These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1154 fasta sequence [CAGGTAGCGAACATCATCATGATCCGTAAGCGTATGTTCCAAAGCCCCGATACATCTATCCGGCATTTATGTGTGCCGAGTGATCGCGTTATCGATTATGAATGAAAAACAAAACTGACGCAAATGGCATGCTTTAACAACAAAAAAAAAACTCCCGTAACAACTGGAGAAACCGTTGATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAACAACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATGCGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCTGATCCGAGTGAGCCATGCAATTGAACACGTTGCGTTGCGAATTATGTTGTCATTTCTATAAGAACACGATCATCCGTTATTGAGGAACTTTCATTTTTGAGTAAGAAGAACACTCACCCTATGCGAAGCANGCATTGTTTGGGATTTTCCC-AAAAAAGAAAGATAAACGAAATCTAAACGCACATGATTGTAGATCCTCACACGATCGTAGTAACACATCGAACGTTGATTGCATGCCGGGTTTGTTTTTAAAACAGTGCAATCCAATTGTATAGATTATGCACACACACACATACACATACACACCTACAGTCAGCGGACGGAAACATTAAATTTACAAAACTATTGTGGAAAAGCGTGTAGGTAATT-GTCTGGGGGAAGCTATCGCATTACTACGATACAAAATCACAAACTACACGCGTGTTTGATGCTCTTTACCGCATAATTCTAAATGTTTTGGGTTTCCGTTCTAAGACAAACGCAGCCAATGCCGCTAACGATGATTTATGTTTTAGCTCATTTTTAATCAATCAAACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAGTGCCGTGTATCGTGTACTATGGACATCTGGCAAATCACAATAGAAACACACACACATACAAAGACGTGGTCGTAGAAGGAATCGTGGAGTCAGGTGATGGATTGTGGAGGTTAATTTGAATGTCGAAGCATAGTGAAAGTGGACGAACGACCCAAACG] [+] EMBL BX626342 [CAGGTAGCGAACATCATCATGATCCGTAAGCGTATGTTCCAAAGCCCCGATACATCTATCCGGCATTTATGTGTGCCGAGTGATCGCGTTATCGATTATGAATGAAAAACAAAACTGACGCAAATGGCATGCTTTAACAACAAAAAAAAAACTCCCGTAACAACTGGAGAAACCGTTGATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAACAACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATGCGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCTGATCCGAGTGAGCCATGCAATTGAACACGTTGCGTTGCGAATTATGTTGTCATTTCTATAAGAACACGATCATCCGTTATTGAGGAACTTTCATTTTTGAGTAAGAAGAACACTCACCCTATGCGAAGCANGCATTGTTTGGGATTTTCCC AAAAAAGAAAGATAAACGAAATCTAAACGCACATGATTGTAGATCCTCACNCGATCGTAGTAACACATCGAACGTTGATTGCATGCCGGGTTTGTTTTT AAACAGTGCAATCCAATTGTATAGATTATGCACACACACACATACACATACACACCTACAGTCAGNGGACGG AACATCAAATTTTCCAAACTATTG ] [+] EMBL BX612374 [ TTGGGATTTCCCCAAAAAAAGAAAGATAAACGAAATCTAAACGCACATGATTGTAGATCCTCACACGATCGTAGTAACACATCGAACGTTGATTGCATGCCGGGTTTGTTTTTAAAACAGTGCAATCCAATTGTATAGATTATG CACACACACATACACATACACACCTACAGTCAGCGGACGGAAACATTAAATTTACAAAACTATTGTGGAAAAGCGTGTAGGTAATT GTCTGGGGGAAGCTATCGCATTACTACGATACAAAATCACAAACTACACGCGTGTTTGATGCTCTTTACCGCATAATTCTAAATGTTTTGGGTTTCCGTTCTAAGACAAACGCAGCCAATGCCGCTAACGATGATTTATGTTTTAGCTCATTTTTAATCAATCAAACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAGTGCCGTGTATCGTGTACTATGGACATCTGGCAAATCACAATAGAAACACACACAC ] [+] EMBL BM633006 [ ccgTGTAGATCCTCACACGATCGTAGTAACACATCGAACGTTGATTGCATGCCGGGTTTGTTTTTAAAACAGTGCAATCCAATTGTATAGATTATGCACACACACACATACACATACACACCTACAGTCAGCGGACGGAAACATTAAATTTACAAAACTATTGTGGAAAAGCGTGTAGGTAATTAGTCTGGGGGAAGCTATCGCATTACTACGATACAAAATCACAAACTACACGCGTATTTGATGCTCTTTACCGCATAATTCTAAATGTTTTGGGTTCCCGTTCTAAGACAAACGCAGCCAATGCCGCTAACGATGATTTATGTTTTAGCTCATTTTTAATCAATCAAACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATGGCACTTTTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAGTG CGTGTATCGTGTACTATGGACATCTGGCAAATCACAATAGAAACACACACAGATACAAAGACGTGGTCGTAGAAGGAATCGTGGAGTCAGGTGATGGATTGTGGAGGTTAATTTGAATGTCGAAGCATAGTGAAAGTGGACGAACGACCCAAACG] consensusID : consensus_6427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [CAGAATCCCCCCAGGTTAATGGATCTTTACAAACCCAAAANAAAANAAACTTCCGTAACAACTGGAGAAACCGTTGATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAACAACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATGCGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCTGATCCGAGTGAGCCATGTAATTGGACACGTGCGTATGCGAATTNATGTAAGTCATATATCTNATAAGAACACGATCATCCGTTATTGAGGNAACTTTCATTTATTCGAGTTCACAGACAGAACACTCACCCTATGCGAAGCAGGGCCATTGTCTAGGGNATTATACCGCCAAAGAATNNAGAAACGATAAAAACGAAAATCTAAAAGGCACATATATNGTAGGAATTCCTTCAACACGGATTCGTAGGTAAACAACATTCCGAAACGTTGAATTGGCAATTGCCGAGGTTATGGTAATCATTCAAACAACAAGGTGGCNAACATCCCCCACAATTATGGTTAATTAGGACTNCACATAGCCACCAACACCACNCTTACAACATTACAACGACCTTAACAGGTCCAGGACGGGCCCGGGACAACCATTTAACATTTAACAAAACTTATATCGG] [+] EMBL AL692282 [CAGAATCCCCCCAGGTTAATGGATCTTTACAAACCCAAAANAAAANAAACTTCCGTAACAACTGGAGAAACCGTTGATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAACAACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATGCGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCTGATCCGAGTGAGCCATGTAATTGGACACGTGCGTATGCGAATTNATGTAAGTCATATATCTNATAAGAACACGATCATCCGTTATTGAGGNAACTTTCATTTATTCGAGTTCACAGACAGAACACTCACCCTATGCGAAGCAGGGCCATTGTCTAGGGNATTATACCGCCAAAGAATNNAGAAACGATAAAAACGAAAATCTAAAAGGCACATATATNGTAGGAATTCCTTCAACACGGATTCGTAGGTAAACAACATTCCGAAACGTTGAATTGGCAATTGCCGAGGTTATGGTAATCATTCAAACAACAAGGTGGCNAACATCCCCCACAATTATGGTTAATTAGGACTNCACATAGCCACCAACACCACNCTTACAACATTACAACGACCTTAACAGGTCCAGGACGGGCCCGGGACAACCATTTAACATTTAACAAAACTTATATCGG] consensusID : consensus_6427#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [AACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCTCACTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAG] [+] EMBL BX612555 [AACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCTCACTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6427#0 CAGGTAGCGAACATCATCATGATCCGTAAGCGTATGTTCCAAAGCCCCGATACATCTATC 60 consensus_6427#1 ------------------------------------------------------------ consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 CGGCATTTATGTGTGCCGAGTGATCGCGTTATCGATTATGAATGAAAAACAAAACTGACG 120 consensus_6427#1 ---------------------------------------------CAGAATCCCCCCAGG 15 consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 CAAATGGCATGCTTTAA---CAACAAAAAAAAAACTCCCGTAACAACTGGAGAAACCGTT 177 consensus_6427#1 TTAATGGATCTTTACAAACCCAAAANAAAANAAACTTCCGTAACAACTGGAGAAACCGTT 75 consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 GATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAAC 237 consensus_6427#1 GATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAAC 135 consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 AACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATG 297 consensus_6427#1 AACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATG 195 consensus_6427#2 ---------------------------------------------------------AAC 3 * consensus_6427#0 CGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCT-GATCCGAGTGA 356 consensus_6427#1 CGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCT-GATCCGAGTGA 254 consensus_6427#2 TACTTACA----CATCTCAT-AAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAA 58 * **** * * * * *** **** ** ** **** * ** *** * consensus_6427#0 GCCATGCAATTGAACACGTTGCGT-TGCGAATTA-TGTT-GTCAT---TTCTATAAGAAC 410 consensus_6427#1 GCCATGTAATTGGACACGT-GCGTATGCGAATTNATGTAAGTCATATATCTNATAAGAAC 313 consensus_6427#2 GGACCGTCATTGCTCACTCCTCGTACGC----TGGTGCAGGACGAGAAGTGAGCAAGGAC 114 * * **** *** *** ** * ** * * *** ** consensus_6427#0 -ACGATCAT-CCGTTATTGAG---GAA-CTTTCATTT--TTGAG-T----AAGAAGAACA 457 consensus_6427#1 -ACGATCAT-CCGTTATTGAG---GNAACTTTCATTTATTCGAG-TTCACAGACAGAACA 367 consensus_6427#2 CGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAG---- 170 ** * ** * ** * * ******* * *** * ** consensus_6427#0 CTCACCCTATGCGAAGCANG--CATTGTTT--GGGATTTTCCCAAAAAAGAA-AGATAAA 512 consensus_6427#1 CTCACCCTATGCGAAGCAGGGCCATTGTCTAGGGNATTATACCGCCAAAGAATNNAGAAA 427 consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 CGAAATCTAAACGCACATGATTGTAGATCCTCACACGATCGTAGTAACACATCGAACGTT 572 consensus_6427#1 CGA----TAAAAACG-AAAATCTAAAAGGCACATAT-ATNGTAGGAATTCCTTCAACACG 481 consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 GATTGCATGCCGGGTTTGTTTTTAAAACAGTGCAATC-CAATTGTATAGATTATGCACAC 631 consensus_6427#1 GATTCGTAGGTAAACAACATTCCGAAACGTTGAATTGGCAATTGCCGAGGTTATG----- 536 consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 ACACACATACACATACACACCTACAGTCAGCGGACGGAAACATTAAATTTACAAAACTAT 691 consensus_6427#1 ------GTAATCATTCAAACAACAAGGTGGCNAAC----------ATCCCCCACAATTAT 580 consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 TGTGGAAAAGCG-TGTAGGTAATTGTCTGGGGGAAGCT-ATCGCATTACTACGATACAAA 749 consensus_6427#1 GGTTAATTAGGACTNCACATAGCCACCAACACCACNCTTACAACATTACAACGACCTTAA 640 consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 ATCACAAACTACACGCGTGTTTGATGCTC-TTTACCGCATAATTCTAAATGTTTTGGGTT 808 consensus_6427#1 --CAGGTCCAGGACGGGCCCGGGACAACCATTTAACATTTAACAAAACTTATATCGG--- 695 consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 TCCGTTCTAAGACAAACGCAGCCAATGCCGCTAACGATGATTTATGTTTTAGCTCATTTT 868 consensus_6427#1 ------------------------------------------------------------ consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 TAATCAATCAAACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAA 928 consensus_6427#1 ------------------------------------------------------------ consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 GTGAGCAAGGACCGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTA 988 consensus_6427#1 ------------------------------------------------------------ consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 ATTGGCAGTGCCGTGTATCGTGTACTATGGACATCTGGCAAATCACAATAGAAACACACA 1048 consensus_6427#1 ------------------------------------------------------------ consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 CACATACAAAGACGTGGTCGTAGAAGGAATCGTGGAGTCAGGTGATGGATTGTGGAGGTT 1108 consensus_6427#1 ------------------------------------------------------------ consensus_6427#2 ------------------------------------------------------------ consensus_6427#0 AATTTGAATGTCGAAGCATAGTGAAAGTGGACGAACGACCCAAACG 1154 consensus_6427#1 ---------------------------------------------- consensus_6427#2 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||