These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 641 fasta sequence [ACTCCCTCCCCCCTATCTGTGAGGCTCGAATTGTGATGATCGTATCGAAAAGTGTCTAAGTGTGTGTGTGAGTATCTTTAGATCATTCCTCTAAATTACCCTCCATTCGCGAGAGCACCTTTCTTCCCCCACGTGTCCCGTTGACAAAGTATTTGTTTTGCGGTGTGTTATGCTTCTTATGCAGCAAACAAACACAACACACTCCGTTTGTGTACTTATCTTTGCCAAACTGAGCCAGCAATTGTCACATAAGCCGCTGCCTCCGCCGCCGCCGCATTGCCGTAGATTGCGTTTGTTGTACAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCATTTGCCACCATCAACTCGTTGGTTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTATGTGATCAGTATGTGTATGTGTGTGTGCGTGTGTGAGTGTTTGTAAAGAGACGGCCGTTATGGATGCCGTGTTAGGCGCGGTTATGGATTTCTGTTTTCCACGCCGGCTCACCTCAATCCCATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTACGTTATTTTAATATCCATATNAAACGATCTGTATAGCAGTTT] [+] EMBL BX626568 [ACTCCCTCCCCCCTATCTGTGAGGCTCGAATTGTGATGATCGTATCGAAAAGTGTCTAAGTGTGTGTGTGAGTATCTTTAGATCATTCCTCTAAATTACCCTCCATTCGCGAGAGCACCTTTCTTCCCCCACGTGTCCCGTTGACAAAGTATTTGTTTTGCGGTGTGTTATGCTTCTTATGCAGCAAACAAACACAACACACTCCGTTTGTGTACTTATCTTTGCCAAACTGAGCCAGCAATTGTCACATAAGCCGCTGCCTCCGCCGCCGCCGCATTGCCGTAGATTGCGTTTGTTGTACAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCATTTGCCACCATCAACTCGTTGGTTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTATGTGATCAGTATGTGTATGTGTGTGTGCGTGTGTGAGTGTTTGTAAAGAGACGGCCGTTATGGATGCCGTGTTAGGCGCGGTTATGGATTTCTGTTTTCCACGCCGGCTCACCTCAATCCCATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTACGTTATTTTAATATCCATATNAAACGATCTGTATAGCAGTTT] [+] EMBL AGA280440 [ nATTGCGTTTGTTGTACAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCATTTGCCACCATCAACTCGTTGGTTCTATTTTGATCTCTTTTATC ] [-] EMBL AGA282144 [ TTGTTGTACAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCATTTGCCACCATCAAGTCGTTGGTTCTATTTTGATC ] [-] EMBL AGA282133 [ TTGTACAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCATTTGCCACCATCAAGTCGTTGGTTCTATTTTGATC ] consensusID : consensus_6375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [TTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTATGTGATCAGTATGTGTATGTGTGTGAATGTTTGTAAAAAGACGGCCGTTATGGATGCCGTGTTAGGCGCGGTATGGATTTCTGTTTTCCACGCCGGCTCACCTCACCCCATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTACGTTATTTTAATATCCATATTAAACGATCTGTATAGCAGTTTTATGTTAATGTTATTCGGGGACAAGCACAACCGAAGCTTATCGATATGTAGAAGTAAACACGATCTATACTGCTGCTGCTGCTGCTATTACTGTAGTACACAGGGAGAGCAGCGGTTATTAGAAGTAAGCGAATGTGTTTTAAAACTATAAAACAAGCTAAAAGGTCCA] [-] EMBL BM578360 [TTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTATGTGATCAGTATGTGTATGTGTGTGAATGTTTGTAAAAAGACGGCCGTTATGGATGCCGTGTTAGGCGCGGTATGGATTTCTGTTTTCCACGCCGGCTCACCTCACCCCATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTACGTTATTTTAATATCCATATTAAACGATCTGTATAGCAGTTTTATGTTAATGTTATTCGGGGACAAGCACAACCGAAGCTTATCGATATGTAGAAGTAAACACGATCTATACTGCTGCTGCTGCTGCTATTACTGTAGTACACAGGGAGAGCAGCGGTTATTAGAAGTAAGCGAATGTGTTTTAAAACTATAAAACAAGCTAAAAGGTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6375#0 ACTCCCTCCCCCCTATCTGTGAGGCTCGAATTGTGATGATCGTATCGAAAAGTGTCTAAG 60 consensus_6375#1 ------------------------------------------------------------ consensus_6375#0 TGTGTGTGTGAGTATCTTTAGATCATTCCTCTAAATTACCCTCCATTCGCGAGAGCACCT 120 consensus_6375#1 ------------------------------------------------------------ consensus_6375#0 TTCTTCCCCCACGTGTCCCGTTGACAAAGTATTTGTTTTGCGGTGTGTTATGCTTCTTAT 180 consensus_6375#1 ------------------------------------------------------------ consensus_6375#0 GCAGCAAACAAACACAACACACTCCGTTTGTGTACTTATCTTTGCCAAACTGAGCCAGCA 240 consensus_6375#1 ------------------------------------------------------------ consensus_6375#0 ATTGTCACATAAGCCGCTGCCTCCGCCGCCGCCGCATTGCCGTAGATTGCGTTTGTTGTA 300 consensus_6375#1 ------------------------------------------------------------ consensus_6375#0 CAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCAT 360 consensus_6375#1 ------------------------------------------------------------ consensus_6375#0 TTGCCACCATCAACTCGTTGGTTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTA 420 consensus_6375#1 ---------------------TTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTA 39 *************************************** consensus_6375#0 TGTGATCAGTATGTGTATGTGTGTGTGCGTGTGTGAGTGTTTGTAAAGAGACGGCCGTTA 480 consensus_6375#1 TGTGATCAGTATGTGTATGT----------GTGTGAATGTTTGTAAAAAGACGGCCGTTA 89 ******************** ****** ********** ************ consensus_6375#0 TGGATGCCGTGTTAGGCGCGGTTATGGATTTCTGTTTTCCACGCCGGCTCACCTCAATCC 540 consensus_6375#1 TGGATGCCGTGTTAGGCGCGGT-ATGGATTTCTGTTTTCCACGCCGGCTCACCTCA-CCC 147 ********************** ********************************* ** consensus_6375#0 CATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTAC 600 consensus_6375#1 CATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTAC 207 ************************************************************ consensus_6375#0 GTTATTTTAATATCCATATNAAACGATCTGTATAGCAGTTT------------------- 641 consensus_6375#1 GTTATTTTAATATCCATATTAAACGATCTGTATAGCAGTTTTATGTTAATGTTATTCGGG 267 ******************* ********************* consensus_6375#0 ------------------------------------------------------------ consensus_6375#1 GACAAGCACAACCGAAGCTTATCGATATGTAGAAGTAAACACGATCTATACTGCTGCTGC 327 consensus_6375#0 ------------------------------------------------------------ consensus_6375#1 TGCTGCTATTACTGTAGTACACAGGGAGAGCAGCGGTTATTAGAAGTAAGCGAATGTGTT 387 consensus_6375#0 ------------------------------ consensus_6375#1 TTAAAACTATAAAACAAGCTAAAAGGTCCA 417 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||