These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 990 fasta sequence [GCAAGAATCGGCACGATGGAGTGTCTAGTGCGGAGGTATTTCTTCGTTTGCAACAATGAAGCTACTGGTTGTGCTGCTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTGTGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACATGTGCCGCAATGGGCGGCCCGTCCTATTCGCCTGCCCGGAGAACATGTACTTCGATGTGGATACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGACTTCGAGCAGGATCCTTACGAACCGCCCGTACCAGA-GTACAGACCGATCG-AGGCGAACCCATCGCAGCTCGTC-CCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGC-ACCGATACGACCGGCTGC-AGTGC-ATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGACTCGAGTGTCCAGCCGGTACGCT-GTTCGA-CAGCAATCGGTTGGTGTGCGATGCGGCCGATATCGTTTCCTGTGCCTACGC-ACCACCGAAA-CCTTCCATTGGCGGTGGTGGTACTGGCAGTGGCAACTTGCTCGAGGTACTGTGCTTCGGCAAGAAGAATGGCTACAAGTTTGCGCACCCGACCAACTGTGCACGGTACGTCGTGTGCAATGGGCGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGCTTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAGAGTGCTAGGGTGTCGCGGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCTTGACTCTTCATTACAGGTGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTTGAACGGGGGTTTTGTTATTTTAATTGGATTAAAAGCATGCATCAAAACGGAGGGAAGGACATAAGGACAACAGTAGTGCTGAAGTTGTCCT] [+] EMBL BX469881 [GCAAGAATCGGCACGATGGAGTGTCTAGTGCGGAGGTATTTCTTCGTTTGCAACAATGAAGCTACTGGTTGTGCTGCTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTGTGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACATGTGCCGCAATGGGCGGGCCGTCCTATTCGCCTGCCCGGAGAACATGTACTTCGATGTGGATACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGACTTCGAGCAGGATCCTTACGAACCGGCCGTACCAGAGGTACAGACCGATCGAAGGCGAACCCATCGNAGCTCGTCTCCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGCGACCGATACGANCGGNTGCGAGTGCGATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGACTCGAGTGTCCAGCCGGTACGCTGGTTCGAGCAGCAATCGGTTGGTGTGCGATGCGGCCGATATCGNTTCCTGTGCCTACGCGACCACCGAAAGCGTTCCATTGGCGGTGGT ] [+] EMBL BX624363 [ GGTAATTTTTCGTTTGCAACAATGAAGCTACTGGTTGTGCTGCTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTGTGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACATGTGCCGCAATGGGCGGCCCGTCCTATTCGCCTGCCCGGAGAACATGTACTTCGATGTGGATACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGATTTCGAGCAGGATCCTTACGAACCGCCCGTACCAGA GTACAGACCGATCG AAGCGANCCCATCGCAGCTCGTC CCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGC ACCGATACGACCGGCTGC AGTGC ATTCTACCAGTGTACGAANGCTGGCCCGCTGCGACTCGAGTGTCCAGCCGGTACGCT GTTCGA CAGCAATCGGTTGGTGTGCGATGCGGGCGATATCGTTTCCNGTGCCTACGC ACCAACGAAA CC ] [+] EMBL BX627292 [ GCAACAATGAAGCTACTGGTTGTGCTACTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTGTGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACATGTGCCGCAATGGGCGGCCCGTCCTATTCGCCTGCCCNGAGAACATGTACTTCGATGTGGATACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGACTTCGAGCAGGATCCTTACGAACCGCCCGTACCAGA GTACAGACCGATCG AGGCCAACCCATCGCAGCTCGTC CCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGC ACCGATACGACCGGCTGC AGTGC ATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGTCTTGAGTGTCCAGCCGGTACGCT GTTCGA CAGCAATCGGTTGGTGTGTGATGCGGCCGATATCGTTTCCTGTGCCTACGC ACCACCGAAA CCTTCCATTGGCGGTGGTGGTACTGGCAGTGGCAACTTGCTCGAGGTACTGTGCTTCGGCAAGAAGAATGGCTACAAGTTTGCGCACCCGACCAACTGTGCACGGTACGTCGTGTGCAATGGGCGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGC ] [+] EMBL BX625688 [ GCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGC ACCGATACGACCGGCTGC AGTGC ATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGTCTTGAGTGTCCAGCCGGTACGCT GTTCGA CAGCAATCGGTTGGTGTGTGATGCGGCCGATATCGTTTCCTGTGCCTACGC ACCACCGAAA CCTTCCATTGGCGGTGGTGGTACTGGCAGTGGCAACTTGCTCGAGGTACTGTGCTTCGGCAAGAAGAATGGCTACAAGTTTGCGCACCCGACCAACTGTGCACGGTACGTCGTGTGCAATGGGCGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGCTTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAGAGTGCTAGGGTGTCGCGGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCTTGACTCTTCATTACAGGTGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTTGAACGGGGGTTTTGTTATTTTAATTGGATTAAAAGCATGCATCAAAACGGAGGGAAGGACATAAGGACAACAGTAGTGCTGAAGTTGTCCT] consensusID : consensus_6364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [GCAGAATCGCGCACGAGNGGACGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGCTTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAAGTGCTAGGGTGTCGCGGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCTTGACTCTTCATTACAGGTAGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTTGAACGGGGGTTTCNGTTATTTTCATTGGATTAAAAGCATGCATCAAGAACGGAGGGAAGGACATAAGGACAAACAGTAGTGCTGACAGTTGTCCTGCT] [+] EMBL BX468820 [GCAGAATCGCGCACGAGNGGACGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGCTTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAAGTGCTAGGGTGTCGCGGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCTTGACTCTTCATTACAGGTAGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTTGAACGGGGGTTTCNGTTATTTTCATTGGATTAAAAGCATGCATCAAGAACGGAGGGAAGGACATAAGGACAAACAGTAGTGCTGACAGTTGTCCTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6364#0 GCAAGAATCGGCACGATGGAGTGTCTAGTGCGGAGGTATTTCTTCGTTTGCAACAATGAA 60 consensus_6364#1 ------------------------------------------------------------ consensus_6364#0 GCTACTGGTTGTGCTGCTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTG 120 consensus_6364#1 ------------------------------------------------------------ consensus_6364#0 TGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACAT 180 consensus_6364#1 ------------------------------------------------------------ consensus_6364#0 GTGCCGCAATGGGCGGCCCGTCCTATTCGCCTGCCCGGAGAACATGTACTTCGATGTGGA 240 consensus_6364#1 ------------------------------------------------------------ consensus_6364#0 TACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGACTTCGAGCAGGA 300 consensus_6364#1 ------------------------------------------------------------ consensus_6364#0 TCCTTACGAACCGCCCGTACCAGAGTACAGACCGATCGAGGCGAACCCATCGCAGCTCGT 360 consensus_6364#1 ------------------------------------------------------------ consensus_6364#0 CCCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGCACCGATACGAC 420 consensus_6364#1 ------------------------------------------------------------ consensus_6364#0 CGGCTGCAGTGCATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGACTCGAGTGTCCAGC 480 consensus_6364#1 ------------------------------------------------------------ consensus_6364#0 CGGTACGCTGTTCGACAGCAATCGGTTGGTGTGCGATGCGGCCGATATCGTTTCCTGTGC 540 consensus_6364#1 ------------------------------------------------------------ consensus_6364#0 CTACGCACCACCGAAACCTTCCATTGGCGGTGGTGGTACTGGCAGTGGCAACTTGCTCGA 600 consensus_6364#1 ------------------------------------------------------------ consensus_6364#0 GGTACTGTGCTTCGGCAAGAAGAATGGCTACAAGTTTGCGCACCCGACCAACTGTGCACG 660 consensus_6364#1 ---------------------------------------------------------GCA 3 * consensus_6364#0 GTACGTCGTGTGCAATGGGCGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGC 720 consensus_6364#1 GAATCGCGCACG-AGNGGACGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGC 62 * * ** * * ** ***************************************** consensus_6364#0 TTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAGAGTGCTAGGGTGTCGC 780 consensus_6364#1 TTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTA-AGTGCTAGGGTGTCGC 121 ******************************************* **************** consensus_6364#0 GGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCT 840 consensus_6364#1 GGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCT 181 ************************************************************ consensus_6364#0 TGACTCTTCATTACAGGT-GGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTT 899 consensus_6364#1 TGACTCTTCATTACAGGTAGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTT 241 ****************** ***************************************** consensus_6364#0 GAACGGGGGTTT-TGTTATTTTAATTGGATTAAAAGCATGCATCAA-AACGGAGGGAAGG 957 consensus_6364#1 GAACGGGGGTTTCNGTTATTTTCATTGGATTAAAAGCATGCATCAAGAACGGAGGGAAGG 301 ************ ******** *********************** ************* consensus_6364#0 ACATAAGGACAA-CAGTAGTGCTGA-AGTTGTCCT--- 990 consensus_6364#1 ACATAAGGACAAACAGTAGTGCTGACAGTTGTCCTGCT 339 ************ ************ ********* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||