These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 961 fasta sequence [CCGCGGACGCGTGGGGTTTAGCGGACGCG-TTGTTCCACGGTCTGCTACGAATTCCTCGTAATTTAAGGTAGCCACAATGCCAGCGAAGGATGAAAAGACCGCGAAGCCCGCTGCGGGCAAGGACAAGTCGAAGAACGTGATGCGCGATCTGCGTATCCGCAAGCTCTGCCTGAACATTTGCGTCGGCGAGTCCGGTGATAGGCTGACACGTGCCGCCAAGGTGCTGGAACAGCTGACCAACCAGACGCCCGTCTACTCGAAGGCCCGCTACACCGTGCGCTCGTTCGGCATCCGTCGTAACGAAAAGATTGCCGTCCACTGCACGGTGCGCGGTGCCAAGGCGGAGGAGATCCTCGAGCGTGGCCTGAAGGTGCGCGAGTACGAGCTGCGTCGCGACAACTTCTCGCAGACCGGCAACTTCGGCTTCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCGACGATCGGTATCTACGGTTTGGACTTCTACGTTGTGCTTGGCCGTCCAGGATACAACGTTGCCCAGCGACGACGCAAGATGGGCAAGATCGGCTTCATCCACCGTCTGACCAAGGAGGACGCGATGAAGTGGTTCCAGCAGAAGTACGACGGTGTCATCCTGAACAGCAAGGCGAAGTAAGAGCCCGGATACGCTCTTCCTTATGCACGTTTATGTGTGTTGCGAGTGCTTCTAAAGTTTGGGTAAGACAGGTGTGCCGCGGAGGAGGCGGAGGAAGGACCGGAGGAAGGACCGGAGCAGGTGGGCGCGTTGAGAAAAGAATAAACAATTTTCATCGAAGCCATCATCGCCGAAGTTTTGGGTGAAAATACGGTGTACAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAGTTACAGCTACTGATGTACTCAACTCATGAACAGTTCCTTCATTAGGAGTTAAGGTAGATGCTACTCCA] [+] EMBL BM582701 [CCGCGGACGCGTGGGGTTTAGCGGACGCG TTGTTCCACGGTCTGCTACGAATTCCTCGTAATTTAAGGTAGCCACAATGCCAGCGAAGGATGAAAAGACCGCGAAGCCCGCTGCGGGCAAGGACAAGTCGAAGAACGTGATGCGCGATCTGCGTATCCGCAAGCTCTGCCTGAACATTTGCGTCGGCGAGTCCGGTGATAGGCTGACACGTGCCGCCAAGGTGCTGGAACAGCTGACCAACCAGACGCCCGTCTACTCGAAGGCCCGCTACACCGTGCGCTCGTTCGGCATCCGTCGTAACGAAAAGATTGCCGTCCACTGCACGGTGCGCGGTGCCAAGGCGGAGGAGATCCTCGAGCGTGGCCTGAAGGTGCGCGAGTACGAGCTGCGTCGCGACAACTTCTCGCAGACCGGCAACTTCGGCTTCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCGACGATCGGTATCTACGGTTTGGACTTCTACGTTGTGCTTGGCCGTCCAGGATACAACGTTGCCCAGCGACGACGCAAGATGGGCAAGATCGGCTTCATCCACCGTCTGACCAAGGAGGACGCGATGAAGTGGTTCCAG ] [+] EMBL CNS0981W [ gttGTTTAGCGGACGCGTTTGTTCCACGGTCTGCTACGAATTCCTCGTAATTTAAGGTAGCCACAATGCCAGCGAAGGATGAAAAGACCGCGAAG CCGCTGCGGGCAAGGACAAGTCGAAGAACGTGATGCGCGATCTGCGTATCCGCAAGCTCTGCCTGAACATTTGCGTCGGCGAGTCCGGTGATAGGCTGACACGTGCCGCTAAGGTGCTGGAACA CTGACCAACCAGACGCCCGTCTACTCGAAGGCCCGCTACACCGTGCGCTCGTTCGGCATCCGTCGTAACGAAAAGATTGCCGTCCACTGTACGGTGCGCGGTGCCAAGGCGGAGGAGATCCTCGAGCGTGGCCTGAAGGTGCGCGAGTACGAGCTGCGTCGCGACAACTTCTCGCAGACCGGCAACTTCGGCTTCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCGACGATCGGTATCTACGGTTTGGACTTCTACGTTGTGCTTGGCCGTCCAGGATACAACGTTGCCCAGCGACGACGCAAGATGGGCAAGATCGGCTTCATCCACCGTCTGACCAAGGAGGACGCGATGAAGTGGTTCCAGCAGAAGTACGACGGTGTCATCCTGAACAGCAAGGCGAAGTAAGAGCCCGGATACGCTCTTCCTTATGCACGTTTATGTGTGTTGCGAGTGCTTCTAAAGTTTGGGTAAGACAGGTGTGCCGCGGAGGAGGCGGAGGAAGGACCGGAGGAAGGACCGGAGCAGGTGGGCGCGTTGAGAAAAGAATAAACAATTTTCATCGAAGCCATCATCGCCGAAGTTTTGGGTGAAAATACGGTGTACAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL CNS09MK3 [ TCGAAGCCATCATCCCCGAAGGTTTGGGTGAAAATACGGTGTACAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAATTCGAATTTTAGTTACAGCTACTGATGTACTCAACTCATGAACAGTTCCTTCATTAGGAGTTAAGGTAGATGCTACTCCA] consensusID : consensus_6423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 926 fasta sequence [CGTGCCCATTGACGCTAAACTTTCCTGCCACTTGTTGGGTGTGATTTCGATTCGACTTCTACTTTCGGTGGTGCTGTGTTGCCTAGTGGCTTTG-CGCATCCAGT-TCCGT-TGCGGCCGTCGGCGAGCTAATTGGGTTAAATTGTCTGTTTGTCCTAAACCAACATGTCGTGGTACTATACGCCCCACCCGACCGTTGTGCCGGCGGAAGACTTCGATGCATCGGCCGACGCCAATGCACTCCGGAAGGCGATGAAAGGTTTCGGCACGAGACGAGCAGGCCATCATCGACATTCTCTGTGCCCGTTCGAACGGAAAAAAAAAAAAAATAGCGGAAGCGTATCAAGCGTGAATTGGGCAGGGATTTGATCGACGATTTGAAGTCGGAGCTGGGCGGCAAGTTCGAGGACGTTATCCTGGGGCTGATGCTGCGCCCGGAAGCGTACCTGTGCAAGCAGCTGCACAAAGCGATGGACGGTATCGGGACCGACGAAAAGTCGCTGATCGAAATCATCTGCCCGCAGACGAACGATCAGATACGGGCGATCGTCGACTGCTACGAGGAGATGTACAGCCGGCCCCTGGCGACGCATCTGTGCAGCGAAACGTCCGGCAGCTTCCGCCGGTTGCTGACCATGATCATCGTAGGATCGCGCGATCCCCAGGGCACAGTCGATCCAGAAAAAAAAAAAGAGCAGGCCAAGCAGCTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAAAGTTTGTCCGGCCGTACGATCGAGCAGGCACTGAAGGCGGAACTGAGCGGTGAGCTTTATGATGCGCTCAGCCGAATCGTGGAGTGCGTTCAGATGGCACCGCACTTCTTTGCCA] [+] EMBL CNS09KBN [CGTGCCCATTGACGCTAAACTTTCCTGCCACTTGTTGGGTGTGATTTCGATTCGACTTCTACTTTCGGTGGTGCTGTGTTGCCTAGTGGCTTTG CGCATCCAGT TCCGT TGCGGCCGTCGGCGAGCTAATTGG ] [+] EMBL CNS08VGO [ TTCGATTCGACTTCTACTTTCGGTGGTGCTGTGTTGCCTAGTGGCTTTGCCGCATCCAGTATCCGTATGCGGCCGTCGGCGAGCTAATTGTGTTAAATTGTCTGTTTGTCCTAAACCAACATGTCGTGGTACTATACGCCCCACCCGACCGTTGTGCCGGCGGAAGACTTCGATGCATCGGCCGACGCCAATGCACTCCGGAAGGCGATGAAAGGTTTCGGCACGAGACGAGCAGGCCATCATCGACATTCTCTGTGCCCGTTCGAACGGAAAAAAAAAAAAAATAGCGGAAGCGTATCAAGCGTGAATTGGGCAGGGATTTGATCGACGATTTGAAGTCGGAGCTGGGCGGCAAGTTCGAGGACGTTATCCTGGGGCTGATGCTGCGCCCGGAAGCGTACCTGTGCAAGCAGCTGCACAAAGCGATGGACGGTATCGGGACCGACGAAAAGTCGCTGATCGAAATCATCTGCCCGCAGACGAACGATCAGATACGGGCGATCGTCGACTGCTACGAGGAGATGTACAGCCGGCCCCTGGCGACGCATCTGTGCAGCGAAACGTCCGGCAGCTTCCGCCGGTTGCTGACCATGATCATCGTAGGATCGCGCGATCCCCAGGGCACAGTCGATCCAGAAAAAAAAAAAGAGCAGGCCAAGCAGCTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAAAGTTTGTCCGGCCGTACGATCGAGCAGGCACTGAAGGCGGAACTGAGCGGTGAGCTTTATGATGCGCTCAGCCGAATCGTGGAGTGCGTTCAGATGGCACCGCACTTCTTTGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6423#0 CCGCGGACGCGTGGGGTTTAGCGGACGCGTTGTT-CCACGGTCTGCTACGAATTCCTCGT 59 consensus_6423#1 ---------------------CGTGCCCATTGACGCTAAACTTTCCTGCCACTTGTTGG- 38 ** * * *** * * * * ** * * ** * * consensus_6423#0 AATTTAAGGTAGCCACAATGCCAGCGAAGGATGAAAAGACCGCGAAGCCCGCTGCGGGCA 119 consensus_6423#1 -GTGTGATTTCGATTCGACTTCTACTTTCGGTGGT---GCTGTGTTGCCTA--GTGGCTT 92 * * * * * * * * * * ** * * * *** * ** consensus_6423#0 AGGACAAGTCGAAGAACGTGATGCGCGATCTGCGTATCCGCAAGCTCTGCCTGAACATTT 179 consensus_6423#1 TGCGCA--TCCAGTTCCGTTGCG-GCCGTCGGCGAGCTAATTGGGTTAAATTGTCTGTTT 149 * ** ** * *** * ** ** *** * * ** *** consensus_6423#0 GCGTCGGCGAGTCCGGTGATAGGCTGACACGTGCCGCCAAGGTGCTGGAACAGCTGACCA 239 consensus_6423#1 GTCCTAAACCAACATGTCGTGGTACTATACGCCCCACCCGACCGTTGTGCCGGCGGAAGA 209 * * ** * * * *** ** ** * ** * ** ** * consensus_6423#0 ACCAGACGC--CCGTCTACTCGAAGGC---CCGCTACACCGTGCGCTCGTTCGGCATCCG 294 consensus_6423#1 CTTCGATGCATCGGCCGACGCCAATGCACTCCGGAAGGCGATGAAAGGTTTCGGCA---- 265 ** ** * * * ** * ** ** *** * * ** ******* consensus_6423#0 TCGTAACGAAAAGATTGCCGTCCAC-TGCACGGTGCGCGGTGCCAAGGCGGAGGAGATCC 353 consensus_6423#1 -CGAGACGAGCAGGCCATCATCGACATTCTCTGTGCCCGTTCGAACGGAAAAAAAAA--- 321 ** **** ** * ** ** * * * **** ** * * ** * * * consensus_6423#0 TCGAGCGTGGCCTGAAGGTGCGCGAGTACGAGCTGCGTCGCGACAACTTCTCGCAGACCG 413 consensus_6423#1 --AAAAATAGCGGAAGCGTAT-CAAGCGTGAATTGGGCAGGGAT--TTGATCGACGATTT 376 * * ** * ** * ** ** ** * * ** * *** ** consensus_6423#0 GCAACTTCGGCTT--CGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCGAC 471 consensus_6423#1 GAAGTCGGAGCTGGGCGGCAAGTTCGAGGACGTTATCCTGGGGCTGATGCTGCGCCCG-- 434 * * *** ***** ** ** * ***** * * * *** consensus_6423#0 GATCGGTATCTACGGTTTGGACTTCTACGTTGTGCTTGGCCGTCCAGGATACAACGTTGC 531 consensus_6423#1 GAAGCGTACCTGTG-CAAGCAGCTGCACAAAGCGATGGACGGTATCGG----------GA 483 ** *** ** * * * * ** * * * * * ** ** * consensus_6423#0 CCAGCGACGACGCAAGATGGGCAAGATCGGCTTCATCCAC-CGTCTGACCAAGGA-GGAC 589 consensus_6423#1 CCGACGAAAAGTC--GCTGATCGAAATCATCTGCCCGCAGACGAACGATCAGATACGGGC 541 ** *** * * * ** * * *** ** * ** ** ** ** * ** * consensus_6423#0 G-CGATGAAGTGGTTCCAGCAGAAGTACGACGGTGTCATCCTGAACAGCAAGGCGAAGTA 648 consensus_6423#1 GATCGTCGACTGCTACGAGGAGATGTACAGCCG-GCCCCTGGCGACGCATCTGTGCAGCG 600 * * * ** * * ** *** **** * * * * ** * * ** consensus_6423#0 AGAGCCCGGATACGCTCTTCCTTATGCACGTTTATGTGTGTTGCGAGTGCTTCTAAAGTT 708 consensus_6423#1 AAACGTCCGGCAGCTTCCGCCGGTTGC-TGACCATGATCATCGTAGGATCGCGCGATCCC 659 * * * * * ** ** *** * *** * * * * * consensus_6423#0 TGGGTAAGACAGGTGTGCCGCGGAGGAGGCGGAGGAAGGACCGGAGGAAGGACCGGAGCA 768 consensus_6423#1 CAGG--GCACAGTCGATCCA-GAAAAAAAAAAAGAGCAGGCCAAGCAGCTGTACGATGCG 716 ** **** * ** * * * ** * ** * ** ** consensus_6423#0 GGTGGGCGCGT-TGAGAAAAGAATAAACAATTTTCATCGAAGCCATCATCGCCGAAGTTT 827 consensus_6423#1 GGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCTCCT 776 ** * * ** * * * * * ** * * * *** * *** * consensus_6423#0 TGGGTGAA---AATACGGTGTACAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 884 consensus_6423#1 TCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAAAGTTTGTCCGGCCGTACGATCGAGC 836 * * * * * **** * * ** **** * * * consensus_6423#0 AAATTTTAGTTACAGCTACTGATGTACTCAACTCATGAACAGTTCCTTC--ATTA-GGAG 941 consensus_6423#1 AGGCACTGAAGGCGGA-ACTGAGCGGTGAGCTTTATGATGCGCTCAGCCGAATCGTGGAG 895 * * * * ***** * **** * ** * ** **** consensus_6423#0 TTAAGGTAGATGCTACTCCA----------- 961 consensus_6423#1 TGCGTTCAGATGGCACCGCACTTCTTTGCCA 926 * ***** ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||