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Anopheles gambiae
cluster # 6400 cluster # 6400       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6400#0 length = 810 sequences # 4  
consensus_6400#1 length = 768 sequences # 1  

consensusID : consensus_6400#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 810
fasta sequence
                              [AATCTCTGAAAATTATCCGTGCATTTGAGTAAAAGGATCAGTGGAACGTAATGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAACAAGGAAAGTCAAAGTAATAGGATAGTATCTACGGGAGAGTGGCGTACGGTGAAGGACAAGCTGAGCTCTGTAAAAAAAAACAAAAACACATACACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGCCCTCGCCGCCCTCCCTTCTTAGTCTAGATTTCGTCACGAAACAAACAAAAAGACGGTGAGGGGACAGAGACCCCTGGTTCACC]

[+] EMBL BX617080             [AATCTCTGAAAATTATCCGTGCATTTGAGTAAAAGGATCAGTGGAACGTAATGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAACAAGGAAAGTCAAAGTAATAGGATAGTATCTACGGGAGAGTGGCGTACGGTGAAGGACAAGCTGAGCTCTGTAAAAAAAAACAAAAACACATACACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGC                                                                                   ]
[+] EMBL BX615183             [                                                                                                                                                                                GAGCTCTGTAAAAAAAAACAAAAACACTTTCACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGCCCTCGCCGCCCTCCCTTCTTAGTCTAGATTTCGTCACGAAACAAACAAAAAGACGGTGAGGGGACAGAGACCCCTGGTTCACC]
[+] EMBL BX613583             [                                                                                                                                                                                                    AAAACACATACACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGTGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATTCATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGATACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGCCCTCGC                                                                             ]
[+] EMBL BX614278             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAAAAAAAAACCGGGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGTGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATT                                                                                                           ]


>consensus_6400#0 AATCTCTGAAAATTATCCGTGCATTTGAGTAAAAGGATCAGTGGAACGTAATGCGGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAACAAGGAA AGTCAAAGTAATAGGATAGTATCTACGGGAGAGTGGCGTACGGTGAAGGACAAGCTGAGC TCTGTAAAAAAAAACAAAAACACATACACACATAATTATCAAACCTTGAACCAGACATTG GCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGGGAGGCAAAGATAGGGGATGAAA GGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCG GTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGA GACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAA CAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACT TCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAA CATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTA GTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTT GTATCGCCCTCGCCGCCCTCCCTTCTTAGTCTAGATTTCGTCACGAAACAAACAAAAAGA CGGTGAGGGGACAGAGACCCCTGGTTCACC



consensusID : consensus_6400#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 768
fasta sequence
                              [AGAATCCCCGCAGGTTACATTGGCTTTATTTCCTTCCTGGTAAAGGTTCTAATTGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGNATACAAGCATACAACAACCAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACNCTTAAACTTTACACGACCTGAAGACACAAATACACACTAAACGAAACACACTCTCTCTGGGAGTNGGTNNNGATTNACGGCNGATGCCGTATGATCTATAAAACACCACATTCACCACTAAACNATACACCACACCACACCAACNAATACACAGTACACGTACACAGCAAACACNTCACCACAAACTTAGTGCTATCGGTAATTNCTCTGTAATCTCCCTGGTATGNTCGAGTACTCACTNTGCNCAGCTAATACACGCCCAATGGNAGTCGNNCCTCGCGCCGGGCCTCCCCTTTACTATACAGGTCCTCAAGAATATTTCGGNTTCCACAAAACACCAAANAACCAACACAAACAGACACGANGGTAGAGAGGGGAACAAGGAAGACACACCCCCTGGGGTTTCCACACCCTTAAAACGTTACCCCTANTACNGGTGAGGCNAANTATCGGCCCAAACTTGGCNGCCGCTTCATCTAGGCCGGCGGCTACNC]

[+] EMBL AL692359             [AGAATCCCCGCAGGTTACATTGGCTTTATTTCCTTCCTGGTAAAGGTTCTAATTGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGNATACAAGCATACAACAACCAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACNCTTAAACTTTACACGACCTGAAGACACAAATACACACTAAACGAAACACACTCTCTCTGGGAGTNGGTNNNGATTNACGGCNGATGCCGTATGATCTATAAAACACCACATTCACCACTAAACNATACACCACACCACACCAACNAATACACAGTACACGTACACAGCAAACACNTCACCACAAACTTAGTGCTATCGGTAATTNCTCTGTAATCTCCCTGGTATGNTCGAGTACTCACTNTGCNCAGCTAATACACGCCCAATGGNAGTCGNNCCTCGCGCCGGGCCTCCCCTTTACTATACAGGTCCTCAAGAATATTTCGGNTTCCACAAAACACCAAANAACCAACACAAACAGACACGANGGTAGAGAGGGGAACAAGGAAGACACACCCCCTGGGGTTTCCACACCCTTAAAACGTTACCCCTANTACNGGTGAGGCNAANTATCGGCCCAAACTTGGCNGCCGCTTCATCTAGGCCGGCGGCTACNC]


>consensus_6400#1 AGAATCCCCGCAGGTTACATTGGCTTTATTTCCTTCCTGGTAAAGGTTCTAATTGAAGAG GGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATAT ACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAG CAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGNATACAAGCATACAACAACCAAAA AAAACCGTGGGCAGATAGGCCAACAACAGAAACNCTTAAACTTTACACGACCTGAAGACA CAAATACACACTAAACGAAACACACTCTCTCTGGGAGTNGGTNNNGATTNACGGCNGATG CCGTATGATCTATAAAACACCACATTCACCACTAAACNATACACCACACCACACCAACNA ATACACAGTACACGTACACAGCAAACACNTCACCACAAACTTAGTGCTATCGGTAATTNC TCTGTAATCTCCCTGGTATGNTCGAGTACTCACTNTGCNCAGCTAATACACGCCCAATGG NAGTCGNNCCTCGCGCCGGGCCTCCCCTTTACTATACAGGTCCTCAAGAATATTTCGGNT TCCACAAAACACCAAANAACCAACACAAACAGACACGANGGTAGAGAGGGGAACAAGGAA GACACACCCCCTGGGGTTTCCACACCCTTAAAACGTTACCCCTANTACNGGTGAGGCNAA NTATCGGCCCAAACTTGGCNGCCGCTTCATCTAGGCCGGCGGCTACNC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6400#0      AATCTCTGAAAATTATCCGTGCATTTGAGTAAAAGGATCAGTGGAACGTAATGCGGAGAG 60
consensus_6400#1      ------------------------------------------------------------
                                                                                  

consensus_6400#0      AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAACAAGGAA 120
consensus_6400#1      ------------------------------------------------------------
                                                                                  

consensus_6400#0      AGTCAAAGTAATAGGATAGTATCTACGGGAGAGTGGCGTACGGTGAAGGACAAGCTGAGC 180
consensus_6400#1      ------------------------------------------------------------
                                                                                  

consensus_6400#0      TCTGTAAAAAAAAACAAAAACACATACACACATAATTATCAAACCTTGAACCAGACATTG 240
consensus_6400#1      --------------------------------------AGAATCCCCGCAGGTTACATTG 22
                                                              ** **  * *    ******

consensus_6400#0      GCTTTAGTTTCCTTCCTGTAAAGGTTCTAAG-GAAGAGGGAGGCAAAGATAGGGGATGAA 299
consensus_6400#1      GCTTTATTTCCTTCCTGGTAAAGGTTCTAATTGAAGAGGGAGGCAAAGATAGGGGATGAA 82
                      ****** ** * * *  *************  ****************************

consensus_6400#0      AGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATC 359
consensus_6400#1      AGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATC 142
                      ************************************************************

consensus_6400#0      GGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAG 419
consensus_6400#1      GGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAG 202
                      ************************************************************

consensus_6400#0      AGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCA 479
consensus_6400#1      AGACTTCGCTATCGNATACAAGCATACAACAACCAAAAAAAACCGTGGGCAGATAGGCCA 262
                      ************** ****************** **************************

consensus_6400#0      ACAACAGAAACACTTAAACTTTACAC-ACCTGAA-ACACACATCCACACTAAACGAAA-A 536
consensus_6400#1      ACAACAGAAACNCTTAAACTTTACACGACCTGAAGACACAAATACACACTAAACGAAACA 322
                      *********** ************** ******* ***** ** ************** *

consensus_6400#0      CACT-TCTCTGGGAGTGGG---AGATTAACGGCG-ATGCCGT-TGATCTATAAAACAC-- 588
consensus_6400#1      CACTCTCTCTGGGAGTNGGTNNNGATTNACGGCNGATGCCGTATGATCTATAAAACACCA 382
                      **** *********** **    **** *****  ******* ***************  

consensus_6400#0      -ATTCAC-ACTAAACA-TACAC-ACAC-ACAC-AACAAATACA--ATACACGTACACAGC 640
consensus_6400#1      CATTCACCACTAAACNATACACCACACCACACCAACNAATACACAGTACACGTACACAGC 442
                       ****** *******  ***** **** **** *** ******   **************

consensus_6400#0      AAACACT-CACCACAAACTTAGTGCTATCGT--ATTACTCTGTA-TCTCC----TGTTGT 692
consensus_6400#1      AAACACNTCACCACAAACTTAGTGCTATCGGTAATTNCTCTGTAATCTCCCTGGTATGNT 502
                      ******  **********************   *** ******* *****    * *  *

consensus_6400#0      TGAGTA-TCATTTTT----GCTAATACAGTTTT-----GTATCGCCCT---CGCCGCCCT 739
consensus_6400#1      CGAGTACTCACTNTGCNCAGCTAATACACGCCCAATGGNAGTCGNNCCTCGCGCCGGGCC 562
                       ***** *** * *     *********             ***  *    *****  * 

consensus_6400#0      CCCTTCTTAGTCTAGATTTCGTCACGAA------ACAAACAAAAAGACGGTGAGGGGACA 793
consensus_6400#1      TCCCCTTTACTATACAGGTCCTCAAGAATATTTCGGNTTCCACAAAACACCAAANAACCA 622
                       **   *** * ** *  ** *** ***           * * ** **    *     **

consensus_6400#0      GAGACCCCTGGTTCACC------------------------------------------- 810
consensus_6400#1      ACACAAACAGACACGANGGTAGAGAGGGGAACAAGGAAGACACACCCCCTGGGGTTTCCA 682
                             * *   *                                              

consensus_6400#0      ------------------------------------------------------------
consensus_6400#1      CACCCTTAAAACGTTACCCCTANTACNGGTGAGGCNAANTATCGGCCCAAACTTGGCNGC 742
                                                                                  

consensus_6400#0      --------------------------
consensus_6400#1      CGCTTCATCTAGGCCGGCGGCTACNC 768
                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)