These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 810 fasta sequence [AATCTCTGAAAATTATCCGTGCATTTGAGTAAAAGGATCAGTGGAACGTAATGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAACAAGGAAAGTCAAAGTAATAGGATAGTATCTACGGGAGAGTGGCGTACGGTGAAGGACAAGCTGAGCTCTGTAAAAAAAAACAAAAACACATACACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGCCCTCGCCGCCCTCCCTTCTTAGTCTAGATTTCGTCACGAAACAAACAAAAAGACGGTGAGGGGACAGAGACCCCTGGTTCACC] [+] EMBL BX617080 [AATCTCTGAAAATTATCCGTGCATTTGAGTAAAAGGATCAGTGGAACGTAATGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAACAAGGAAAGTCAAAGTAATAGGATAGTATCTACGGGAGAGTGGCGTACGGTGAAGGACAAGCTGAGCTCTGTAAAAAAAAACAAAAACACATACACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGC ] [+] EMBL BX615183 [ GAGCTCTGTAAAAAAAAACAAAAACACTTTCACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGCCCTCGCCGCCCTCCCTTCTTAGTCTAGATTTCGTCACGAAACAAACAAAAAGACGGTGAGGGGACAGAGACCCCTGGTTCACC] [+] EMBL BX613583 [ AAAACACATACACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGTGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATTCATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGATACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGCCCTCGC ] [+] EMBL BX614278 [ CAAAAAAAAACCGGGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGTGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATT ] consensusID : consensus_6400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [AGAATCCCCGCAGGTTACATTGGCTTTATTTCCTTCCTGGTAAAGGTTCTAATTGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGNATACAAGCATACAACAACCAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACNCTTAAACTTTACACGACCTGAAGACACAAATACACACTAAACGAAACACACTCTCTCTGGGAGTNGGTNNNGATTNACGGCNGATGCCGTATGATCTATAAAACACCACATTCACCACTAAACNATACACCACACCACACCAACNAATACACAGTACACGTACACAGCAAACACNTCACCACAAACTTAGTGCTATCGGTAATTNCTCTGTAATCTCCCTGGTATGNTCGAGTACTCACTNTGCNCAGCTAATACACGCCCAATGGNAGTCGNNCCTCGCGCCGGGCCTCCCCTTTACTATACAGGTCCTCAAGAATATTTCGGNTTCCACAAAACACCAAANAACCAACACAAACAGACACGANGGTAGAGAGGGGAACAAGGAAGACACACCCCCTGGGGTTTCCACACCCTTAAAACGTTACCCCTANTACNGGTGAGGCNAANTATCGGCCCAAACTTGGCNGCCGCTTCATCTAGGCCGGCGGCTACNC] [+] EMBL AL692359 [AGAATCCCCGCAGGTTACATTGGCTTTATTTCCTTCCTGGTAAAGGTTCTAATTGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGNATACAAGCATACAACAACCAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACNCTTAAACTTTACACGACCTGAAGACACAAATACACACTAAACGAAACACACTCTCTCTGGGAGTNGGTNNNGATTNACGGCNGATGCCGTATGATCTATAAAACACCACATTCACCACTAAACNATACACCACACCACACCAACNAATACACAGTACACGTACACAGCAAACACNTCACCACAAACTTAGTGCTATCGGTAATTNCTCTGTAATCTCCCTGGTATGNTCGAGTACTCACTNTGCNCAGCTAATACACGCCCAATGGNAGTCGNNCCTCGCGCCGGGCCTCCCCTTTACTATACAGGTCCTCAAGAATATTTCGGNTTCCACAAAACACCAAANAACCAACACAAACAGACACGANGGTAGAGAGGGGAACAAGGAAGACACACCCCCTGGGGTTTCCACACCCTTAAAACGTTACCCCTANTACNGGTGAGGCNAANTATCGGCCCAAACTTGGCNGCCGCTTCATCTAGGCCGGCGGCTACNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6400#0 AATCTCTGAAAATTATCCGTGCATTTGAGTAAAAGGATCAGTGGAACGTAATGCGGAGAG 60 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAACAAGGAA 120 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 AGTCAAAGTAATAGGATAGTATCTACGGGAGAGTGGCGTACGGTGAAGGACAAGCTGAGC 180 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 TCTGTAAAAAAAAACAAAAACACATACACACATAATTATCAAACCTTGAACCAGACATTG 240 consensus_6400#1 --------------------------------------AGAATCCCCGCAGGTTACATTG 22 ** ** * * ****** consensus_6400#0 GCTTTAGTTTCCTTCCTGTAAAGGTTCTAAG-GAAGAGGGAGGCAAAGATAGGGGATGAA 299 consensus_6400#1 GCTTTATTTCCTTCCTGGTAAAGGTTCTAATTGAAGAGGGAGGCAAAGATAGGGGATGAA 82 ****** ** * * * ************* **************************** consensus_6400#0 AGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATC 359 consensus_6400#1 AGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATC 142 ************************************************************ consensus_6400#0 GGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAG 419 consensus_6400#1 GGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAG 202 ************************************************************ consensus_6400#0 AGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCA 479 consensus_6400#1 AGACTTCGCTATCGNATACAAGCATACAACAACCAAAAAAAACCGTGGGCAGATAGGCCA 262 ************** ****************** ************************** consensus_6400#0 ACAACAGAAACACTTAAACTTTACAC-ACCTGAA-ACACACATCCACACTAAACGAAA-A 536 consensus_6400#1 ACAACAGAAACNCTTAAACTTTACACGACCTGAAGACACAAATACACACTAAACGAAACA 322 *********** ************** ******* ***** ** ************** * consensus_6400#0 CACT-TCTCTGGGAGTGGG---AGATTAACGGCG-ATGCCGT-TGATCTATAAAACAC-- 588 consensus_6400#1 CACTCTCTCTGGGAGTNGGTNNNGATTNACGGCNGATGCCGTATGATCTATAAAACACCA 382 **** *********** ** **** ***** ******* *************** consensus_6400#0 -ATTCAC-ACTAAACA-TACAC-ACAC-ACAC-AACAAATACA--ATACACGTACACAGC 640 consensus_6400#1 CATTCACCACTAAACNATACACCACACCACACCAACNAATACACAGTACACGTACACAGC 442 ****** ******* ***** **** **** *** ****** ************** consensus_6400#0 AAACACT-CACCACAAACTTAGTGCTATCGT--ATTACTCTGTA-TCTCC----TGTTGT 692 consensus_6400#1 AAACACNTCACCACAAACTTAGTGCTATCGGTAATTNCTCTGTAATCTCCCTGGTATGNT 502 ****** ********************** *** ******* ***** * * * consensus_6400#0 TGAGTA-TCATTTTT----GCTAATACAGTTTT-----GTATCGCCCT---CGCCGCCCT 739 consensus_6400#1 CGAGTACTCACTNTGCNCAGCTAATACACGCCCAATGGNAGTCGNNCCTCGCGCCGGGCC 562 ***** *** * * ********* *** * ***** * consensus_6400#0 CCCTTCTTAGTCTAGATTTCGTCACGAA------ACAAACAAAAAGACGGTGAGGGGACA 793 consensus_6400#1 TCCCCTTTACTATACAGGTCCTCAAGAATATTTCGGNTTCCACAAAACACCAAANAACCA 622 ** *** * ** * ** *** *** * * ** ** * ** consensus_6400#0 GAGACCCCTGGTTCACC------------------------------------------- 810 consensus_6400#1 ACACAAACAGACACGANGGTAGAGAGGGGAACAAGGAAGACACACCCCCTGGGGTTTCCA 682 * * * consensus_6400#0 ------------------------------------------------------------ consensus_6400#1 CACCCTTAAAACGTTACCCCTANTACNGGTGAGGCNAANTATCGGCCCAAACTTGGCNGC 742 consensus_6400#0 -------------------------- consensus_6400#1 CGCTTCATCTAGGCCGGCGGCTACNC 768 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||