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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence
[AGCAGATCGGCACAGGAGATTATAGGAGAGAGAAAGGAAAGAAAGCACCAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGAACAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGTGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGGTGGCTACTTCATCGAGTGCAA-CACCGNAACCGAGGTGTTTACATACGTTCTGCGNAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGGCCAACGTGTGAACAATGTTATCCACCAGTCCCATCCGGTGNAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAANCTGCCCTG-CCGAAGGATATGCCGCAGGTGCACGACAGCGACGGATAAGGGCGAACGAGGCAGGCGCACCAGGAAGCGGACTACCACCGGGCAGGACCGAGCAGGTTAACGTGTGCCTCGCAGTGTATTAGCGACAAGCTGCGCAAACTGAAGCGACGGTTCATCCGGTGTAGGTTCGCGAGATCACGATCACGCAGCCTAANGAAGGTTCCGTCTGCGA]
[+] EMBL BX466373 [AGCAGATCGGCACAGGAGATTATAGGAGAGAGAAAGGAAAGAAAGCACCAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGAACAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGTGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGGTGGCTACTTCATCGAGTGCAA CACCGNAACCGAGGTGTTTACATACGTTCTGCGNAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGGCCAACGTGTGAACAATGTTATCCACCAGTCCCATCCGGTGNAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAANCTGCCCTG CCGAAGGATATGCCGCAGGTGCACGACAGCGACGGATAAGGGCGAACGAGGCAGGCGCACCAGGAAGCGGACTACCACCGGGCAGGACCGAGCAGGTTAACGTGTGCCTCGCAGTGTATTAGCGACAAGCTGCGCAAACTGAAGCGACGGTTCATCCGGTGTAGGTTCGCGAGATCACGATCACGCAGCCTAANGAAGGTTCCGTCTGCGA]
[+] EMBL BX622236 [ cCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTG GGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCC GTGGCTACTTCATCGA TGCAACCACCGTAACCGA GTGTTTACATACGTTCTGC AAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAA AATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC GAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGCCCTGCCCGAAGGATATGCCGCAGGTGCACGACAGCGAC GATAA GGCGAACGA GCAGGCGCACCAGGAAGCGGACTACCACC GGCAGGA CGAGCAGGTTAACGTGTGCCTCG AGTGTATTAGCGACAAGCTGCGCAACCTGAAGCGACGGTNCATCCGGTGTA GTTCGC AGATCACGATCACGCA ]
consensusID : consensus_6425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[CCGCCCACGCGTCCGAAAGAAAGCAACAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGTAACCGAGTGTTTACATACGTTCTGCAAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGCCCTGCCCGAA]
[+] EMBL BM642014 [CCGCCCACGCGTCCGAAAGAAAGCAACAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGTAACCGAGTGTTTACATACGTTCTGCAAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGCCCTGCCCGAA]
consensusID : consensus_6425#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[TGCTCGAGGCAGAATCGCCAGAGGTTAAAAAGGAAAGAAAGCAACAATACGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGGTAACCCGACGTGTTCTACATACGTTCTGCAAAAGCTGCCTTGCTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCA]
[+] EMBL AL696827 [TGCTCGAGGCAGAATCGCCAGAGGTTAAAAAGGAAAGAAAGCAACAATACGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGGTAACCCGACGTGTTCTACATACGTTCTGCAAAAGCTGCCTTGCTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCA]
consensusID : consensus_6425#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[GAGGCAGAATCGCCACGAGGTGTAAGCACATAGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGANCATGGAAAAGACGGANTAAAGTTGAAAACACTGAAGCGAACACAGTCANCTGCGAGATATTGCTCCGTGGCTACGATTCATCGATGCGAAGCCACACGGGNAACCGAGGTGTTACAGTACGGTTACTGGCAANAAGGCNTGCCGTANGTGAAAAGCATTAAGA]
[+] EMBL BX466255 [GAGGCAGAATCGCCACGAGGTGTAAGCACATAGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGANCATGGAAAAGACGGANTAAAGTTGAAAACACTGAAGCGAACACAGTCANCTGCGAGATATTGCTCCGTGGCTACGATTCATCGATGCGAAGCCACACGGGNAACCGAGGTGTTACAGTACGGTTACTGGCAANAAGGCNTGCCGTANGTGAAAAGCATTAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6425#0 AGCAGATCGGCACAGGAGATTATAGGAGAGAGAAAGGAAAGAAAGCACCAATAGATAAAA 60
consensus_6425#1 ----------------------CCGCCCACGCGTCCGAAAGAAAGCAACAATAGATAAAA 38
consensus_6425#2 ----TGCTCGAGGCAGAATCGCCAGAGGTTAAAAAGGAAAGAAAGCAACAATACGATAAA 56
consensus_6425#3 -------------------GAGGCAGAATCGCCACGAGGTGTAAGCAC--ATAGAT-AAA 38
* ***** *** ***
consensus_6425#0 AAAGGGCAGTTTTCTAAAAGTCGCGAACAACAAATTCGTGCGATCGTGGTAAAAACAGCA 120
consensus_6425#1 AAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCA 98
consensus_6425#2 AAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCA 116
consensus_6425#3 AAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAA-CAGCA 97
************************** *************************** *****
consensus_6425#0 TCATCCCTGGTGGCTTGCCCGGCGCCTGTCCCGACCATGGAAA-GACGGAT-AAAGTTGA 178
consensus_6425#1 TCATCCCTGG--GCTTGCCCGGCGCCTGTCCCGACCATGGAAA-GACGGAT-AAAGTTGA 154
consensus_6425#2 TCATCCCTGG--GCTTGCCCGGCGCCTGTCCCGACCATGGAAA-GACGGAT-AAAGTTGA 172
consensus_6425#3 TCATCCCTGG--GCTTGCCCGGCGCCTGTCCCGANCATGGAAAAGACGGANTAAAGTTGA 155
********** ********************** ******** ****** ********
consensus_6425#0 AAACACTGAA-CGAACACA-TCACCTGCGAGAT-TTGC-CGGTGGCTAC--TTCATCGAG 232
consensus_6425#1 AAACACTGAA-CGAACACA-TCACCTGCGAGAT-TTGC-CG-TGGCTAC--TTCATCGA- 206
consensus_6425#2 AAACACTGAA-CGAACACA-TCACCTGCGAGAT-TTGC-CG-TGGCTAC--TTCATCGA- 224
consensus_6425#3 AAACACTGAAGCGAACACAGTCANCTGCGAGATATTGCTCCGTGGCTACGATTCATCGAT 215
********** ******** *** ********* **** * ******* ********
consensus_6425#0 -TGCAAC-AC-CGNAA--CCGAGGTGTT-TACATACGTTCTGCGNAAAGCTGCCTTG-TG 285
consensus_6425#1 -TGCAACCAC-CGTAA--CCGAG-TGTT-TACATACGTTCTGC-AAAAGCTGCCTTG-TG 258
consensus_6425#2 -TGCAACCAC-CGGTAACCCGACGTGTTCTACATACGTTCTGC-AAAAGCTGCCTTGCTG 281
consensus_6425#3 GCGAAGCCACACGGGNAACCGAGGTGTTACA-GTACGGTTACTGGCAANAAGGCNTG--- 271
* * * ** ** **** **** * **** * ** * * **
consensus_6425#0 AAGCATTTAGAGGAAAACAATACCTGGCCAACGTGTGAACAATGTTATCCACCAGTCCCA 345
consensus_6425#1 AAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAA-AATGTTATCCACCAGTCCCA 317
consensus_6425#2 AAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAA-AATGTTATCCACCAGTCCCA 340
consensus_6425#3 CCGTANGTGAAAAGCATTAAGA-------------------------------------- 293
* * * * * ** *
consensus_6425#0 TCCGGTGNAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC 405
consensus_6425#1 TCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC 377
consensus_6425#2 TCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC 400
consensus_6425#3 ------------------------------------------------------------
consensus_6425#0 GGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAANCTGC 465
consensus_6425#1 G-AACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGC 436
consensus_6425#2 G-AACCTCATGGACAATGAGATGCA----------------------------------- 424
consensus_6425#3 ------------------------------------------------------------
consensus_6425#0 CCTGCCGAAGGATATGCCGCAGGTGCACGACAGCGACGGATAAGGGCGAACGAGGCAGGC 525
consensus_6425#1 CCTGCCCGAA-------------------------------------------------- 446
consensus_6425#2 ------------------------------------------------------------
consensus_6425#3 ------------------------------------------------------------
consensus_6425#0 GCACCAGGAAGCGGACTACCACCGGGCAGGACCGAGCAGGTTAACGTGTGCCTCGCAGTG 585
consensus_6425#1 ------------------------------------------------------------
consensus_6425#2 ------------------------------------------------------------
consensus_6425#3 ------------------------------------------------------------
consensus_6425#0 TATTAGCGACAAGCTGCGCAAACTGAAGCGACGGTTCATCCGGTGTAGGTTCGCGAGATC 645
consensus_6425#1 ------------------------------------------------------------
consensus_6425#2 ------------------------------------------------------------
consensus_6425#3 ------------------------------------------------------------
consensus_6425#0 ACGATCACGCAGCCTAANGAAGGTTCCGTCTGCGA 680
consensus_6425#1 -----------------------------------
consensus_6425#2 -----------------------------------
consensus_6425#3 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||