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Anopheles gambiae
cluster # 6416 cluster # 6416       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6416#0 length = 1452 sequences # 4  
consensus_6416#1 length = 556 sequences # 1  

consensusID : consensus_6416#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1452
fasta sequence
                              [TCGTCCTCCTCCTCCATGTCCTCGTCGTCCTCCTCCTCCTTCAGCAGCCCCGACAGCCCCCTGTCGCTGGTGATGAAGAAACCGTACCACGACGAGGACGAGGACCACGAGATGAAGCACGACGACGACGGCAAACCGTGGCGCCCATGGTAAATGTGTTTCGTGTGTGATCGTGTGTGATCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGATGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACCCATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGATTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTTTTTGTGTGTGTGTATAAAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGGGTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGAAGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAACGTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAACTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACACGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTTAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTTCCCCCCTTTTTTTGGCGACAAAAATCACTAACGTCTTCCAGCGCGTAGTAAAAATGTGAAAACACATTGGCGCATAGGCGAAAAGGCGCAACAAAATCGCACACATATACACAAAAGGATACATACAAACTCCCGCCATTCGTGCCAAGCGATGTGTGGTAGCAAAGTCTTCCAAAAACCTTCCCCTGCGAGCACAATTACTATTGTGCTGAAGCAACAACTGCTGTACACAATTTGTCTGGCACACTGTGTTTGTCGTGAGATTGTATTGTGTGCCTGTTTTTGTGCGTGATCGTGCGCCTTTGCCTTAGTGCTGATCGTGCTTTTTGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGACGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATTATTGCTCACAACCTCACGTCTTTTGTTGAGTTCAGTAGGGGACAGTAGGTGAGAAAAAAGAAACACAAGAAAGGAGCTTATGTAAGACACAAAGAGTGAGGAAAAACAGTAAGCAAATCTGTAGGGAAAGGAAAAAGCAGGAGTGAAAGAGCAGAGCTAAAAATTGTACATACATTATATAGAGGTTAATATAAACCTAGCCTG]

[+] EMBL BX607618             [TCGTCCTCCTCCTCCATGTCCTCGTCGTCCTCCTCCTCCTTCAGCAGCCCCGACAGCCCCCTGTCGCTGGTGATGAAGAAACCGTACCACGACGAGGACGAGGACCACGAGATGAAGCACGACGACGACGGCAAACCGTGGCGCCCATGGTAAATGTGTTTCGTGTGTGATCGTGTGTGATCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGATGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACCCATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGATTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTTTTTGTGTGTGTGTATAAAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGGGTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGAAGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAACGTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAACTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACACGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTTAGTTTTAGGAATTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX624390             [                                                                                                                                                                    GTGTGATCGTGTGTGATCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGATGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACCCATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGATTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTGTTTGTGTGTGTGTATAAAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGGGTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGAAGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAACGTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAACTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACACGGATTATTACCTTCTCCTCGCCATAGTTTCAGGNGTGTTTTTTGNTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AGA283511            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTTGTTGTCTCTCCCGGCCGCAAGGTTTAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTTCCCCCCTTTTTTTGGCGACAAAAATCACTAACGTCTTCCAGCGCGTAGTAAAAATGTGAAAACACATTGGCGCATAGGCGAAAAGGCGCAACAAAATCGCACACATATACACAAAAGGATACATACAAACTCCCGCCATTCGTGCCAAGCGATGTGTGGTAGCAAAGTCTTCCAAAAACCTTCCCCTGCGAGCACAATTACTATTGTGCTGAAGCAACAACTGCTGTACACAATTTGTCTGGCACACTGTGTTTGTCGTGAGATTGTATTGTGTGCCTGTTTTTGTGCGTGATCGTGCGCCTTTGCCTTAGTGCTGATCGTGCTTTTTGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGACGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATTATTGCTCACAACCTCACGTCTTTTGTTGAGTTCAGTA                                                                                                                                                                       ]
[-] EMBL AGA284804            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGTGAGATTGTATTGTGTACCTGTTTTTGTGCGTGATCGTGCGCCTTTGCCTTAGTGCTGATCGTGCTTTATGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGACGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATTATTGCTCACAACCTCACGTCTTTTGTTGAGTTCAGTAGGGGACAGTAGGTGAGAAAAAAGAAACACAAGAAAGGAGCTTATGTAAGACACAAAGAGTGAGGAAAAACAGTAAGCAAATCTGTAGGGAAAGGAAAAAGCAGGAGTGAAAGAGCAGAGCTAAAAATTGTACATACATTATATAGAGGTTAATATAAACCTAGCCTG]


>consensus_6416#0 TCGTCCTCCTCCTCCATGTCCTCGTCGTCCTCCTCCTCCTTCAGCAGCCCCGACAGCCCC CTGTCGCTGGTGATGAAGAAACCGTACCACGACGAGGACGAGGACCACGAGATGAAGCAC GACGACGACGGCAAACCGTGGCGCCCATGGTAAATGTGTTTCGTGTGTGATCGTGTGTGA TCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGA TGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACC CATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGA TTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTTTTTGTGTGTGTGTATA AAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGG GTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGA AGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAAC GTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAA CTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACACGGATTATT ACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTT AGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTTCCCCCCTTTT TTTGGCGACAAAAATCACTAACGTCTTCCAGCGCGTAGTAAAAATGTGAAAACACATTGG CGCATAGGCGAAAAGGCGCAACAAAATCGCACACATATACACAAAAGGATACATACAAAC TCCCGCCATTCGTGCCAAGCGATGTGTGGTAGCAAAGTCTTCCAAAAACCTTCCCCTGCG AGCACAATTACTATTGTGCTGAAGCAACAACTGCTGTACACAATTTGTCTGGCACACTGT GTTTGTCGTGAGATTGTATTGTGTGCCTGTTTTTGTGCGTGATCGTGCGCCTTTGCCTTA GTGCTGATCGTGCTTTTTGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGACGTT CTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATTATTGCTCACAAC CTCACGTCTTTTGTTGAGTTCAGTAGGGGACAGTAGGTGAGAAAAAAGAAACACAAGAAA GGAGCTTATGTAAGACACAAAGAGTGAGGAAAAACAGTAAGCAAATCTGTAGGGAAAGGA AAAAGCAGGAGTGAAAGAGCAGAGCTAAAAATTGTACATACATTATATAGAGGTTAATAT AAACCTAGCCTG



consensusID : consensus_6416#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence
                              [AGGGGAACACACTTCGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTGTGAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTNTCCCCCCTTTTNTNNCGNGCNGCNACNACACCACNATNCNACNTCANANCNGNTNCNNNTAACNCAANGCNCNGANCNGNTTAAANNNTNAAAAAAAAAAAANTTGGGTTNGGAAAAAAAACCCACCCATTTTNGNGNCCGCCCATNAGGGNCGNAAAAGGCGCAACAAAATCGCACACATAATACACAAAAGGATACATACAAACTNCNCCGCCCAATNTCGTGGGCCCAAAGGCCGGATTGNTTGNTNNGGGGTTAAAGCCCAAAAAAAAGTTTCACTTANNNACNANNAAAANANAACAAANCCACNTNTNCACNCCCCCCCNTNCGCCCNNCNAACNCCAACCAAAANTCCAACNTCATCCCGTTGCTCGAACCCAACCACCCGCCTCGTAACACCATTCGTCTGGGCCCACCTGTG]

[+] EMBL BX619442             [AGGGGAACACACTTCGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTGTGAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTNTCCCCCCTTTTNTNNCGNGCNGCNACNACACCACNATNCNACNTCANANCNGNTNCNNNTAACNCAANGCNCNGANCNGNTTAAANNNTNAAAAAAAAAAAANTTGGGTTNGGAAAAAAAACCCACCCATTTTNGNGNCCGCCCATNAGGGNCGNAAAAGGCGCAACAAAATCGCACACATAATACACAAAAGGATACATACAAACTNCNCCGCCCAATNTCGTGGGCCCAAAGGCCGGATTGNTTGNTNNGGGGTTAAAGCCCAAAAAAAAGTTTCACTTANNNACNANNAAAANANAACAAANCCACNTNTNCACNCCCCCCCNTNCGCCCNNCNAACNCCAACCAAAANTCCAACNTCATCCCGTTGCTCGAACCCAACCACCCGCCTCGTAACACCATTCGTCTGGGCCCACCTGTG]


>consensus_6416#1 AGGGGAACACACTTCGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGT TGTCTCTCCCGGCCGCAAGGTTGTGAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAA AAGTTAATTTAGTTNTCCCCCCTTTTNTNNCGNGCNGCNACNACACCACNATNCNACNTC ANANCNGNTNCNNNTAACNCAANGCNCNGANCNGNTTAAANNNTNAAAAAAAAAAAANTT GGGTTNGGAAAAAAAACCCACCCATTTTNGNGNCCGCCCATNAGGGNCGNAAAAGGCGCA ACAAAATCGCACACATAATACACAAAAGGATACATACAAACTNCNCCGCCCAATNTCGTG GGCCCAAAGGCCGGATTGNTTGNTNNGGGGTTAAAGCCCAAAAAAAAGTTTCACTTANNN ACNANNAAAANANAACAAANCCACNTNTNCACNCCCCCCCNTNCGCCCNNCNAACNCCAA CCAAAANTCCAACNTCATCCCGTTGCTCGAACCCAACCACCCGCCTCGTAACACCATTCG TCTGGGCCCACCTGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6416#0      TCGTCCTCCTCCTCCATGTCCTCGTCGTCCTCCTCCTCCTTCAGCAGCCCCGACAGCCCC 60
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      CTGTCGCTGGTGATGAAGAAACCGTACCACGACGAGGACGAGGACCACGAGATGAAGCAC 120
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      GACGACGACGGCAAACCGTGGCGCCCATGGTAAATGTGTTTCGTGTGTGATCGTGTGTGA 180
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      TCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGA 240
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      TGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACC 300
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      CATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGA 360
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      TTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTTTTTGTGTGTGTGTATA 420
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      AAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGG 480
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      GTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGA 540
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      AGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAAC 600
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      GTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAA 660
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      CTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACA-CGGATTAT 719
consensus_6416#1      --------------------------------------AGGGGAACACACTTCGGATTAT 22
                                                            ************  ********

consensus_6416#0      TACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTT 779
consensus_6416#1      TACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTT 82
                      ************************************************************

consensus_6416#0      T--AGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTTCCCCCCT 837
consensus_6416#1      GTGAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTNTCCCCCC 142
                         *************************************************  ***** 

consensus_6416#0      TTTTTTGGCGACAAAAATCACTAACGTCTTCCAGCGCGTAGTAAAAATGTGAAAACACAT 897
consensus_6416#1      TTTTNTNNCGNGCNGCNACNACACCACNATNCNACNTCANANCNGNTNCNNNTAACNCAA 202
                      **** *  **        *   * *    * *  *                  *** ** 

consensus_6416#0      TG-GCGCATAGGCGAAAAGGCGCAACAAAATCGCACACATATACACAAAAGGATACATAC 956
consensus_6416#1      NGCNCNGANCNGNTTAAANNNTNAAAAAAAAAAAANTTGGGTTNGGAAAAAAA-ACCCAC 261
                       *  *  *   *   ***     ** ****    *      *    ****  * **  **

consensus_6416#0      AAACTCCCGCCATTCGTGCCAAGCGATGTGTGGTAGCAAAGTCTTCCAAAAACCTTCCCC 1016
consensus_6416#1      CCATT-------TTNGNGNCCGCCCATNAGGGNCGNAAAAGGCGCAACAAAATC------ 308
                        * *       ** * * *   * **  * *     **** *     **** *      

consensus_6416#0      TGCGAGCACAATTACTATTGTGCTGAAGCAACAACTGCTGTACACAATTTGTCTGGCACA 1076
consensus_6416#1      -GCACACATAATACACAAAAGGATACA-TACAAACTNCNCCGCCCAATNTCGTGGGCCCA 366
                       **   ** ***    *    * *  *  *  **** *    * **** *    *** **

consensus_6416#0      CTGTGTTTGTCGTGAGATTGTATTGTGTGCCTGTTTTTGTGCGTGATCGTGCGCCTTTGC 1136
consensus_6416#1      AAG--------GCCGGATTGNTTGNTNNG---GGGTTAAAGCCCAAAAAAAAGT-TTCAC 414
                        *        *   *****  *  *  *   *  **   **   *      *  **  *

consensus_6416#0      CTTAGTGCTGATCGTGCTTTTTGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGA 1196
consensus_6416#1      TTANNNACNANNAAAANANAACAAANCCACNTNTNCACNCCCCCCCNTN----------- 463
                       *     *                  *    * * * *  * * *               

consensus_6416#0      CGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATT--ATTGCT 1254
consensus_6416#1      CGCCCNNCNAACN--CCAACCAAAANTCCAACNTCATCCCGTTGCTCGAACCCAACCACC 521
                      **  *    **    * **   **  *  *** * *  *  * * *  **    *   * 

consensus_6416#0      CACAACCTCACGTCTTTTGT-TGAGTTCAGTAGGGGACAGTAGGTGAGAAAAAAGAAACA 1313
consensus_6416#1      CGCCTCGTAACACCATTCGTCTGGGCCCACCTGTG------------------------- 556
                      * *  * * **  * ** ** ** *  **   * *                         

consensus_6416#0      CAAGAAAGGAGCTTATGTAAGACACAAAGAGTGAGGAAAAACAGTAAGCAAATCTGTAGG 1373
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      GAAAGGAAAAAGCAGGAGTGAAAGAGCAGAGCTAAAAATTGTACATACATTATATAGAGG 1433
consensus_6416#1      ------------------------------------------------------------
                                                                                  

consensus_6416#0      TTAATATAAACCTAGCCTG 1452
consensus_6416#1      -------------------
                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)