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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1101 fasta sequence
[ACTCGGAAGACACTGAAGCTACCAGAAACAAAGTGTTGTTTCTCCCATGGTGGGTGATTTGAATTGATTCCAGTTTTCTTCCAGAGGGTGAGATAGTGAGTATGTTTACTTGACGTCATCATGTTGCAGGTCATTAAACTCGATGCAGGTTTGGATTTCAACAATGTCGTTGATGGCAGCGGTTAAATCCATCCCGCCCTCTGTAGTCAACCACGAGCTAATGTAACCTTAGAAAACGCAAAGGAATGAGCAGCAAAAGCAAATGTTAAAAAGAAGATAAGAAACAAACACACTAACCTAACGAAAATGGTAAAAAGAGTTCCTATAAATTAAGTACTACTAACTAACAATACTCACTCGCAACACGCAGTGACTGTTTATGTTTACATTTTTCTTTGATTTGTTCATTTGTTTTCATGCTAGTTTTGCGTTTCTTTTTTAAATTAGTTTTTAACACCATTTTTTGGCTTTTTATTTTCCTGTTGTCTTTTAATACGGTCGGTGAAATACTACAACGTTACTTTTACATTTGTGTAACCCTTTATCAATATACAACAAAAGGCAGAAACACTGATCTACGATGTAAGAATTATTTGATGAGTTTGATGTATGAAAAAATGTAAAGATAACATTAAAAATATGGTGAAAAGTAACTATTAGCTGTAGGAACCGAATCGGTACAGTGAGCCGCAAATTGCCCAAAAGTAAACCAAAAACGAATGTTCTTAAATCGTTTTACGTAACACAA-CCGTCGTGCAGACAGCATTTGATAATGGTTTTATGTTGAATACTTTCAATCCAATCCACAAAACGACAAGTGTATGAAGAGTTTT---T-ACTTCAGCATAAAGACATATGTAAATCAACAGTCAAACCTGCACTGAAAAGAGCAAGTGCATTCAATCAAACAATTACAGAAGAGAAAAAATCAACCTACGAAATGAATTACAGAGTAAACATTACCGGCAAATGTATGTTGGCAGAAAGAACTAAGGTTTAAGGTAACCTCTGTAATATTGCTATTTGCTTTCACCTTCTTCACATGCCCTCCTGATCCTTCACCATCAGTCAATGTCAACTAAACTATACCGCAGCTAACACTAA]
[+] EMBL BX617000 [ACTCGGAAGACACTGAAGCTACCAGAAACAAAGTGTTGTTTCTCCCATGGTGGGTGATTTGAATTGATTCCAGTTTTCTTCCAGAGGGTGAGATAGTGAGTATGTTTACTTGACGTCATCATGTTGCAGGTCATTAAACTCGATGCAGGTTTGGATTTCAACAATGTCGTTGATGGCAGCGGTTAAATCCATCCCGCCCTCTGTAGTCAACCACGAGCTAATGTAACCTTAGAAAACGCAAAGGAATGAGCAGCAAAAGCAAATGTTAAAAAGAAGATAAGAAACAAACACACTAACCTAACGAAAATGGTAAAAAGAGTTCCTATAAATTAAGTACTACTAACTAACAATACTCACTCGCAACACGCAGTGACTGTTTATGTTTACATTTTTCTTTGATTTGTTCATTTGTTTTCATGCTAGTTTTGCGTTTCTTTTTTAAATTAGTTTTTAACACCATTTTTTGGCTTTTTATTTTCCTGTTGTCTTTTAATACGGTCGGTGAAATACTACAACGTTACTTTTACATTTGTGTAACCCTTTATCAATATACAACAAAAGGCAGAAACACTGATCTACGATGTAAGAATTATTTGATGAGTTTGATGTATGAAAAAATGTAAAGATAACATTAAAAATATGGTGAAAAGTAACTATTAGCTGTAGGAACCGAATCGGTACAGTGAGCCGCAAATTGCCCAAAAGTAAACCAAAAACGAATGTTCTTAAATCGTTTTACGTAACACAACCCGTCGTGCAGACAGCATTTGATAATGGTTTTATGTTGAATA ]
[+] EMBL BX626199 [ GCAAAGGAAAGAGCAGCAAANGCAAATGTTAAAAAGAAGATAAGAAACAAACACACTAACCTAACGAAAATGGTAAAAAGAGTTCCTATAAATTAAGTACTACTAACTAACAATACTCACTCGCAACACGCAGTGACTGTTTATGTTTATATTTTTCGTTGATTTGTTAATTTGTTTTCATGATAGTTTTGCGTTTCTTTTTTAAATTAGTTTTTAACACCTTTTTTTTACTTTTTATTTTCCTGTTGTCTTTTAATACGGTCGGTGAAATACTACAACGTTACTTTTACATTTGTGTAACCCTTTATCAATATACAACAAAAAGCAGAAACACTGATCTACGATGTAAGAATTATTTGATGAGTTTGATGTATGAAAAATTGTAAAGATAACATTAAAAATATGGTGAAAAGTAACTATTAGCTGTAGGAACCGAATCGGTACAGTGAGCCGCAAATTGCCCAAAAGTAAACCAAAAACAGATGTTCTTAAATCGTTTTACGTAACACAA CCGTCGTGCAGACAGCGTTTGATAATGGTTTTATGTTGAATACTTTCAATCCAATCCACAAAACGACAAGTGTATGAAGAGTTTTACATAACTTCAGCATAAAGACAT ]
[+] EMBL BX617212 [ CTATTAGCTGTAGGAACCGAATCGGTACAGTGAGCCGCAAATTGCCCAAAAGTAAACCAAAAACGAATGTTCTTAAATCGTTTTACGTAACACAA CCGTCGTGCAGACAGCATTTGATAATGGTTTTATGTTGAATACTTTCAATCCAATCCACAAAACGACAAGTGTATGAAGAGTTTT T ACTTCAGCATAAAGACATATGTAAATCAACAGTCAAACCTGCACTGAAAAGAGCAAGTGCATTCAATCAAACAATTACAGAAGAGAAAAAATCAACCTACGAAATGAATTACAGAGTAAACATTACCGGCAAATGTATGTTGGCAGAAAGAACTAAGGTTTAAGGTAACCTCTGTAATATTGCTATTTGCTTTCACCTTCTTCACATGCCCTCCTGATCCTTCACCATCAGTCAATGTCAACTAAACTATACCGCAGCTAACACTAA]
[+] EMBL BX610459 [ ACTTTCAATCCAATCCACAAAACGACAAGGGTATGAAGAGTTTT T ACTTCAGCATAAAGACATATGTAAATCAACAGTCAAACCGGCACTGAAAAGAGCAAGGGCATTCAATCAAACAATTACAGAAGAGAAAAAATCAACCTACGAAAGGAATTACAGAGTAAACATTACCGG ]
consensusID : consensus_6379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[CCGCCCACGCGTCCGCAGATTTGATAATGGTTTTATGTTGAATACTTTCAATCCAATCCACAAAACGACAAGTGTATGAAGAGTTTTACATACCTTCAGCATAAAGACATATGTAAATCAACAGTCAAACTCGCACTTAAAAGAGCAAGTGCATCCAATCAAACAATTACAGAAGAGAAAAAAACAACCTACGAAATGAATTACAGAGTAAACATTACCGACAAATGTATGCTGGCAGAAAGAACTATGGTTTAAGGTAACCTCTGTAATATTGCCATTTGCTTTCACCTTTTCCACATGCCCTCCTGATCCTTCACCATCAGTCAACGTCAACTAAACTATACCGCAGCTAACGCTAATAACGAGCCGGAGAACATTTCAACCCAAGCTTACTTATTAACGAGCTGAAGGAATTCAAACGAAATGCAACGTAACAGGACAATGGTCCTTACAATCTAGCACAAAGGAGGGGAGATACGTGGATGAAATGAAGCATACACACACACACAATTGCAGAAAAAATCTACTTACATTGTATAAGATATATTGTCAGATGTAAAAGAAGAAAAATAAACTTATTTGGTAGTC]
[+] EMBL BM609534 [CCGCCCACGCGTCCGCAGATTTGATAATGGTTTTATGTTGAATACTTTCAATCCAATCCACAAAACGACAAGTGTATGAAGAGTTTTACATACCTTCAGCATAAAGACATATGTAAATCAACAGTCAAACTCGCACTTAAAAGAGCAAGTGCATCCAATCAAACAATTACAGAAGAGAAAAAAACAACCTACGAAATGAATTACAGAGTAAACATTACCGACAAATGTATGCTGGCAGAAAGAACTATGGTTTAAGGTAACCTCTGTAATATTGCCATTTGCTTTCACCTTTTCCACATGCCCTCCTGATCCTTCACCATCAGTCAACGTCAACTAAACTATACCGCAGCTAACGCTAATAACGAGCCGGAGAACATTTCAACCCAAGCTTACTTATTAACGAGCTGAAGGAATTCAAACGAAATGCAACGTAACAGGACAATGGTCCTTACAATCTAGCACAAAGGAGGGGAGATACGTGGATGAAATGAAGCATACACACACACACAATTGCAGAAAAAATCTACTTACATTGTATAAGATATATTGTCAGATGTAAAAGAAGAAAAATAAACTTATTTGGTAGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6379#0 ACTCGGAAGACACTGAAGCTACCAGAAACAAAGTGTTGTTTCTCCCATGGTGGGTGATTT 60
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 GAATTGATTCCAGTTTTCTTCCAGAGGGTGAGATAGTGAGTATGTTTACTTGACGTCATC 120
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 ATGTTGCAGGTCATTAAACTCGATGCAGGTTTGGATTTCAACAATGTCGTTGATGGCAGC 180
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 GGTTAAATCCATCCCGCCCTCTGTAGTCAACCACGAGCTAATGTAACCTTAGAAAACGCA 240
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 AAGGAATGAGCAGCAAAAGCAAATGTTAAAAAGAAGATAAGAAACAAACACACTAACCTA 300
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 ACGAAAATGGTAAAAAGAGTTCCTATAAATTAAGTACTACTAACTAACAATACTCACTCG 360
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 CAACACGCAGTGACTGTTTATGTTTACATTTTTCTTTGATTTGTTCATTTGTTTTCATGC 420
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 TAGTTTTGCGTTTCTTTTTTAAATTAGTTTTTAACACCATTTTTTGGCTTTTTATTTTCC 480
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 TGTTGTCTTTTAATACGGTCGGTGAAATACTACAACGTTACTTTTACATTTGTGTAACCC 540
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 TTTATCAATATACAACAAAAGGCAGAAACACTGATCTACGATGTAAGAATTATTTGATGA 600
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 GTTTGATGTATGAAAAAATGTAAAGATAACATTAAAAATATGGTGAAAAGTAACTATTAG 660
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 CTGTAGGAACCGAATCGGTACAGTGAGCCGCAAATTGCCCAAAAGTAAACCAAAAACGAA 720
consensus_6379#1 ------------------------------------------------------------
consensus_6379#0 TGTTCTTAAATCGTTTTACGTAACACAACCGTCGTGCAGACAGCATTTGATAATGGTTTT 780
consensus_6379#1 -------------------------CCGCCCACGCGTCCGCAG-ATTTGATAATGGTTTT 34
* ** ** * *** ****************
consensus_6379#0 ATGTTGAATACTTTCAATCCAATCCACAAAACGACAAGTGTATGAAGAGTTTT---TAC- 836
consensus_6379#1 ATGTTGAATACTTTCAATCCAATCCACAAAACGACAAGTGTATGAAGAGTTTTACATACC 94
***************************************************** ***
consensus_6379#0 TTCAGCATAAAGACATATGTAAATCAACAGTCAAACCTGCACTGAAAAGAGCAAGTGCAT 896
consensus_6379#1 TTCAGCATAAAGACATATGTAAATCAACAGTCAAACTCGCACTTAAAAGAGCAAGTGCAT 154
************************************ ***** ****************
consensus_6379#0 TCAATCAAACAATTACAGAAGAGAAAAAATCAACCTACGAAATGAATTACAGAGTAAACA 956
consensus_6379#1 CCAATCAAACAATTACAGAAGAGAAAAAAACAACCTACGAAATGAATTACAGAGTAAACA 214
**************************** ******************************
consensus_6379#0 TTACCGGCAAATGTATGTTGGCAGAAAGAACTAAGGTTTAAGGTAACCTCTGTAATATTG 1016
consensus_6379#1 TTACCGACAAATGTATGCTGGCAGAAAGAACTATGGTTTAAGGTAACCTCTGTAATATTG 274
****** ********** *************** **************************
consensus_6379#0 CTATTTGCTTTCACCTTCTTCACATGCCCTCCTGATCCTTCACCATCAGTCAATGTCAAC 1076
consensus_6379#1 CCATTTGCTTTCACCTTTTCCACATGCCCTCCTGATCCTTCACCATCAGTCAACGTCAAC 334
* *************** * ********************************* ******
consensus_6379#0 TAAACTATACCGCAGCTAACACTAA----------------------------------- 1101
consensus_6379#1 TAAACTATACCGCAGCTAACGCTAATAACGAGCCGGAGAACATTTCAACCCAAGCTTACT 394
******************** ****
consensus_6379#0 ------------------------------------------------------------
consensus_6379#1 TATTAACGAGCTGAAGGAATTCAAACGAAATGCAACGTAACAGGACAATGGTCCTTACAA 454
consensus_6379#0 ------------------------------------------------------------
consensus_6379#1 TCTAGCACAAAGGAGGGGAGATACGTGGATGAAATGAAGCATACACACACACACAATTGC 514
consensus_6379#0 ------------------------------------------------------------
consensus_6379#1 AGAAAAAATCTACTTACATTGTATAAGATATATTGTCAGATGTAAAAGAAGAAAAATAAA 574
consensus_6379#0 --------------
consensus_6379#1 CTTATTTGGTAGTC 588
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||