These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 834 fasta sequence [GGGTCTCACCGGTGCCCAAACGTCCATTGACCCTGCTGCACTGGAAGCGTCTGCCAGAGATGTATTGAATCTTGCAGCATCACGTACAATGGCAGTATTAGAACCTCTGAAGATTACTATACTTGATTATCCGCATGACGGGCCAATTCAACTATCAGTGCCCAATTTTCCAAACGTGCCGGAGAAAGGCGAGCACATGATTTGGTTCGATCGTGTTGTATATATAGAGCGAACCGATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAACCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAACCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTCACTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTGTTTTCAATCGTACCGTCACGCTTAAAGAAGATACTGGGTTAAAATATTTAGATTGACAAATCAAGCCCGTTTCAATCTTGCAGTCATTATGATACGATTGGAGCAAATATTAAACCAGTTATGGAGATGTTTGCATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGT] [+] EMBL BX617581 [GGGTCTCACCGGTGCCCAAACGTCCATTGACCCTGCTGCACTGGAAGCGTCTGCCAGAGATGTATTGAATCTTGCAGCATCACGTACAATGGCAGTATTAGAACCTCTGAAGATTACTATACTTGATTATCCGCATGACGGGCCAATTCAACTATCAGTGCCCAATTTTCCAAACGTGCCGGAGAAAGGCGAGCACATGATTTGGTTCGATCGTGTTGTATATATAGAGCGAACCGATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAACCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAACCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTCACAGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTGTTTTCAATCGTACCGTCACGCTTAAAGAAGATACTGGGTTAAAATATTTAGATTGACAAATC ] [+] EMBL BM590138 [ ccGAGCGAACCGATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAACCGGTTGGACTGAAATACATTGGTTCCATGCTTATAGTAAAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTATCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTCACTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTGTTTTCAATCGTACCGTCACGCTTAAAGAAGATACTGG ] [+] EMBL BX612310 [ ATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAGCCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAACCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTCACTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGT TTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTGTTTTCAATCGTACCGTCACGCTTAAAGAAGATACT GGTAAAAATATTTAGATTGACAAATCAAGCCCGTTTCAATCTTGCAGTCATTATGATACGATTGGAGCAAATATTAAACCAGTTATGGAGATGTTTGCATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGT] [+] EMBL BX616381 [ ACAGCCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTCGCTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGC ] consensusID : consensus_6409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [GAATCCCCCGAGGTTAATCGTGTTGTATATATAGAGCGATCCGATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAGCCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTTGCTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCAGCTTGTTTTCAATCGTACCGTCACGCTTAACAGAAGATACTGGTAACAACATATTTAGATTGACAAATCAAGCCCGTTTCAATCTTGCAGTTATGATACGATTGGAGCAAATATTAAACCAGTTATGGAGATGTTTGNATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGTTCGTGAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AL692333 [GAATCCCCCGAGGTTAATCGTGTTGTATATATAGAGCGATCCGATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAGCCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTTGCTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCAGCTTGTTTTCAATCGTACCGTCACGCTTAACAGAAGATACTGGTAACAACATATTTAGATTGACAAATCAAGCCCGTTTCAATCTTGCAGTTATGATACGATTGGAGCAAATATTAAACCAGTTATGGAGATGTTTGNATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGTTCGTGAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6409#0 GGGTCTCACCGGTGCCCAAACGTCCATTGACCCTGCTGCACTGGAAGCGTCTGCCAGAGA 60 consensus_6409#1 ------------------------------------------------------------ consensus_6409#0 TGTATTGAATCTTGCAGCATCACGTACAATGGCAGTATTAGAACCTCTGAAGATTACTAT 120 consensus_6409#1 ------------------------------------------------------------ consensus_6409#0 ACTTGATTATCCGCATGACGGGCCAATTCAACTATCAGTGCCCAATTTTCCAAACGTGCC 180 consensus_6409#1 ------------------------------------------------------------ consensus_6409#0 GGAGAAAGGCGAGCACATGATTTG-GTTCGATCGTGTTGTATATATAGAGCGAACCGATT 239 consensus_6409#1 --------------GAATCCCCCGAGGTTAATCGTGTTGTATATATAGAGCGATCCGATT 46 ** * * * *********************** ****** consensus_6409#0 TCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAACCGGTTGGACTGA 299 consensus_6409#1 TCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAGCCGGTTGGACTGA 106 ********************************************** ************* consensus_6409#0 AATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGG 359 consensus_6409#1 AATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGG 166 ************************************************************ consensus_6409#0 AACTAGTATGTCGCATAGAACCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACT 419 consensus_6409#1 AACTAGTATGTCGCATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACT 226 ******************* **************************************** consensus_6409#0 GGGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGA 479 consensus_6409#1 GGGTAGCTAAACC-TGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGA 285 ************* ********************************************** consensus_6409#0 ACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGA 539 consensus_6409#1 ACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGA 345 ************************************************************ consensus_6409#0 TTCGTTCACTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAAT 599 consensus_6409#1 TTCGTTTGCTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAAT 405 ****** **************************************************** consensus_6409#0 ATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTG 659 consensus_6409#1 ATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGC-AGCTTG 464 ***************************************************** ****** consensus_6409#0 TTTTCAATCGTACCGTCACGCTTAA-AGAAGATACTGG-GTTAAAATATTTAGATTGACA 717 consensus_6409#1 TTTTCAATCGTACCGTCACGCTTAACAGAAGATACTGGTAACAACATATTTAGATTGACA 524 ************************* ************ ** *************** consensus_6409#0 AATCAAGCCCGTTTCAATCTTGCAGTCATTATGATACGATTGGAGCAAATATTAAACCAG 777 consensus_6409#1 AATCAAGCCCGTTTCAATCTTGCAG---TTATGATACGATTGGAGCAAATATTAAACCAG 581 ************************* ******************************** consensus_6409#0 TTATGGAGATGTTTGCATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGT--- 834 consensus_6409#1 TTATGGAGATGTTTGNATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGTTCG 641 *************** ***************************************** consensus_6409#0 ----------------------- consensus_6409#1 TGAAAAAAAAAAAAAAAAAAAAA 664 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||