|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1172 fasta sequence
[CTGTTTGAGTTTGCAACTGATTGAAGACGAAAAAAAAAACAAATGCAAATCGCCAGTGTGAGTGAGTGTACAAAATAAAAGAAAAGAAAATTAACAACCAAGCGCGCCTATCAGCCAACGATGCGATGGTGAGTGGGGTGAAAAAAGTGAGAAAAGTGTTATGAATTTGTATCGTCGGAGGAAAAATGTTCCCTTCTCCCGCCCGCAATCAACGAGTGAGATTTGTTTGCGCATTGTTGTTCAACATTAATCAGCGCAATTCACCGAACGCCAGCAGTTGGCCATGAGTGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAG-CGAGAAAGCATAGCAGCAGCAGCACTAGCAGCACGTGTTACTGAAGAAGGTGTTAACGGATTGGCGTCCCTTGTACCGTGCTACACATCCTTGCCCTGTTTGTGTGTATTTTCCGTGAAAAGAAAAGAAAAGGAAAATTTAGAAGGCAATGTTTTAAGCATGTGGACAATTGTTTATTGGACTGTAAAACCCTGTATGTCATCGGAATGTTTGACTCGATGAAGTTATCGCAATCAGAATGGATTCTGGATTTAGGACTGAGACATCATCTGGCATGTGATGAAGAATTGTATCACAAAATAACATAGAAAAACTAAAAACTACACAGCACAAAAGTAAGAAACGGAAGTAGATTTCAACCCAGATCGTATCACAATGCTCTTAACATGGAAGGAATATTTCCATTTTGCTCCGACAAAAACGAACTAGCATTGCGATAGAATTTACAAAGAAAGCATCAGCAACCTACCCAACCGGAACAATGTACACCGGAAAGGCGAAAATATAATGATGTAAATGCAACGCGGTGTATCAAAAGGTGCAAAATACTGCAATGAAAGCACTTGCAGTTATGCCACCTGATCCACACCCACAGCACAAGGAGCGTCACCTTCGACAACGAGACATCAAACAAGCGCAGCTAATAATTCGATCCCTTTATCCAACGAGCCAATTATTTGTGCAGGGATAGGAAGGAAAAATCAGAAAAAGGTATGTCGCCACTCGCTCGGTGTATTCATCGTTAAAAATCGATCTGGATTTAACGGGACGGGACTGCTAACTTGACTCGAATAAAAGACTCGTCCCAG]
[+] EMBL CNS094F3 [CTGTTTGAGTTTGCAACTGATTGAAGACGAAAAAAAAAACAAATGCAAATCGCCAGTGTGAGTGAGTGTACAAAATAAAAGAAAAGAAAATTAACAACCAAGCGCGCCTATCAGCCAACGATGCGATGGTGAGTGGGGTGAAAAAAGTGAGAAAAGTGTTATGAATTTGTATCGTCGGAGGAAAAATGTTCCCTTCTCCCGCCCGCAATCAACGAGTGAGATTTGTTTGCGCATTGTTGTTCAACATTAATCAGCGCAATTCACCGAACGCCAGCAGTTGGCCATGAGTGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAG CGAGAAAGCATAGCAGCAGCAGCACTAGCAGCACGTGTTACTGAAGAAGGTGTTAACGGATTGGCGTCCCTTGTACCGTGCTACACATCCTTGCCCTGTTTGTGTGTATTTTCCGTGAAAAGAAAAGAAAAGGAAAATTTAGAAGGCAATGTTTTAAGCATGTGGACAATTGTTTATTGGACTGTAAAACCCTGTATGTCATCGGAATGTTTGACTCGATGAAGTTATCGCAATCAGAATGGATTCTGGATTTAGGACTGAGACATCATCTGGCATGTGATGAAGAATTGTATCACAAAATAACATAGAAAAACTAAAAACTACACAGCACAAAAGTAAGAAACGGAAGTAGATTTCAACCCAGATCGTATCACAATGCTCTTAACATGGAAGGAATATTTCAATTTTGCTCCGA ]
[+] EMBL CNS094OE [ GCGCGCCTATCAGCCAACGATGCGATGGTGAGTGGGGTGAAAAAAGTGAGAAAAGTGTTATGAATTTGTATCGTCGGAGGAAAAATGTTCCCTTCTCCCGCCCGCAATCAACGAGTGAGATTTGTTTGCGCATTGTTGTTCAACATTAATCAGCGCAATTCACCGAACGCCAGCAGTTGGCCATGAGTGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAGTCGAGAAAGCATAGCAGCAGCAGCACTAGCAGCACGTGTTACTGAAGAAGGTGTTAACGGATTGGCGTCCCTTGTACCGTGCTACACATCCTTGCCCTGTTTGTGTGTATTTTCCGTGAAAAGAAAAGAAAAGGAATTTTTAGAAGGCAATGTTTTAAGCATGTGGACAATTGTTTATTGGACTGTAAAACCCTGTATGTCATCGGAATGTTTGACTCGATGAAGTTATCGCAATCAGAATGGATTCTGGATTTAGGACTGAGACATCATCTGGCATGTGATGAAGAATTGTATCACAAAATAACATAGAAAAACTAAAAACTACACAGCACAAAAGTAAGAAACGGAAGTAGATTTCAACCCAGATCGTATCACAATGCTCTTAACATGGAAGGAATATTTCCATTTTGCTCCGACAAAAACGAACTAGCATTGCGATAGAATTTACAAAGAAAGCATCAGCAACCTACCCAACCGGAACAATGTACACCGGAAAGGCGAAAATATAATGATGTAAATGCAACGCGGTGTATCAAAAGGTGCAAAATACTGCAATGAA ]
[-] EMBL CNS094OF [ GCCAGCAGTTGGCCATGAGTGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAG CGAGAAAGCATAGCAGCAGCAGCACTAGCAGCACGTGTTACTGAAGAAGGTGTTAACGGATTGGCGTCCCTTGTACCGTGCTAAACATCCTTGCCCTGTTTGTGTGTATTTTCCGTGAAAAGAAAAGAAAAGGAAAATTTAGAAGGCAATGTTTTAAGCATGTGGACAATTGTTTATTGGACTGTAAAACCCTGTATGTCATCGGAATGTTTGACTCGATGAAGTTATCGCAATCAGAATGGATTCTGGATTTAGGACTGAGACATCCTCTGGCATGTGATGGAGga ]
[-] EMBL CNS094F4 [ CGGAATGTTTGACTCGATGAAGTTATCGCAATCAGAATGGATTCTGGATTTAGGACTGAGACATCCTCTGGCATGTGATGAAGAATTGTATCACAAAATAACATAGAAAAACTAAAAACTACACAGCACAAAAGTAAGAAACGGAAGTAGATTTCAACCCAGATCGTATCACAATGCTCTTAACATGGAAGGAATATTTCCATTTTGCTCCGACAAAAACGAACTAGCATTGCGATAGAATTTATAAAGAAAGCATCAGCAACCTACCCAACCGGAACAATGTACCCCGGAAAGGCGAAAATATAATGATGTAAATGCAACGCGGTGTATCAAAAGGTGCAAAATACTGCAATGAAAGCACTTGCAGTTATGCCACCTGATCCACACCCACAGCACAAGGAGCGTCACCTTCGACAACGAGACATCAAACAAGCGCAGCTAATAATTCGATCCCTTTATCCAACGAGCCAATTATTTGTGCAGGGATAGGAAGGAAAAATCAGAAAAAGGTATGTCGCCACTCGCTCGGTGTATTCATCGTTAAAAATCGATCTGGATTTAACGGGACGGGACTGCTAACTTGACTCGAATAAAAGACTCGTCCCAG]
consensusID : consensus_6417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence
[CCATTTCCGTGTCACCGAACACGTGGTGTTTAATTAATTGTTTATGTTTGCAAAAGTGTTGAGAGCCGCGTTGAAGAAGTTGAATACCAAAAAAACCGAAGGAAACGAACCGTGCCGCAGCAAACAAAACTTAACGGATCGCTGTTTATCAGTTTTGCTCGGGGTCGGGCTTTGGCCATAACAACCAAGTCTGGCGACGGCGGATAGCAAGAAAAGTGATTGAAAAGTGAAATCAAACGACACGGAAATCGATCAAGCGTGACCAATTGTTTTTATCTCCTTCATTTTTAGTGTGTTTTTGTCCATCTGTTCGAGTTTGCAACTGATTGGAGACGGAAAAAAACAAATGCAAATCGCCAGTGTGAGTGAGTGTACAAAAAAAATGAAAATTAACAACCAAGTGCGGTGAGTGAGGTGGAAAAAGCGAGAAAAGTGTTATGAATTTGTATCGTCGGAGGAAAATTGTTCCCTTCTCCCGCCCGCAATCAACGAGTGTGATTTGTTTGCGCACCGTAGTTCAACATTAATCAGCGCAAATCGCCGAACGCCAGCAGTTGGCCATGAGCGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAGCGAGAAAGCATAGCAGCAGCAGCACGTGTTAGTGAAGAAGGTATTAACGAATTGGCGCCACTTTTACCGTGCTACACATCCTTGTCCTGTTTGTTTGTATT]
[+] EMBL BX608630 [CCATTTCCGTGTCACCGAACACGTGGTGTTTAATTAATTGTTTATGTTTGCAAAAGTGTTGAGAGCCGCGTTGAAGAAGTTGAATACCAAAAAAACCGAAGGAAACGAACCGTGCCGCAGCAAACAAAACTTAACGGATCGCTGTTTATCAGTTTTGCTCGGGGTCGGGCTTTGGCCATAACAACCAAGTCTGGCGACGGCGGATAGCAAGAAAAGTGATTGAAAAGTGAAATCAAACGACACGGAAATCGATCAAGCGTGACCAATTGTTTTTATCTCCTTCATTTTTAGTGTGTTTTTGTCCATCTGTTCGAGTTTGCAACTGATTGGAGACGGAAAAAAACAAATGCAAATCGCCAGTGTGAGTGAGTGTACAAAAAAAATGAAAATTAACAACCAAGTGCGGTGAGTGAGGTGGAAAAAGCGAGAAAAGTGTTATGAATTTGTATCGTCGGAGGAAAATTGTTCCCTTCTCCCGCCCGCAATCAACGAGTGTGATTTGTTTGCGCACCGTAGTTCAACATTAATCAGCGCAAATCGCCGAACGCCAGCAGTTGGCCATGAGCGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAGCGAGAAAGCATAGCAGCAGCAGCACGTGTTAGTGAAGAAGGTATTAACGAATTGGCGCCACTTTTACCGTGCTACACATCCTTGTCCTGTTTGTTTGTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6417#0 ------------------------------------------------------------
consensus_6417#1 CCATTTCCGTGTCACCGAACACGTGGTGTTTAATTAATTGTTTATGTTTGCAAAAGTGTT 60
consensus_6417#0 ------------------------------------------------------------
consensus_6417#1 GAGAGCCGCGTTGAAGAAGTTGAATACCAAAAAAACCGAAGGAAACGAACCGTGCCGCAG 120
consensus_6417#0 ------------------------------------------------------------
consensus_6417#1 CAAACAAAACTTAACGGATCGCTGTTTATCAGTTTTGCTCGGGGTCGGGCTTTGGCCATA 180
consensus_6417#0 ------------------------------------------------------------
consensus_6417#1 ACAACCAAGTCTGGCGACGGCGGATAGCAAGAAAAGTGATTGAAAAGTGAAATCAAACGA 240
consensus_6417#0 ------------------------------------------------------------
consensus_6417#1 CACGGAAATCGATCAAGCGTGACCAATTGTTTTTATCTCCTTCATTTTTAGTGTGTTTTT 300
consensus_6417#0 ------CTGTTTGAGTTTGCAACTGATTGAAGACGAAAAAAAAAACAAATGCAAATCGCC 54
consensus_6417#1 GTCCATCTGTTCGAGTTTGCAACTGATTGGAGACGGAAAAAA--ACAAATGCAAATCGCC 358
***** ***************** ***** ****** ****************
consensus_6417#0 AGTGTGAGTGAGTGTACAAAATAAAAGAAAAGAAAATTAACAACCAAGCGCGCCTATCAG 114
consensus_6417#1 AGTGTGAGTGAGTGTACAAAA-----AAAATGAAAATTAACAACCAAGTGCG-------- 405
********************* *** ***************** ***
consensus_6417#0 CCAACGATGCGATGGTGAGTGGGGTGAAAAAAGTGAGAAAAGTGTTATGAATTTGTATCG 174
consensus_6417#1 --------------GTGAGTGAGGTGGAAAAAGCGAGAAAAGTGTTATGAATTTGTATCG 451
******* **** ****** **************************
consensus_6417#0 TCGGAGGAAAAATGTTCCCTTCTCCCGCCCGCAATCAACGAGTGAGATTTGTTTGCGCAT 234
consensus_6417#1 TCGGAGGAAAATTGTTCCCTTCTCCCGCCCGCAATCAACGAGTGTGATTTGTTTGCGCAC 511
*********** ******************************** **************
consensus_6417#0 TGTTGTTCAACATTAATCAGCGCAATTCACCGAACGCCAGCAGTTGGCCATGAGTGGCGG 294
consensus_6417#1 CGTAGTTCAACATTAATCAGCGCAAATCGCCGAACGCCAGCAGTTGGCCATGAGCGGCGG 571
** ********************* ** ************************* *****
consensus_6417#0 GAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTA 354
consensus_6417#1 GAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTA 631
************************************************************
consensus_6417#0 CGATTTCAGCGAGAAAGCATAGCAGCAGCAGCACTAGCAGCACGTGTTACTGAAGAAGGT 414
consensus_6417#1 CGATTTCAGCGAGAAAGCATAGCAGCAGCA---------GCACGTGTTAGTGAAGAAGGT 682
****************************** ********** **********
consensus_6417#0 GTTAACGGATTGGCGTCCCTTGTACCGTGCTACACATCCTTGCCCTGTTTGTGTGTATTT 474
consensus_6417#1 ATTAACGAATTGGCGCCACTTTTACCGTGCTACACATCCTTGTCCTGTTTGTTTGTATT- 741
****** ******* * *** ******************** ********* ******
consensus_6417#0 TCCGTGAAAAGAAAAGAAAAGGAAAATTTAGAAGGCAATGTTTTAAGCATGTGGACAATT 534
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 GTTTATTGGACTGTAAAACCCTGTATGTCATCGGAATGTTTGACTCGATGAAGTTATCGC 594
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 AATCAGAATGGATTCTGGATTTAGGACTGAGACATCATCTGGCATGTGATGAAGAATTGT 654
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 ATCACAAAATAACATAGAAAAACTAAAAACTACACAGCACAAAAGTAAGAAACGGAAGTA 714
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 GATTTCAACCCAGATCGTATCACAATGCTCTTAACATGGAAGGAATATTTCCATTTTGCT 774
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 CCGACAAAAACGAACTAGCATTGCGATAGAATTTACAAAGAAAGCATCAGCAACCTACCC 834
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 AACCGGAACAATGTACACCGGAAAGGCGAAAATATAATGATGTAAATGCAACGCGGTGTA 894
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 TCAAAAGGTGCAAAATACTGCAATGAAAGCACTTGCAGTTATGCCACCTGATCCACACCC 954
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 ACAGCACAAGGAGCGTCACCTTCGACAACGAGACATCAAACAAGCGCAGCTAATAATTCG 1014
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 ATCCCTTTATCCAACGAGCCAATTATTTGTGCAGGGATAGGAAGGAAAAATCAGAAAAAG 1074
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 GTATGTCGCCACTCGCTCGGTGTATTCATCGTTAAAAATCGATCTGGATTTAACGGGACG 1134
consensus_6417#1 ------------------------------------------------------------
consensus_6417#0 GGACTGCTAACTTGACTCGAATAAAAGACTCGTCCCAG 1172
consensus_6417#1 --------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||