These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 897 fasta sequence [GCAGAATCGCGCACGAGNGGTTCGCCGATGTTTGAATCGATCGACTGGAACCTGGAAAGCGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAGAATCCGAACGATTTCCCCGACATCCTGGCGCACCTCAGCACCATCCATTCCGGCAAGTATCAGCTGCAGGATGTAGCCCACTCCGTCGTTGACAAGGGCAACGGGAAGAAAGCGCGCCACGAAGCAAAGCCATCAAAGGGTGCGATGAGAAAGGGTGGCAAAGCAGCACCGGGTGAGGTTAAGTCATCGCTCCCGGAACAAACTGACAGAGAAGCTGCTGCTACGGTCGCAAAGAAATCCAAAATGGCGGACTGTCGCGAAAAGGTTACTACGCCACAAGTGGAAGAGCGCAACGGGAACGACACGGAAAATGTAAAGCCGGCCGAAAATCGCAAAAATCCGCAGCAACGCAACGATTTCGCAGTGCCCAAAGCTCCAATGCCAAAGAAGGCGGTTGGCACCAATTCGGCCAATGTGCAGAATGCTGCTGCACGCCCGTTGCGCAAAGTGCCGCCACCAGGGGACGCCGAAAAAGTCCCCAGCAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAAAGCACTCACGGCCTGCTTTGGTCCAAATACAGGCAAGGTCCAAGGCAGGGCAATCGCTCCTTACAAGCAAANCCTTTCNTGGCAGAGNCGGTCCCGGTGGGAAACCAGGTAAAACGGGGATTNGTCGGTTCCCCCAAAGCAGGCGAANTCCAAGCCGGAAAGNGTCCGCAGAAAACAGGGGANCCCAGGGAATTAATTGGGGGGGCTGCCANAGAGCCAGGGCCACATGTGTTGGAGAGCAACAGNANGAGANACCTCTAAAGAGAAAGGCA] [+] EMBL BX468248 [GCAGAATCGCGCACGAGNGGTTCGCCGATGTTTGAATCGATCGACTGGAACCTGGAAAGCGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAGAATCCGAACGATTTCCCCGACATCCTGGCGCACCTCAGCACCATCCATTCCGGCAAGTATCAGCTGCAGGATGTAGCCCACTCCGTCGTTGACAAGGGCAACGGGAAGAAAGCGCGCCACGAAGCAAAGCCATCAAAGGGTGCGATGAGAAAGGGTGGCAAAGCAGCACCGGGTGAGGTTAAGTCATCGCTCCCGGAACAAACTGACAGAGAAGCTGCTGCTACGGTCGCAAAGAAATCCAAAATGGCGGACTGTCGCGAAAAGGTTACTACGCCACAAGTGGAAGAGCGCAACGGGAACGACACGGAAAATGTAAAGCCGGCCGAAAATCGCAAAAATCCGCAGCAACGCAACGATTTCGCAGTGCCCAAAGCTCCAATGCCAAAGAAGGCGGTTGGCACCAATTCGGCCAATGTGCAGAATGCTGCTGCACGCCCGTTGCGCAAAGTGCCGCCACCAGGGGACGCCGAAAAAGTCCCCAGCAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAAAGCACTCACGGCCTGCTTTGGTCCAAATACAGGCAAGGTCCAAGGCAGGGCAATCGCTCCTTACAAGCAAANCCTTTCNTGGCAGAGNCGGTCCCGGTGGGAAACCAGGTAAAACGGGGATTNGTCGGTTCCCCCAAAGCAGGCGAANTCCAAGCCGGAAAGNGTCCGCAGAAAACAGGGGANCCCAGGGAATTAATTGGGGGGGCTGCCANAGAGCCAGGGCCACATGTGTTGGAGAGCAACAGNANGAGANACCTCTAAAGAGAAAGGCA] consensusID : consensus_6341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 891 fasta sequence [AAAAAGTCCCCACAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAAAGCACTCACGCCTGCTTTGGTCCAAATACAGCAGTCCAGCAGCCATCGCTCTTCAAGCAACCCTTCTGCCAGAGCGTCCGGTGGAAACAGTAAGGGTGGTGGTTCCAACAGCAATCAACCGAACTCAAAAAAGGAACCAGAATATGGCGCTCAAGAGCAGCCACGTGTGGAGCAAGAGAAACCTCAACAAGCCACAGCGCAACAGAAACAGCAACCGCAACAGCAACAATCAAACAGAAACAACAAACCGACAGTGTCGAACACTGCCAAGTCGTCTACCCGTGAGCCGGCGGTGAAGGAGAGCGACCCGGAACCGATGGAGCTGGACGCGGAGGACGACTGCAACATCGGCGAGATGATGGACACTTCGGCGAGCAACAATTCCCTGGACTTTGCGATGCAAAGTTCGAGCGGTGAGTTTGATCTGAACTTTTCCGGCGACCTTCCCGACATGAATCTGGGTGATGATGCTGCTGCCGATGAAGCGGACGATCTGGACTTATTGTGTGCCGGACCGGCTAAACAGACGCGCAGCAAATCGCAGAAGAGGAAAAAATCGGTCGATAGTAGTAATGACGTAGCGGACAGCTTTGACTTTGCGTTCGACGGCAGCAACTCCAGCGAATGTTTGGACGGTGGGGACGATTTGTTTAGTTGAGCTACTTTTTTT-AATGTTGCTAATTGAATTGAATTCTATTTATTTGCCTATCCCGCCCAACCAAACGTTGGGGGAAAGAGCGTAAAATCATTTCTTTCCATTGTTCGGTTTCGGTTTCACGACCTCGCTTTGAAGTTTAAATATACGCAACAGTATATTACAGATTAAAAAAAA] [+] EMBL AGA282091 [AAAAAGTCCCCACAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAAAGCACTCACGCCTGCTTTGGTCCAAATACAGCAGTCCAGCAGCCATCGCTCTTCAAGCAACCCTTCTGCCAGAGCGTCCGGTGGAAACAGTAAGGGTGGTGGTTCCAACAGCAATCAACCGAACTCAAAAAAGGAACCAGAATATGGCGCTCAAGAGCAGCCACGTGTGGAGCAAGAGAAACCTCAACAAGCCACAGCGCAACAGAAACAGCAACCGCAACAGCAACAATCAAACAGAAACAACAAACCGACAGTGTCGAACACTGCCAAGTCGTCTACCCGTGAGCCGGCGGTGAAGGAGAGCGACCCGGAACCGATGGAGCTGGACGCGGAGGACGACTGCAACATCGGCGAGATGATGGACACTTCGGCGAGCAACAATTCCCTGGA ] [-] EMBL CNS093EU [ GAAACCTCAACAAACCACAGCGCAACAGAAACAGAAACCGCAAAAACAAAAATCAAACAGAAACAACAAACCGACAGTATCGAACACTGCCAAGTCGTCTACCCGTGAGCCGGCGGTGAAGGAGAGCGACCCGGAACCGATGGAGCTGGACGCGGAGGACGACTGCAACATCGGCGAGATGATGGACACTTCGGCGAGCAACAATTCCCTGGACTTTGCGATGCAAAGTTCGAGCGGTGAGTTTGATCTGAACTTTTCCGGCGACCTTCCCGACATGAATCTGGGTGATGATGCTGCTGCCGATGAAGCGGACGATCTGGACTTATTGTGTGCCGGACCGGCTAAACAGACGCGCAGCAAATCGCAGAAGAGGAAAAAATCGGTCGATAGTAGTAATGACGTAGCGGACAGCTTTGACTTTGCGTTCGACGGCAGCAACTCCAGCGAATGTTTGGACGGTGGGGACGATTTGTTTAGTTGAGCTACTTTTTTT AATGTTGCTAATTGAATTGAATTCTATTTATTTGCCTATCCCGCCCAACCAAACGTTGGGGGAAAGAGCGTAAAATCATTTCTTTCCATTGTTCGGTTTCGGTTTCACGACCTCGCTTTGAAGTTTAAATATACGCAACAGTATATTACAGATT ] [-] EMBL AGA280390 [ GGAGGACGACTGCAACATCGGCGAGATGATGGACACTTCGGCGAGCAACAATTCCCTGGACTTTGTGATGCAAAGTTCGAGCGGTGAGTTTGATCTGAACTTTTCCGGCGACCTTCCCGACATGAATCTGGGTGATGATGCTGCTGCCGATGAAGCGGACGATCTGGACTTTTTGTGTGCCGGCCCGGCTAAACAGACGCGCAGCAAATCGCAGAAGAGGAAAAAATCGGTCGATAGTAGTAATGACGTAGCGGACAGCTTTGACTTTGCGTTCGACGGCAGCAACTCCAGCGAATGTTTGGACGGTGGGGACGATTTGTTTAGTTGAGCTACTTTTTTTAAATGCTGCTAATTGAATTGAATTCTATTTATTTGCCTATCCCGCCCAACCAAACGTTGGGGGATAGAGCGTAAAATCATTTCTTTCCATTGTTCGGTTTCGGTTTCACGACCTCGCTTTGAAGTTAAAATATACGCAACAGTATATTACAGATTAAAAAAAA] consensusID : consensus_6341#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 877 fasta sequence [GGAAAAGATTCTCGCCGACTTCTTGTCGAACAATTCATCGTCCTCCTCGCACGATGCGTCGTTCAACGACCTCGAACAGTTGGCCGAGCTGCACAAACAGATAGAGCTGAAGAAAGTGCACCGGGACGATTTGCGTCGTTTGAATTTCGGACTGTTCTCGCTCAAGCAGGGACTGGCGAGCTTTGGCAGTGGAGCGTTCGAGGAACAGCTTTCCATCGATCACCACACCATCGTCCGGCAGGTGGTGGAGAAGTACCGGGAGGCATCGTACGGTTTGCAGCGTTATTGCGGCGAGCAGACACTGCTCGGCCACTCGCGGCAGGCTCTGCTCGATCAGGGCGAGTTGCAGAAGCTGCAGAGTGTGCTGCGGCTGCAGGACCAGCTGCGCGTGAAGCTCGCCAGCACGCCGATCGTGAAGCAGTGGGACCGGGAGAAGGCCACCCTGTGCGCGGAACAGAAGGAGCTGGCCAAGCTGGAGCAGGTCAGCAATGAGATTACGCACAAGCGTAAAGACATGCTCGACCGAAAGCGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAGAATCCGAACGATTTCCCCGACATCCTGGCGCACCTCAGCACCATCCATTCCGGCAAGTATCAGCTGCAGGATGTAGCCCACTCCGTCGTTGACAAGGGCTACGGGAAGAAAGCGCGCCACGAAGCAAAGCCACCAAAGGGTGCGATGAGAAAGGGTGGCAAAGCAGCACCGGGTGAGGTTAAGTCATCGCTCCCGGAACAAACTTACAGAGAAGCTGCTGCTACGGTCGCAAAGAAATCCAAAATGGCGGACTGTCGCGAAAAGGTTACTACGCCACAAGTGGAAGAGCGCAACGGGAACGACACGGAAAA] [+] EMBL CNS093ET [GGAAAAGATTCTCGCCGACTTCTTGTCGAACAATTCATCGTCCTCCTCGCACGATGCGTCGTTCAACGACCTCGAACAGTTGGCCGAGCTGCACAAACAGATAGAGCTGAAGAAAGTGCACCGGGACGATTTGCGTCGTTTGAATTTCGGACTGTTCTCGCTCAAGCAGGGACTGGCGAGCTTTGGCAGTGGAGCGTTCGAGGAACAGCTTTCCATCGATCACCACACCATCGTCCGGCAGGTGGTGGAGAAGTACCGGGAGGCATCGTACGGTTTGCAGCGTTATTGCGGCGAGCAGACACTGCTCGGCCACTCGCGGCAGGCTCTGCTCGATCAGGGCGAGTTGCAGAAGCTGCAGAGTGTGCTGCGGCTGCAGGACCAGCTGCGCGTGAAGCTCGCCAGCACGCCGATCGTGAAGCAGTGGGACCGGGAGAAGGCCACCCTGTGCGCGGAACAGAAGGAGCTGGCCAAGCTGGAGCAGGTCAGCAATGAGATTACGCACAAGCGTAAAGACATGCTCGACCGAAAGCGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAGAATCCGAACGATTTCCCCGACATCCTGGCGCACCTCAGCACCATCCATTCCGGCAAGTATCAGCTGCAGGATGTAGCCCACTCCGTCGTTGACAAGGGCTACGGGAAGAAAGCGCGCCACGAAGCAAAGCCACCAAAGGGTGCGATGAGAAAGGGTGGCAAAGCAGCACCGGGTGAGGTTAAGTCATCGCTCCCGGAACAAACTTACAGAGAAGCTGCTGCTACGGTCGCAAAGAAATCCAAAATGGCGGACTGTCGCGAAAAGGTTACTACGCCACAAGTGGAAGAGCGCAACGGGAACGACACGGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6341#0 -GCAGAATCGCGCACGAGNGGTTCGCCGATGTTTGAATCGATCGACTGGAACCTGGAAAG 59 consensus_6341#2 GGAAAAGATTCTCGCCGACTTCTTGTCGAACAATTCATCGTCCTCCTCGCACGATGCGTC 60 consensus_6341#1 AAAAAGTCCCCACAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAA- 59 * * * * * ** * * consensus_6341#0 CGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAGAATCCGAACGATTTCCCCGACAT 119 consensus_6341#2 GTTCAACGACCTCGAACAGTTGG--CCGAGCTGCACAAA-CAGATAGAGCTGAAGAAAGT 117 consensus_6341#1 ----AGCACTCACGCCTGCTTTGGTCCAAA-TACAGCAGTCCAGCAG---CCATCGCTCT 111 * * * ** * * * * ** * * * * consensus_6341#0 CCTGGCGCACC-TCAGCACCATCC--ATTCCGGCAAGTATCAGCT---GCAGGATGTAGC 173 consensus_6341#2 GCACCGGGACGATTTGCGTCGTTTGAATTTCGGACTGTTCTCGCTCAAGCAGGGACTGGC 177 consensus_6341#1 TCAAGCAACCCTTCTGCCAGAGCG----TCCGGTG-GAAACAGTA-----AGGGTGGTGG 161 * * * ** * *** * * *** * consensus_6341#0 CCACTCCGTCGTTGACAAGGGCAACGGGAAGAAAGCGCGCCACGAAGCA--AAGCCATCA 231 consensus_6341#2 GAGCTTTGGCAGTG----GAGCGTTCGAGGAACAGCTTTCCATCGATCACCACACCATCG 233 consensus_6341#1 TTCCAACAGCAATCAACCGAACTCAAAAAAGGAACCAGAATATGGCGCTCAAGAGCAGCC 221 * * * * * * * * * * ** * consensus_6341#0 AAGGGTGCGATGAGAAAGGGTGGCA-AAGCAGCACCGGGTGAGGTTAAGTCATCGCTCCC 290 consensus_6341#2 TCCGGCAGGTGGTGGAGAAGTACCG-GGA-GGCATCG--TACGGTTTG--CAGCGTTATT 287 consensus_6341#1 ACGTGTGGAGCAAGAGAAACCTCAACAAGCCACAGCGCAACAGAAACAGCAACCGCAACA 281 * * ** ** * * ** consensus_6341#0 GGAACAAACTGACAGAGAAGCTGCTGCTACGGTCGCAAAGAAATCCAAAATG-------G 343 consensus_6341#2 GCGGCGAGCAGACACTGCT-CGGCCACTCGCGGCAGGCTCTGCTCGATCAGG-------G 339 consensus_6341#1 GCAACAATCAAACAGAAACAACAAACCGACAGTGTCGAACACTGCCAAGTCGTCTACCCG 341 * * * * *** * * * * * * consensus_6341#0 CGGACTGTCGCGAAAAGGTTACTACGCCACAAGTGGAAGAGC-GCAACGGGAACGACACG 402 consensus_6341#2 CGAGTTGCAG-AAGCTGCAGAGTGTGCTGCGGCTGCAGGACCAGCTGCGCGTGAAGCTCG 398 consensus_6341#1 TGAGCCGGCG-GTGAAGGAGAGCGACCCGGAACCGATGGAGCTG-GACGCGGAGGACGAC 399 * * * * * * * ** * * ** * * consensus_6341#0 GAAAATGTAAAGCCGGCCGAAAATCGCAAAAATCCGCAGCAACGCAACG-ATTTCGCAGT 461 consensus_6341#2 CCAGC----ACGCCGATCGTGAAGCAGTGGGACCGGGAGAAGGCCACCC-TGTGCGCGGA 453 consensus_6341#1 TGCAACAT-CGGCGAGATGATGGACACTTCGGCGAGCAACAATTCCCTGGACTTTGCGAT 458 ** * * * * * * * ** consensus_6341#0 GCCCAAAGCTCCAATGCCAAAG--AAGGCGG---TTGGCACCAA--TTCGGCCAATGTG- 513 consensus_6341#2 ACAGAAGGAGCTGGCCAAGCTG--GAGCAGG---TCAGCAATGAGATTACGCACAAGCG- 507 consensus_6341#1 GC--AAAGTTCGAGCGGTGAGTTTGATCTGAACTTTTCCGGCGACCTTCCCGACATGAAT 516 * ** * * * * * * * ** * * consensus_6341#0 CAGAATGCTGCTGC-ACGCCCGTTGC--GCAAAGTGCCGCCACCAGGGG-ACGCCGAAAA 569 consensus_6341#2 TAAAGACATGCTCG-ACCGAAAGCGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAG 566 consensus_6341#1 CTGGGTGATGATGCTGCTGCCGATGA-AGCGGACGATCTGGACTTATTGTGTGCCGGACC 575 ** * * * ** * * consensus_6341#0 AGTCCCCAGCAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAAAGCA 629 consensus_6341#2 AATCCGAACGATTTCCCCGACATCCTGGC-GCACCTCAGCACCATCCATTCCGGCAAGTA 625 consensus_6341#1 GG--CTAAACAGACGCGCAGCA-AATCGC-AGAAGAGGAAAAAATCGGTCGATAGTAGTA 631 * * * * ** * ** * * * ** * consensus_6341#0 CTCACGGCCTGCTTTGGTCCA----AATACAGGCAAGGTCCAAGGCAGGGCAATCGCTCC 685 consensus_6341#2 TCAGCTGCAGGATGTAGCCCACTCCGTCGTTGACAAGGGCTACGGGAAGA-AAGCGCGCC 684 consensus_6341#1 ATGACGTAGCGGACAGCTTTGACTTTGCGTTCGACGGCAGCAACTCCAGCGAATGTTTGG 691 * * * * * ** consensus_6341#0 TTACAAGCAAANCCTTTCNTGGCAGAGNCG-GTCCCGGTGGGAAACCAG-GTAAAACGGG 743 consensus_6341#2 ACG-AAGCAAAGCCACCAAAGGGTGCGATGAGAAAGGGTGGCAAAGCAGCACCGGGTGAG 743 consensus_6341#1 ACGGTGGGGACGATTTGTTTAGTTGAGCTACTTTTTTTAATGTTGCTAA--TTGAATTGA 749 * * * * * * consensus_6341#0 GATTNGTCGGTTCCCCCAAAGCAGGCGAANTCCAAGCCGGAAAGNGTCCGCAGAAAACAG 803 consensus_6341#2 GTTAAGTCATCGCTCCCGGAACA----AACTTACAGAGAAGCTGCTGCTACGGTCGCAAA 799 consensus_6341#1 ATTCTATTTATTTGCCTATCCCG--CCCAACCAAACGTTGGGGGAAAGAGCGTAAAATCA 807 * * ** * * * * * consensus_6341#0 GGGANCCCAGGGAATTAATTGGGGGGGCTGCCANAGAGCCAGGGCCACATGTGTTGGAGA 863 consensus_6341#2 GAAATCCAAAATGGCGGACTG------TCGCGAAAAGGTTACTACGCCACAAGTGGAAGA 853 consensus_6341#1 TTTCTTTCCATTGTTCGGTTTCGG----TTTCACGACCTCGCTTTGAAGTTTAAATATAC 863 * * consensus_6341#0 GCAACAGNANGAGANACCTCTAAAGAGAAAGGCA 897 consensus_6341#2 GCG-CAACGGGAACGACACGGAAAA--------- 877 consensus_6341#1 GCAACAGTATATTACAGATTAAAAAAAA------ 891 ** ** * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||