCGGTTCAGTTAACAAAAGCAAAAAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTTCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGATTGTCTTCCAAGACTTCTACAGGT ] [+] EMBL AGA280382 [ TTTTTTT TCCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTTCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGATTGTCTTCGAAGACTTCTACAGGT ] [-] EMBL AGA282624 [ GTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTTCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGATTGTCTTCGAAGACTTCTACAGGTAGATTATCTCGAAGGCTCAGCTCCTCGAATAGTTTGCATGTCCACAGTACCTCACAGATGCAGTCGGATAGAGCTGAACATTCTGCTTCAGTTGATGACAATGCTACTGTCCGCTGCTTTTTAGTGCTCCAATCAc ] consensusID : consensus_6334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [TTTTTTTTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACAAATCTCGAATCTGGCGATGTACTTGTTCCTTAAGATGTCCATCTCGCTCCATCCTCCTCTCCAAACAATTGAACCTACGACGCGCCATGTCGATGCTAGGAGGTAGCTCGATGTCATCTTTCCTCCACAGTAATCCCGATTCGAATCGCTTCCCGATTCGTGCCGTGGTAGTGTCCAGAATCTGCTTCGCACGCCGCTCATCTGGATCCTGTTCGACGCCGTGTGCAGCACCAATCAACTGCATGTCGAAATATTCCCGAATCGTCTCGTGAATGTTACCTTGGTCGTTGCACTCGCAAATATTCAA] [+] EMBL AGA280510 [TTTTTTTTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACAAATCTCGAATCTGGCGATGTACTTGTTCCTTAAGATGTCCATCTCGCTCCATCCTCCTCTCCAAACAATTGAACCTACGACGCGCCATGTCGATGCTAGGAGGTAGCTCGATGTCATCTTTCCTCCACAGTAATCCCGATTCGAATCGCTTCCCGATTCGTGCCGTGGTAGTGTCCAGAATCTGCTTCGCACGCCGCTCATCTGGATCCTGTTCGACGCCGTGTGCAGCACCAATCAACTGCATGTCGAAATATTCCCGAATCGTCTCGTGAATGTTACCTTGGTCGTTGCACTCGCAAATATTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6334#0 TTTTTTTTTTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGT 60 consensus_6334#1 --TTTTTTTTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGT 58 ********************************************************** consensus_6334#0 GTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGT 120 consensus_6334#1 GTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGT 118 ************************************************************ consensus_6334#0 CCGTTAACACCCCTCCTCAAACATATAACG-GTTCAACTCCCAAGACGGCTCGATGTTTG 179 consensus_6334#1 CCGTTAACACAAATCTCGAATCTGGCGATGTACTTGTTCCTTAAGATG--TCCATCTCGC 176 ********** ** ** * * * * * **** * ** ** * consensus_6334#0 ACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGG 239 consensus_6334#1 TCCATCCTCCTCTCCAAACA-------ATTGAACCTACGACGCGCCATGTCGATGCTAGG 229 * * * ** * ** ** * * * * * * ** consensus_6334#0 ATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATT 299 consensus_6334#1 AGGTAGCTCGATGTCATCTTTCCTCCACAGTAATCCCGATT--CGAATCGCTTCCCGATT 287 * ***** * *** ** ** ** * * * * ** ** ** **** consensus_6334#0 TCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACT-- 357 consensus_6334#1 ----CGTGCCGTGGTAGTGTCCA----------GAATCTGCTTCGCACGCCGCTCATCTG 333 **** * * ** * **** **** ** * consensus_6334#0 GATTGTCTTCGAAGACTTCTACAG-GTAGATTATCTCGAAGGCTCAGC-TCCTCGAATAG 415 consensus_6334#1 GATCCTGTTCGACGCCGTGTGCAGCACCAATCAACTGCATGTCGAAATATTCCCGAATCG 393 *** * ***** * * * * *** ** * ** * * * * * * ***** * consensus_6334#0 TTTGCATGTCCACAGTACCTCA-CAGATGCAGTCGGATAGAGCTGAACATTCTGCTTCAG 474 consensus_6334#1 TCT---CGTGAATGTTACCTTGGTCGTTGCACTCGCAAATATTCAA-------------- 436 * * ** * ***** * **** *** * * * * consensus_6334#0 TTGATGACAATGCTACTGTCCGCTGCTTTTTAGTGCTCCAAGCAGTAGTTGCCCCATAG 533 consensus_6334#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||