These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 840 fasta sequence [GAATTGCCATGANGTTGCTGGCAATGGGTACGANGTCTGGTTGAGTTTCCCTGCACTGTGCTGAAAGGCAAACCCGGCCTGTACGANTGCAATGTGCTGCAGCTGTGCTAGATCTTGCTGGTGCCACCTGGAAGCTGGTGCTCGTGCTGCCAAAAGCTGCCAATTCAATGTGTGTTCTGTGTGCTGTCCATGCTCTGAATGCTAATGCTAACTGCCTTCAAACCAGTATTACTGTGCCCTGAACTGGATTTTGGATGCTGATGCTGCTGTGCCAACTGCTGTGTGCTGCACATGTCCTTCTACAACCAGTNGCACCTGGTGTTGTGTTGTGTTTCTGGTGCATCTGGCANGCCAACTCCTGCCTCTGCAATGTGCTTCTCTGTGCCTGTGTCCTGTTGCTGGTATTCTCTGNGCTCCTGCTGGACAGTCCTGGTAGCCAGAGCTACAAGCTTCCCTGGCAACAAGNGACGTGAACCTGTCGCTACATGTGNGTGGATTTTCCGCTCGCCAACGCGCCAGCCCCAGCGCTATCGCAGCGGCAGCTCGCATCAGCTTCTCGCAAGCAAGTANACTANCAGCACACTACAGCGCCTGCAACGACGCACCAACNACACCACCGGCAACCAACCCGGCACACAACCGAAGCCCTGGGACCCAACTTGACCCTCCGCCGCGCCACTTANAAACCCTAACACGCTTGCACCCGCCGNCAACCAACGGCACACCCCNACTCACACCTTGCTCCTCCCGCCNCCCACACCTGGCGCACACCCTACCCCCNGCTTGCTCCTCCCCTGCCCCCTCCACCNACCCCCCCACACACCCACACACCANCCANAC] [+] EMBL AL931843 [GAATTGCCATGANGTTGCTGGCAATGGGTACGANGTCTGGTTGAGTTTCCCTGCACTGTGCTGAAAGGCAAACCCGGCCTGTACGANTGCAATGTGCTGCAGCTGTGCTAGATCTTGCTGGTGCCACCTGGAAGCTGGTGCTCGTGCTGCCAAAAGCTGCCAATTCAATGTGTGTTCTGTGTGCTGTCCATGCTCTGAATGCTAATGCTAACTGCCTTCAAACCAGTATTACTGTGCCCTGAACTGGATTTTGGATGCTGATGCTGCTGTGCCAACTGCTGTGTGCTGCACATGTCCTTCTACAACCAGTNGCACCTGGTGTTGTGTTGTGTTTCTGGTGCATCTGGCANGCCAACTCCTGCCTCTGCAATGTGCTTCTCTGTGCCTGTGTCCTGTTGCTGGTATTCTCTGNGCTCCTGCTGGACAGTCCTGGTAGCCAGAGCTACAAGCTTCCCTGGCAACAAGNGACGTGAACCTGTCGCTACATGTGNGTGGATTTTCCGCTCGCCAACGCGCCAGCCCCAGCGCTATCGCAGCGGCAGCTCGCATCAGCTTCTCGCAAGCAAGTANACTANCAGCACACTACAGCGCCTGCAACGACGCACCAACNACACCACCGGCAACCAACCCGGCACACAACCGAAGCCCTGGGACCCAACTTGACCCTCCGCCGCGCCACTTANAAACCCTAACACGCTTGCACCCGCCGNCAACCAACGGCACACCCCNACTCACACCTTGCTCCTCCCGCCNCCCACACCTGGCGCACACCCTACCCCCNGCTTGCTCCTCCCCTGCCCCCTCCACCNACCCCCCCACACACCCACACACCANCCANAC] consensusID : consensus_6414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 768 fasta sequence [CCGCCCACGCGTCCGAACGCGTGTGACCGGTAGTGTTAACAAATAATCCACCCTGTGTGTGTGAGTAAGCGATGAACAGATTCGTTGGCGTGATCATACTTTCGGCACTGGTGATCGGTGCCTTAGGTCAGAACGATGGCCGCGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCTTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTACGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAATGGGTTCGGTGCGTCCAGCTCGAATGCTAATGCTAACGCCTTCAACCAGTATTACGGCCCGAACGGATTTGGAGCGAGCGCGGCCAACGCGGGCGCACAGTCCTTCTACAACCAGGGACCGGGTGGTGGTTTCGGTGCATCGGCAGCCAACTCCGCCTCGCAAGGCTTCTCGGCCGGTCCGGGCGGTTTCTCTGGCTCCGCTGGACAGTCCGGTAGCCAGAGCTACAAGCTTCCCGGCAACAAGGACGTGAACCTGTCGTACAGTGGTGGATTTTCCGTCGCCAACGGCCAGCCCAGCGTATCGCAGGGCAGCTCGATCAGCTTCTCGAAGAAGTAGACTAGCAGCACACTACAGCGCTGAACGACGACAACAAACACGGCAACACGAAACGAGCGGACAATGACTCGGGATAGAACTAAGTGCACGCGAGAGGAACCTTAATGTCTCGGCAATGGAAATN] [+] EMBL BM590086 [CCGCCCACGCGTCCGAACGCGTGTGACCGGTAGTGTTAACAAATAATCCACCCTGTGTGTGTGAGTAAGCGATGAACAGATTCGTTGGCGTGATCATACTTTCGGCACTGGTGATCGGTGCCTTAGGTCAGAACGATGGCCGCGATGCTGAAGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCGTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTTCGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAATGGGTTCGGTGCGTCCAGCTCGAATGCTAATGCTAACGCCTTCAACCAGTATTACGGCCCGAACGGATTTGGGGCGAGCGCGGCCAACGCGGGCGCACAGTCCTTCTACAACCAGGGACCGGGTGGTGGTTTCGGTGCATCGGCAGCCAACTCCGCCTCGCAAGGCTTCTCGGCCGGTCCGGGCGGTTTCTCGGGCTCCGCTGGACAGTCCGGTAGCCAGAGCTACAAGCTTCCCGGCAACAAGGACGTGAACCTGTCGTACAGTGGTGGATTTTCCGTCGCCAACGG ] [+] EMBL BM654858 [ ccgGTGTGAGTGAACGATGAACAGATTCGTTGGAGTGATCATACTTTCGGCACTGGTGATCGGTGCCTTAGGTCAGAACGATGGCCGCGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCTTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTACGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAATGGGTTCGGTGCGTCCAGCTCGAATGCTAATGCTAACGCCTTCAACCAGTATTACGGCCCGAACGGATTTGGAGCGAGCGCGGCCAACGCGGGCGCACAGTCCTTCTACAACCAGGGACCGGGTGGTGGTTTCGGTGCATCGGCAGCCAACTCCGCCTCGCAAGGCTTCTCGGCCGGTCCGGGCGGTTTCTCTGGCTCCGCTGGACAGTCCGGTAGCCAGAGCTACAAGCTTCCCGGCAACAAGGACGTGAACCTGTCGTACAGTGGTGGATTTTCCGTCGCCAACGGCCAGCCCAGCGTATCGCAGGGCAGCTCGATCAGCTTCTCGAAGAAGTAGACTAGCAGCACACTACAGCGCTGAACGACGACAA ] [+] EMBL BX621242 [ AGAACGATGGCCGCGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCTTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTACGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAATGGGTTCGGTGCGTCCAGCTCGAATGCTAATGCTAACGCCTTCAACCAGTATTACGGCCCGAACGGATTTGGAGCGAGCGCGGCCAACGCGGGCGCACAGTCCTTCTACAACCAGGGACCGGGTGGTGGTTTCGGTGCATCGGCAGCCAACTCCGCCTCGCAAGGCTTCTCGGCCGGTCCGGGCGGTTTCTCTGGCTCCGCTGGACAGTCCGGTAGCCAGAGCTACAAGCTTCCCGGCAACAAGGACGTGAACCTGTCGTACAGTGGTGGATTTTCCGTCGCCAACGGCCAGCCCAGCGTATCGCAGGGCAGCTCGATCAGCTTCTCGAAGAAGTAGACTAGCAGCACACTACAGCGCTGAACGACGACAACAAACACGGCAACACGAAACGAGCGGACAATGACTCGGGATAGAACTAAGTGCACGCGAGAGGAACCTTAATGTCTCGGCAATGGAAATN] consensusID : consensus_6414#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [GAGTTACCCAAGTCGATTGAATTTTATTTGATTTTTGCGTTGATTTGGCCTTTTCCGAAGTGTGTGTAAATAAAACAAAACCCAACCAACTTGTTTGCATGTTTGAAGGATGTCGTAAGCAATCCACACCCTACCCTCTGAGCCAACGGGTCAGCGAAGATCATTACCATAACAGTGGAAGAGCCTTCCATTTTGTTGGTTTTTTTGCGCCTTTCCTTCCCTTTTCTTCAATTCGACTTAATTAAAGCTTAACATCTTCTTAACATCATCTCATTTTCAGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCTTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTACGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAAGTAAGCTCCCAAACCCACTCCAATGTGTACGTTTCTTTCTCCCCAAAAGAACTCCCCATTTTTACCGCTGACCTTGAGAGAGGGTGCTCCATCCGAATGAGGGTGGTGTCCGTTTGTTCATTGTGCATGCTGAT] [+] EMBL BX603085 [GAGTTACCCAAGTCGATTGAATTTTATTTGATTTTTGCGTTGATTTGGCCTTTTCCGAAGTGTGTGTAAATAAAACAAAACCCAACCAACTTGTTTGCATGTTTGAAGGATGTCGTAAGCAATCCACACCCTACCCTCTGAGCCAACGGGTCAGCGAAGATCATTACCATAACAGTGGAAGAGCCTTCCATTTTGTTGGTTTTTTTGCGCCTTTCCTTCCCTTTTCTTCAATTCGACTTAATTAAAGCTTAACATCTTCTTAACATCATCTCATTTTCAGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCTTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTACGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAAGTAAGCTCCCAAACCCACTCCAATGTGTACGTTTCTTTCTCCCCAAAAGAACTCCCCATTTTTACCGCTGACCTTGAGAGAGGGTGCTCCATCCGAATGAGGGTGGTGTCCGTTTGTTCATTGTGCATGCTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6414#0 ------------------------------------------------------------ consensus_6414#1 CCGCCCACGCGTCCGAACGCGTGTGACCGGTAGTGTTAACAAATAATCCACCCTGTGTGT 60 consensus_6414#2 ------------------------------------------------------------ consensus_6414#0 ------------------------------------------------------------ consensus_6414#1 GTGAGTAAGCGATGAACAGATTCGTTGGCGTGATCATACTTTCGGCACTGGTGATCGGTG 120 consensus_6414#2 ------------------------------------------------------------ consensus_6414#0 -----------------------------GAATTGCCATGANGTTGCTGGCAATGGGTAC 31 consensus_6414#1 CCTTAGGTCAGAACGATGGCCGCGATGCTGAGGTGAGA-GATCGCGCCGGCAATGGGTAC 179 consensus_6414#2 -----------------------------GAGTTACCC--AAGTCGATTGAATTTTATTT 29 ** * * * * * * * consensus_6414#0 GANGTC-----TGGTTGAGT-TTCCCTGCACTGTGCT----GAAAGGCAAACCCGGCCTG 81 consensus_6414#1 GAGGTCC----TGGTCGAGTCTTCCCTGCAC-GTGC-----GAAAGGCAAACCCGGCC-G 228 consensus_6414#2 GATTTTTGCGTTGATTTGGCCTTTTCCGAAGTGTGTGTAAATAAAACAAAACCCAACCAA 89 ** * ** * * ** * * * *** *** ****** ** consensus_6414#0 TACGANTGCAATGTGCTGCAGCTGTGCTAGATCTTGCTGGTGCCACCT-GGAAGCTGGTG 140 consensus_6414#1 TACGAC-GCAACGTGC-GCAGC-GTGCTAGATCT-GCTGGTGCCACC--GGAAGC-GGTG 281 consensus_6414#2 CTTGTTTGCA-TGTTTGAAGGATGTCGTAAGCAATCCACACCCTACCCTCTGAGCCAACG 148 * *** ** * ** ** * * *** *** * consensus_6414#0 CTCGTGCTGCCAAAAGCTGCCAATTCAATGTGTGTTCTGTGTGCTGTCCATGCTCT-GAA 199 consensus_6414#1 CTCGTGC-GCCAAAAGC-GCCAATTCAATGGGT--TCGGTGCG---TCCA-GCTC--GAA 331 consensus_6414#2 GGTCAGC-GAAGATCATTACCATAACAGTGGAAGAGCCTTCCATTTTGTTGGTTTTTTTG 207 ** * * *** ** ** * * * * * consensus_6414#0 TGCTAATGCTAACT--GCCTTCAAACCAGTATTACTGTGCCCTGAACTGGATTTTGGATG 257 consensus_6414#1 TGCTAATGCTAAC---GCCTTCAA-CCAGTATTAC---GGCCCGAAC-GGATTTGGAGCG 383 consensus_6414#2 CGCCTTTCCTTCCCTTTTCTTCAATTCGACTTAATTAAAGCTTAACATCTTCTTAACATC 267 ** * ** * ****** * * * * * ** consensus_6414#0 CTGATGCTGCTGTGCCAACTGCTGTGTGCTGCACATGTCCTTCTACAACCAGTNGCACCT 317 consensus_6414#1 AGCGCG-------GCCAAC----GCGGGC-GCACA-GTCCTTCTACAACCAGGG--ACCG 428 consensus_6414#2 ATCTCATT----TTCAGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCT 323 * * * * * ** * * * ** consensus_6414#0 GGTGTTGTGTTGTGTTTCTGGTGCATCTGGCANGCCAACTCCTGCCTCTGCAATGTGCTT 377 consensus_6414#1 GGTG-------GTGGTTTCGGTGCATC-GGCAG-CCAACTCC-GCCTC-GCAAG--GCTT 475 consensus_6414#2 GGTCGA-----GTCTTCCCTGCACGTGCGAAAGGCAAACCCG-GCCGT-ACGAC--GCAA 374 *** ** * * * * * * * *** * *** * * ** consensus_6414#0 CTCTGTGCCTGTGTCCTGTTGCTGGTATTCTCTGNGCTCCTGCTGGACAGTCCTGGTAGC 437 consensus_6414#1 CTCGG----------CCGGTCCGGGCGGTTTCTCTGGCTCCGCTGGACAGTCC-GGTAGC 524 consensus_6414#2 CGTG-----------CGCAGCGTGCTAGATCTGCTGGTGCCACCGGA-AGCGGTGCTCGT 422 * * * * * * *** ** * * * consensus_6414#0 CAGAGCTACAAGCTTCCCTGGCAACAAGNGACGTGAACCTGTCGCTACATGTGNGTGGAT 497 consensus_6414#1 CAGAGCTACAAGCTTCCC-GGCAACAAGG-ACGTGAACCTGTCG-TACA-GTGG-TGGAT 579 consensus_6414#2 --GCGCCAAAAGCGCCAATTCAAGTAAGC-TCCCAAACC---CACTCCA-ATGTGTACGT 475 * ** * **** * * *** * **** * * ** ** * * consensus_6414#0 TTTCCGCTCGCCAACGCGCCAGCCCCAGCGCTATCGCAGCGGCAGCTCGCATCAGCTTCT 557 consensus_6414#1 TTTCCG-TCGCCAACG-GCCAGCCC-AGCG-TATCGCAG-GGCAGCTCG-ATCAGCTTCT 633 consensus_6414#2 TTCTTTCTCCCCAAAAGAACTCCCC-ATTTTTACCGCTGACCTTGAGAGAGGGTGCTCCA 534 ** ** **** * *** * ** *** * * * *** * consensus_6414#0 CGCAAGCAAGTANACTANCAGCACACTACAGCGCCTGCAACGACGCACCAACNACACCAC 617 consensus_6414#1 CGAAG--AAGTAGACTAGCAGCACACTACAGCGCTG--AACGACG-----ACAACAAACA 684 consensus_6414#2 TCCGAATGAGGGTGGTGTCCGTTTGTT-CATTGTGCATGCTGAT---------------- 577 ** * * * * ** * ** consensus_6414#0 CGGCAACCAACCCGGCACACAACCGAAGCCCTGGGACCCAACTTGACCCTCCGCCGCGCC 677 consensus_6414#1 CGGCAAC--ACGAAACGAGCGGACAATGACTCGGGATAGAACTAAGTGC------ACGCG 736 consensus_6414#2 ------------------------------------------------------------ consensus_6414#0 ACTTANAAACCCTAACACGCTTGCACCCGCCGNCAACCAACGGCACACCCCNACTCACAC 737 consensus_6414#1 AG--AGGAACCTTAATGTCTCGGCAATGGAAATN-------------------------- 768 consensus_6414#2 ------------------------------------------------------------ consensus_6414#0 CTTGCTCCTCCCGCCNCCCACACCTGGCGCACACCCTACCCCCNGCTTGCTCCTCCCCTG 797 consensus_6414#1 ------------------------------------------------------------ consensus_6414#2 ------------------------------------------------------------ consensus_6414#0 CCCCCTCCACCNACCCCCCCACACACCCACACACCANCCANAC 840 consensus_6414#1 ------------------------------------------- consensus_6414#2 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||