These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6416#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1452 fasta sequence [TCGTCCTCCTCCTCCATGTCCTCGTCGTCCTCCTCCTCCTTCAGCAGCCCCGACAGCCCCCTGTCGCTGGTGATGAAGAAACCGTACCACGACGAGGACGAGGACCACGAGATGAAGCACGACGACGACGGCAAACCGTGGCGCCCATGGTAAATGTGTTTCGTGTGTGATCGTGTGTGATCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGATGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACCCATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGATTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTTTTTGTGTGTGTGTATAAAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGGGTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGAAGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAACGTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAACTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACACGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTTAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTTCCCCCCTTTTTTTGGCGACAAAAATCACTAACGTCTTCCAGCGCGTAGTAAAAATGTGAAAACACATTGGCGCATAGGCGAAAAGGCGCAACAAAATCGCACACATATACACAAAAGGATACATACAAACTCCCGCCATTCGTGCCAAGCGATGTGTGGTAGCAAAGTCTTCCAAAAACCTTCCCCTGCGAGCACAATTACTATTGTGCTGAAGCAACAACTGCTGTACACAATTTGTCTGGCACACTGTGTTTGTCGTGAGATTGTATTGTGTGCCTGTTTTTGTGCGTGATCGTGCGCCTTTGCCTTAGTGCTGATCGTGCTTTTTGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGACGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATTATTGCTCACAACCTCACGTCTTTTGTTGAGTTCAGTAGGGGACAGTAGGTGAGAAAAAAGAAACACAAGAAAGGAGCTTATGTAAGACACAAAGAGTGAGGAAAAACAGTAAGCAAATCTGTAGGGAAAGGAAAAAGCAGGAGTGAAAGAGCAGAGCTAAAAATTGTACATACATTATATAGAGGTTAATATAAACCTAGCCTG] [+] EMBL BX607618 [TCGTCCTCCTCCTCCATGTCCTCGTCGTCCTCCTCCTCCTTCAGCAGCCCCGACAGCCCCCTGTCGCTGGTGATGAAGAAACCGTACCACGACGAGGACGAGGACCACGAGATGAAGCACGACGACGACGGCAAACCGTGGCGCCCATGGTAAATGTGTTTCGTGTGTGATCGTGTGTGATCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGATGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACCCATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGATTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTTTTTGTGTGTGTGTATAAAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGGGTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGAAGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAACGTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAACTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACACGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTTAGTTTTAGGAATTGT ] [+] EMBL BX624390 [ GTGTGATCGTGTGTGATCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGATGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACCCATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGATTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTGTTTGTGTGTGTGTATAAAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGGGTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGAAGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAACGTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAACTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACACGGATTATTACCTTCTCCTCGCCATAGTTTCAGGNGTGTTTTTTGNTGTC ] [+] EMBL AGA283511 [ TTTTTGTTGTCTCTCCCGGCCGCAAGGTTTAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTTCCCCCCTTTTTTTGGCGACAAAAATCACTAACGTCTTCCAGCGCGTAGTAAAAATGTGAAAACACATTGGCGCATAGGCGAAAAGGCGCAACAAAATCGCACACATATACACAAAAGGATACATACAAACTCCCGCCATTCGTGCCAAGCGATGTGTGGTAGCAAAGTCTTCCAAAAACCTTCCCCTGCGAGCACAATTACTATTGTGCTGAAGCAACAACTGCTGTACACAATTTGTCTGGCACACTGTGTTTGTCGTGAGATTGTATTGTGTGCCTGTTTTTGTGCGTGATCGTGCGCCTTTGCCTTAGTGCTGATCGTGCTTTTTGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGACGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATTATTGCTCACAACCTCACGTCTTTTGTTGAGTTCAGTA ] [-] EMBL AGA284804 [ CGTGAGATTGTATTGTGTACCTGTTTTTGTGCGTGATCGTGCGCCTTTGCCTTAGTGCTGATCGTGCTTTATGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGACGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATTATTGCTCACAACCTCACGTCTTTTGTTGAGTTCAGTAGGGGACAGTAGGTGAGAAAAAAGAAACACAAGAAAGGAGCTTATGTAAGACACAAAGAGTGAGGAAAAACAGTAAGCAAATCTGTAGGGAAAGGAAAAAGCAGGAGTGAAAGAGCAGAGCTAAAAATTGTACATACATTATATAGAGGTTAATATAAACCTAGCCTG] consensusID : consensus_6416#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [AGGGGAACACACTTCGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTGTGAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTNTCCCCCCTTTTNTNNCGNGCNGCNACNACACCACNATNCNACNTCANANCNGNTNCNNNTAACNCAANGCNCNGANCNGNTTAAANNNTNAAAAAAAAAAAANTTGGGTTNGGAAAAAAAACCCACCCATTTTNGNGNCCGCCCATNAGGGNCGNAAAAGGCGCAACAAAATCGCACACATAATACACAAAAGGATACATACAAACTNCNCCGCCCAATNTCGTGGGCCCAAAGGCCGGATTGNTTGNTNNGGGGTTAAAGCCCAAAAAAAAGTTTCACTTANNNACNANNAAAANANAACAAANCCACNTNTNCACNCCCCCCCNTNCGCCCNNCNAACNCCAACCAAAANTCCAACNTCATCCCGTTGCTCGAACCCAACCACCCGCCTCGTAACACCATTCGTCTGGGCCCACCTGTG] [+] EMBL BX619442 [AGGGGAACACACTTCGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTGTGAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTNTCCCCCCTTTTNTNNCGNGCNGCNACNACACCACNATNCNACNTCANANCNGNTNCNNNTAACNCAANGCNCNGANCNGNTTAAANNNTNAAAAAAAAAAAANTTGGGTTNGGAAAAAAAACCCACCCATTTTNGNGNCCGCCCATNAGGGNCGNAAAAGGCGCAACAAAATCGCACACATAATACACAAAAGGATACATACAAACTNCNCCGCCCAATNTCGTGGGCCCAAAGGCCGGATTGNTTGNTNNGGGGTTAAAGCCCAAAAAAAAGTTTCACTTANNNACNANNAAAANANAACAAANCCACNTNTNCACNCCCCCCCNTNCGCCCNNCNAACNCCAACCAAAANTCCAACNTCATCCCGTTGCTCGAACCCAACCACCCGCCTCGTAACACCATTCGTCTGGGCCCACCTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6416#0 TCGTCCTCCTCCTCCATGTCCTCGTCGTCCTCCTCCTCCTTCAGCAGCCCCGACAGCCCC 60 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 CTGTCGCTGGTGATGAAGAAACCGTACCACGACGAGGACGAGGACCACGAGATGAAGCAC 120 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 GACGACGACGGCAAACCGTGGCGCCCATGGTAAATGTGTTTCGTGTGTGATCGTGTGTGA 180 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 TCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGA 240 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 TGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACC 300 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 CATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGA 360 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 TTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTTTTTGTGTGTGTGTATA 420 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 AAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGG 480 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 GTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGA 540 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 AGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAAC 600 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 GTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAA 660 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 CTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACA-CGGATTAT 719 consensus_6416#1 --------------------------------------AGGGGAACACACTTCGGATTAT 22 ************ ******** consensus_6416#0 TACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTT 779 consensus_6416#1 TACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTT 82 ************************************************************ consensus_6416#0 T--AGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTTCCCCCCT 837 consensus_6416#1 GTGAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTNTCCCCCC 142 ************************************************* ***** consensus_6416#0 TTTTTTGGCGACAAAAATCACTAACGTCTTCCAGCGCGTAGTAAAAATGTGAAAACACAT 897 consensus_6416#1 TTTTNTNNCGNGCNGCNACNACACCACNATNCNACNTCANANCNGNTNCNNNTAACNCAA 202 **** * ** * * * * * * *** ** consensus_6416#0 TG-GCGCATAGGCGAAAAGGCGCAACAAAATCGCACACATATACACAAAAGGATACATAC 956 consensus_6416#1 NGCNCNGANCNGNTTAAANNNTNAAAAAAAAAAAANTTGGGTTNGGAAAAAAA-ACCCAC 261 * * * * *** ** **** * * **** * ** ** consensus_6416#0 AAACTCCCGCCATTCGTGCCAAGCGATGTGTGGTAGCAAAGTCTTCCAAAAACCTTCCCC 1016 consensus_6416#1 CCATT-------TTNGNGNCCGCCCATNAGGGNCGNAAAAGGCGCAACAAAATC------ 308 * * ** * * * * ** * * **** * **** * consensus_6416#0 TGCGAGCACAATTACTATTGTGCTGAAGCAACAACTGCTGTACACAATTTGTCTGGCACA 1076 consensus_6416#1 -GCACACATAATACACAAAAGGATACA-TACAAACTNCNCCGCCCAATNTCGTGGGCCCA 366 ** ** *** * * * * * **** * * **** * *** ** consensus_6416#0 CTGTGTTTGTCGTGAGATTGTATTGTGTGCCTGTTTTTGTGCGTGATCGTGCGCCTTTGC 1136 consensus_6416#1 AAG--------GCCGGATTGNTTGNTNNG---GGGTTAAAGCCCAAAAAAAAGT-TTCAC 414 * * ***** * * * * ** ** * * ** * consensus_6416#0 CTTAGTGCTGATCGTGCTTTTTGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGA 1196 consensus_6416#1 TTANNNACNANNAAAANANAACAAANCCACNTNTNCACNCCCCCCCNTN----------- 463 * * * * * * * * * * consensus_6416#0 CGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATT--ATTGCT 1254 consensus_6416#1 CGCCCNNCNAACN--CCAACCAAAANTCCAACNTCATCCCGTTGCTCGAACCCAACCACC 521 ** * ** * ** ** * *** * * * * * * ** * * consensus_6416#0 CACAACCTCACGTCTTTTGT-TGAGTTCAGTAGGGGACAGTAGGTGAGAAAAAAGAAACA 1313 consensus_6416#1 CGCCTCGTAACACCATTCGTCTGGGCCCACCTGTG------------------------- 556 * * * * ** * ** ** ** * ** * * consensus_6416#0 CAAGAAAGGAGCTTATGTAAGACACAAAGAGTGAGGAAAAACAGTAAGCAAATCTGTAGG 1373 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 GAAAGGAAAAAGCAGGAGTGAAAGAGCAGAGCTAAAAATTGTACATACATTATATAGAGG 1433 consensus_6416#1 ------------------------------------------------------------ consensus_6416#0 TTAATATAAACCTAGCCTG 1452 consensus_6416#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||