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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 749 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGAGTAACTTACCGGTTGCGTACCGTGTGTGAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGGTGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATATGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGCGGCTGTGTCCATCAGTTGGAAGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAGGAAGGATCCGCTGCCATG-ACCAGGAG-AAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTACTTGCAGTTTCGCTTTCCACATTAGCAGCACCGTACAGCTGATGGA]
[+] EMBL BM590988 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGAGTAACTTACCGGTTGCGTACCGTGTGTGAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGGTGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATATGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGCGGCTGTGTCCATCAGTTGGAAGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAGGAAGGATCCGCTGCCATGAACCAGGAGCAAGTTCGTTGATC ]
[+] EMBL BM654031 [ ccgGGAGTAACTTACCGGTTGCGTACCGTGTGTGAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGGTGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATATGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGCGGCTGTGTCCATCAGTTGGAAGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAGGAAGGATCCG ]
[+] EMBL BX608229 [ GTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATACGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGAGGCTGTGTCCATCAGTTGGAGGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTGCTGCAGGAAGGATCCGCTGCCATG ACCAGGAG AAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTACTTGCAGTTTCGCTTTCCACATTAGCAGCACCGTACAGCTGATGGA]
[+] EMBL BX628857 [ TGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATACGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGAGGCTGTGTCCATCAGTTGGAGGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTGCTGCAGGAAGGATCCGCTGCCATG ACCAGGAG AAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTAC ]
consensusID : consensus_6429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[GAATCCCCGAGGTTCGCGGAGTACTTACCGGTTGCGTACGTGTGTGAAGTCCATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAAACGCCGTCAGCCTGTACGACACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTACAAAAACAGGATACGGGCTCGATGTGACTTCTGTTACGGCGATGAACGATTGTTCGCCTGGGATTGGACTGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGAACAACAGCAGTTTGGCCAGCTTCATCCGAACGCTGAGGCACTGTGCTGCCAACACTGAAACATAATCACTATGAGTGCCTCCACAATGCCNTGCTAACATCTTGTGAAATGGCCACNGTGTNCCCTGTTTAACCNAAGCTGTGTCCATCACNTGGAGCGGAGGCAACACACTTATAGGTCCCCTCAACCCNATNCTTCCTCC]
[+] EMBL AL931800 [GAATCCCCGAGGTTCGCGGAGTACTTACCGGTTGCGTACGTGTGTGAAGTCCATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAAACGCCGTCAGCCTGTACGACACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTACAAAAACAGGATACGGGCTCGATGTGACTTCTGTTACGGCGATGAACGATTGTTCGCCTGGGATTGGACTGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGAACAACAGCAGTTTGGCCAGCTTCATCCGAACGCTGAGGCACTGTGCTGCCAACACTGAAACATAATCACTATGAGTGCCTCCACAATGCCNTGCTAACATCTTGTGAAATGGCCACNGTGTNCCCTGTTTAACCNAAGCTGTGTCCATCACNTGGAGCGGAGGCAACACACTTATAGGTCCCCTCAACCCNATNCTTCCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6429#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGAGTAACTTACCGGTTGCGTACCGTGTGT 60
consensus_6429#1 ------------GAATCCCCGAG-GTTCGCGGAGTA-CTTACCGGTTGCGTAC-GTGTGT 45
* ** * * ********* **************** ******
consensus_6429#0 GAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTG 120
consensus_6429#1 GAAGTCCATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTG 105
****** *****************************************************
consensus_6429#0 AAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGG 180
consensus_6429#1 AAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGG 165
********************************************** *** * *******
consensus_6429#0 TGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGC 240
consensus_6429#1 TGTCCCAGGAGTGTCTTA-AACGCCGTCAGCCTGTACGAC-ACACAATGCGTTGCTACGC 223
******** ********* ********************* *******************
consensus_6429#0 AACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATA 300
consensus_6429#1 AACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTA-CAAAAACAGGATA 282
********************************************** *************
consensus_6429#0 TGGCCTCGATTGTGACTTCTGTTACGGCGATGAA-GATTGTTCGC-TGGGATTGGAG-GT 357
consensus_6429#1 CGGGCTCGAT-GTGACTTCTGTTACGGCGATGAACGATTGTTCGCCTGGGATTGGACTGT 341
** ****** *********************** ********** ********** **
consensus_6429#0 GCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTT 417
consensus_6429#1 GCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGAACAACAGCAGTTTGGCCAGCTT 401
************************************** *********************
consensus_6429#0 CATCCGACCGCTGAG-CACTGCGCTGCCCAC---GAAACATAATCACTATGAGTGCATCC 473
consensus_6429#1 CATCCGAACGCTGAGGCACTGTGCTGCCAACACTGAAACATAATCACTATGAGTGCCTCC 461
******* ******* ***** ****** ** ********************** ***
consensus_6429#0 ACG-TGC-GTGCTA-CATCT-GTGAG-TGGCCACG-TGTTCC-TGTTTACCCGCGGCTGT 526
consensus_6429#1 ACAATGCCNTGCTAACATCTTGTGAAATGGCCACNGTGTNCCCTGTTTAACCNAAGCTGT 521
** *** ***** ***** **** ******* *** ** ****** ** *****
consensus_6429#0 GTCCATCAGTTGGAA-GGAGG-AAGACACTTTT-GCTCCCTACCACATGCTGCGTTTCAG 583
consensus_6429#1 GTCCATCACNTGGAGCGGAGGCAACACACTTATAGGTCCCCTCAACCCNATNCTTCCTCC 581
******** **** ***** ** ****** * * **** * ** * * *
consensus_6429#0 GGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAG 643
consensus_6429#1 ------------------------------------------------------------
consensus_6429#0 GAAGGATCCGCTGCCATGACCAGGAGAAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTA 703
consensus_6429#1 ------------------------------------------------------------
consensus_6429#0 CTTGCAGTTTCGCTTTCCACATTAGCAGCACCGTACAGCTGATGGA 749
consensus_6429#1 ----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||