cluster # 6367

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Anopheles gambiae
cluster # 6367 cluster # 6367 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6367#0 length = 659 sequences # 1

consensus_6367#1 length = 638 sequences # 4

consensusID : consensus_6367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [CGCCCCGGTGCAAGATAGTTTTGTAAGTTTTTGAATTTGTTTTATTTGTTTTACCGCTTTCACGTTCAAACGTACGTGTGAACGCATTGTGTCGCCGTATTCGCTAGCGGAAACCGCCAGTGCGTGCAATAGTAGAATCCCTTTTAGTAGGCAGTAGTACAAGTAGTAATAGCCTAGTTGGCTATAGTGTGTAGTATGAAGGGTAGTACAAGTACTACCGGAGAGAGTTGGATAAGTTAATTGGGGTTTTTTGGGGGAGACACGGTGAAGCAGCCGGACGGGGTGAGATCAGCTTAGGTTTAGGCTAGTGCTACAAAGAATGATATTTATTTGATCTATTACTCTATTAACTACTACCGTGTAACAACAAAGTGTTAGGGGGGCTACACCCGTGTTTGCCAACCGTGTTTTAAACTCTTTTTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCGCTTCATGTGTGTGTGTGTGTGTGCGTGTGTTGCGCTGAGTTTTTGGAGTGATGTACTCCAGCAAACCATCCACTCATTTCACTTTCATTCGTATGAAATATTGTATATTGTGTAGGAACGAAAAACGAACAGCAGAGACNAACAAACCCACACAGTTAGCCAGCGAAGAACACGCGCGTGGTCAAGCCCCATTAGGCA]

[+] EMBL BX625550             [CGCCCCGGTGCAAGATAGTTTTGTAAGTTTTTGAATTTGTTTTATTTGTTTTACCGCTTTCACGTTCAAACGTACGTGTGAACGCATTGTGTCGCCGTATTCGCTAGCGGAAACCGCCAGTGCGTGCAATAGTAGAATCCCTTTTAGTAGGCAGTAGTACAAGTAGTAATAGCCTAGTTGGCTATAGTGTGTAGTATGAAGGGTAGTACAAGTACTACCGGAGAGAGTTGGATAAGTTAATTGGGGTTTTTTGGGGGAGACACGGTGAAGCAGCCGGACGGGGTGAGATCAGCTTAGGTTTAGGCTAGTGCTACAAAGAATGATATTTATTTGATCTATTACTCTATTAACTACTACCGTGTAACAACAAAGTGTTAGGGGGGCTACACCCGTGTTTGCCAACCGTGTTTTAAACTCTTTTTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCGCTTCATGTGTGTGTGTGTGTGTGCGTGTGTTGCGCTGAGTTTTTGGAGTGATGTACTCCAGCAAACCATCCACTCATTTCACTTTCATTCGTATGAAATATTGTATATTGTGTAGGAACGAAAAACGAACAGCAGAGACNAACAAACCCACACAGTTAGCCAGCGAAGAACACGCGCGTGGTCAAGCCCCATTAGGCA]




>consensus_6367#0
CGCCCCGGTGCAAGATAGTTTTGTAAGTTTTTGAATTTGTTTTATTTGTTTTACCGCTTT
CACGTTCAAACGTACGTGTGAACGCATTGTGTCGCCGTATTCGCTAGCGGAAACCGCCAG
TGCGTGCAATAGTAGAATCCCTTTTAGTAGGCAGTAGTACAAGTAGTAATAGCCTAGTTG
GCTATAGTGTGTAGTATGAAGGGTAGTACAAGTACTACCGGAGAGAGTTGGATAAGTTAA
TTGGGGTTTTTTGGGGGAGACACGGTGAAGCAGCCGGACGGGGTGAGATCAGCTTAGGTT
TAGGCTAGTGCTACAAAGAATGATATTTATTTGATCTATTACTCTATTAACTACTACCGT
GTAACAACAAAGTGTTAGGGGGGCTACACCCGTGTTTGCCAACCGTGTTTTAAACTCTTT
TTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCGCTTCATGTGTGTGTGTGTG
TGTGCGTGTGTTGCGCTGAGTTTTTGGAGTGATGTACTCCAGCAAACCATCCACTCATTT
CACTTTCATTCGTATGAAATATTGTATATTGTGTAGGAACGAAAAACGAACAGCAGAGAC
NAACAAACCCACACAGTTAGCCAGCGAAGAACACGCGCGTGGTCAAGCCCCATTAGGCA

consensusID : consensus_6367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 638
fasta sequence

                              [GAATCGCCCGAGGGTTATGTAGTTTGAATTTGGTCCCATTGTTTTACCGCTTTCACGTTCAAATACGTGTGAACGCATTGTGTCGCCGTATTCGATAGCGGAAACCGCCAGTGCGTGCAATAGTAGAATCCCTTTTAGTAGGCAGTAGCTACAAGTAGTACNTAGCCTANGTGGCTATAGTGCTGTAGCTGTACTGAACGGGTAGTACAAGTACTACCGGCAAGAGTTGGATAAGATAATTGGGACTTTTGAGCGGGGGCGAGACACGGTGAAGCAGCCGGACGGGGTGAGATCAGCTTAGGTTTAGGCTAGCGCTACAAAGAATGATATTTATTTGATCTATTACTCTATTAACTACTACCGTGTAACAACAAAGTGTTA-GGGGGGCTACACCCGTGTTTGCCAACCGTGTTT-TAAACTCTTCTTTTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCGCTTCATGTGTGTGTGTGTGCGTGTGTTGCGCTGAGTTTTTGGAGTGATGTACTCCAGCAAACCATCCACTCATTTCACTTTCATTCGTATGAAATATTGTATATTGTGTAGGAACGAAAAACGAACAGCAAAGAGCATGGTAGCATAAAACGTACTAAAGCAAAGCAAAGC]

[+] EMBL AL932119             [GAATCGCCCGAGGGTTATGTAGTTTGAATTTGGTCCCATTGTTTTACCGCTTTCACGTTCAAATACGTGTGAACGCATTGTGTCGCCGTATTCGATAGCGGAAACCGCCAGTGCGTGCAATAGTAGAATCCCTTTTAGTAGGCAGTAGCTACAAGTAGTACNTAGCCTANGTGGCTATAGTGCTGTAGCTGTACTGAACGGGTAGTACAAGTACTACCGGCAAGAGTTGGATAAGATAATTGGGACTTTTGAGCGGGGGCGAGACACGGTGAAGCAGCCGGACGGGGTGAGATCAGCTTAGGTTTAGGCTAGCGCTACAAAGAATGATATTTATTTGATCTATTACTCTATTAACTACTACCGTGTAACAACAAAGTGTTACGGGGGGCTACACCCGTGTTTGCCAACCGTGTTT TAAACTCTTC TTTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCGCTTCATGTGTGTGTGTGTGCGTGT                                                                                                                                                   ]
[+] EMBL BX612460             [                                  ttatTTGTTTTACCGCTTTCACGTTCAAATACGTGTGAACGCATTGTGTCGCCGTATTCGATAGCGGAAACCGCCAGTGCGTGCAATAGTAGAATCCCTTTTAGTAGGCAGTAG TACAAGTAGTA GTAGCCTAGGTGGCTATAGTG TGTAG TGTA TGAA GGGTAGTACAAGTACTACCGGCAAGAGTTGGATAAGATAATTGGGA TTTTGAG GGGGG GAGACACGGTGAAGCAGCCGGACGGGGTGAGATCAGCTTAGGTTTAGGCTAGCGCTACAAAGAATGATATTTATTTGATCTATTACTCTATTAACTACTACCGTGTAACAACAAAGTGTTA GGGGGGCTACACCCGTGTTTGCCAACCGTGTTT TAAACTCTTCTTTTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCGCTTCATGTGTGTGTGTGTGCGTGTGTTGCGCTGAGTTTTTGGAGTGATGTACTCCAGCAAACCATCCACTCATTTCACTTTCATTCGTATGAAATATTGTATATTtg                                                                ]
[+] EMBL BX614684             [                                                                                                                                                                                                                                                                                    GCCGGACGGGGTGAGATCAGCTTAGGTTTAGGCTTTCGCTACAAAGAATGATATTTATTTGATCTATTACTCTATTAACTACTACCGTGTAACAACAAAGTGTTA GGGGGGCTACACCCGTGTTTGCCAACCGTGTTT TAAACTCTTCTTTTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCACTTCATGTGTGTGTGTGTGCGTGTGTTGCGCTGAGTTTTTGGAGTGATGTACTCCAGCAAACCATCCACTCATTTCACTTTCATTCGTATGAAATATTGTATATTGTGTAGGAACGAAAAACGAACAGCAAAGAGCATGGTAGCATAAAACGTACTAAAGCAAAGCAAAGC]
[+] EMBL BX627439             [                                                                                                                                                                                                                                                                                                                                                                                                                   CCAACCGTGTTTGTANACTCTTCTTTTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCGCTTCATGTGTGTGTGTGTGCGTGTGTTGCGCTGAGTTTTTGGAGTGATGTACTCCANCAAACCATCCACTCATTTCACTTNCATTCCNATGAAATATTGTATATTGTGTAGGAACTANAAACGAACAGCAg                                        ]




>consensus_6367#1
GAATCGCCCGAGGGTTATGTAGTTTGAATTTGGTCCCATTGTTTTACCGCTTTCACGTTC
AAATACGTGTGAACGCATTGTGTCGCCGTATTCGATAGCGGAAACCGCCAGTGCGTGCAA
TAGTAGAATCCCTTTTAGTAGGCAGTAGCTACAAGTAGTACNTAGCCTANGTGGCTATAG
TGCTGTAGCTGTACTGAACGGGTAGTACAAGTACTACCGGCAAGAGTTGGATAAGATAAT
TGGGACTTTTGAGCGGGGGCGAGACACGGTGAAGCAGCCGGACGGGGTGAGATCAGCTTA
GGTTTAGGCTAGCGCTACAAAGAATGATATTTATTTGATCTATTACTCTATTAACTACTA
CCGTGTAACAACAAAGTGTTAGGGGGGCTACACCCGTGTTTGCCAACCGTGTTTTAAACT
CTTCTTTTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCGCTTCATGTGTGTG
TGTGTGCGTGTGTTGCGCTGAGTTTTTGGAGTGATGTACTCCAGCAAACCATCCACTCAT
TTCACTTTCATTCGTATGAAATATTGTATATTGTGTAGGAACGAAAAACGAACAGCAAAG
AGCATGGTAGCATAAAACGTACTAAAGCAAAGCAAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6367#0      CGCCCCGGTGCAAGATAGTTTTGTAAGTTTTTGAATTTGTTTTATTTGTTTTACCGCTTT 60
consensus_6367#1      ----GAATCGCCCGAGGGTTATGTAG---TTTGAATTTGGTCCCATTGTTTTACCGCTTT 53
                               **  **  *** ****    ********** *    ***************

consensus_6367#0      CACGTTCAAACGTACGTGTGAACGCATTGTGTCGCCGTATTCGCTAGCGGAAACCGCCAG 120
consensus_6367#1      CACGTTCAAA--TACGTGTGAACGCATTGTGTCGCCGTATTCGATAGCGGAAACCGCCAG 111
                      **********  ******************************* ****************

consensus_6367#0      TGCGTGCAATAGTAGAATCCCTTTTAGTAGGCAGTAG-TACAAGTAGTA-ATAGCCTAGT 178
consensus_6367#1      TGCGTGCAATAGTAGAATCCCTTTTAGTAGGCAGTAGCTACAAGTAGTACNTAGCCTANG 171
                      ************************************* ***********  *******  

consensus_6367#0      TGGCTATAGTG-TGTAGTA----TGAA-GGGTAGTACAAGTACTACCGGAGAGAGTTGGA 232
consensus_6367#1      TGGCTATAGTGCTGTAGCTGTACTGAACGGGTAGTACAAGTACTACCGGCAAGAGTTGGA 231
                      *********** *****      **** *********************  *********

consensus_6367#0      TAAGTTAATTGGGGTTTTTT-----GGGGGAGACACGGTGAAGCAGCCGGACGGGGTGAG 287
consensus_6367#1      TAAGATAATTGGGACTTTTGAGCGGGGGCGAGACACGGTGAAGCAGCCGGACGGGGTGAG 291
                      **** ********  ****      *** *******************************

consensus_6367#0      ATCAGCTTAGGTTTAGGCTAGTGCTACAAAGAATGATATTTATTTGATCTATTACTCTAT 347
consensus_6367#1      ATCAGCTTAGGTTTAGGCTAGCGCTACAAAGAATGATATTTATTTGATCTATTACTCTAT 351
                      ********************* **************************************

consensus_6367#0      TAACTACTACCGTGTAACAACAAAGTGTTAGGGGGGCTACACCCGTGTTTGCCAACCGTG 407
consensus_6367#1      TAACTACTACCGTGTAACAACAAAGTGTTAGGGGGGCTACACCCGTGTTTGCCAACCGTG 411
                      ************************************************************

consensus_6367#0      TTTTAAACTCTT--TTTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCGCTTC 465
consensus_6367#1      TTTTAAACTCTTCTTTTTTTCTTAATCTGATTCTATCACATTGAACCATCCCCCCGCTTC 471
                      ************  **********************************************

consensus_6367#0      ATGTGTGTGTGTGTGTGTGCGTGTGTTGCGCTGAGTTTTTGGAGTGATGTACTCCAGCAA 525
consensus_6367#1      ATGTGTGTGTGTGT----GCGTGTGTTGCGCTGAGTTTTTGGAGTGATGTACTCCAGCAA 527
                      **************    ******************************************

consensus_6367#0      ACCATCCACTCATTTCACTTTCATTCGTATGAAATATTGTATATTGTGTAGGAACGAAAA 585
consensus_6367#1      ACCATCCACTCATTTCACTTTCATTCGTATGAAATATTGTATATTGTGTAGGAACGAAAA 587
                      ************************************************************

consensus_6367#0      ACGAACAGCAGAGACNAACAAACCCACACAGTTAGCCAGCGAAGAACACGCGCGTGGTCA 645
consensus_6367#1      ACGAACAGCAAAGAGCA-TGGTAGCATAAAACGTACTAAAGCAAAGCAAA-GC------- 638
                      ********** ***  *       ** * *     * *  * * * **   **       

consensus_6367#0      AGCCCCATTAGGCA 659
consensus_6367#1      --------------