These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 984 fasta sequence [TGAACCGATAAAGATTGCACTCCGGGCGAATTGCGAACAGTATCAGCCGCCTCCGCTGAGACACAATCCGTACGACGATCAGGAGCTTGTCATACTGGCCGGTATCGTGATCGGGTGTTTCGGGCTGCTACTCATCATACTGGCGATAGTGCTGTGGAGGAAATGTTTCCACGCGTCGTACCACGAGGCCGGCGATCAGCGACCATCGGAACGGACCGACCATAAACCGACGGTCCAATCGAATGGGTGGAAAACGTCCTGCGATTCGAACGGTATCGTGCAAACGTCGATACCCTCCGAGGAGTACATCAACGGACAGCAGCAGGCGATGATCGATCGGTTCCATCGCTAGGCCCGAGATGACTGATTAATGGTAGGCAATGGTTGCTGCCGGTTGATGCGCACGTACTGCACGGTCACGAACTGAGCCCCGGTGTCTCTGTGCTTGCAGTAACTCGACGGACGGCCGGTGAGCCTCGCTGGCGGGGACGGTTGGTATGCCAACGAAAATCGGGGCGCACCTGGCTGTTACGTATGGAAAGTACCTGACTAGGATAATTTAACGTAAGTCGCTTTAGGAAATGGCCGATATCTAGTGAAACACATCGAAACAGACTTGTTGCGACAGGGATGATGGAGCGTACCGTTCTGCCGCCAATCGTTCCTTCCGATGTATTTTGTTAGTTTATTTTTTCGTTGTATTTAAACATTTTTCTTTCAAACAGTTTTGAATATAGTTTTTTGTTGTAAAAGGAGAAAAAATAATAGCCTTGCTATTGTGTGTGTGTGGGAATTCAATCCAACACAGGATCGAATAACTTGATTCTACGTTCACTATCATCGTTATGTTTGTGTCATTCTTTGATTAAGCTTTGCGTTAACGTTATCACTTGCATTCTCAAGATGCAGCTCAGCTTTTTCTTAACCACGGGTTGAGCAAAGCATTCAAACCGGGAAGGAATGCAAACATTTTGCTGGTGCTTA] [+] EMBL BX617297 [TGAACCGATAAAGATTGCACTCCGGGCGAATTGCGAACAGTATCAGCCGCCTCCGCTGAGACACAATCCGTACGACGATCAGGAGCTTGTCATACTGGCCGGTATCGTGATCGGGTGTTTCGGGCTGCTACTCATCATACTGGCGATAGTGCTGTGGAGGAAATGTTTCCACGCGTCGTACCACGAGGCCGGCGATCAGCGACCATCGGAACGGACCGACCATAAACCGACGGTCCAATCGAATGGGTGGAAAACGTCCTGCGATTCGAACGGTATCGTGCAAACGTCGATACCCTCCGAGGAGTACATCAACGGACAGCAGCAGGCGATGATCGATCGGTTCCATCGCTAGGCCCGAGATGACTGATTAATGGTAGGCAATGGTTGCTGCCGGTTGATGCGCACGTACTGCACGGTCACGAACTGAGCCCCGGTGTCTCTGTGCTTGCAGTAACTCGACGGACGGCCGGTGAGCCTCGCTGGCGGGGACGGTTGGTATGCCAACGAAAATCGGGGCGCACCTGGCTGTTACGTATGGAAAGTACCTG ] [+] EMBL BX617893 [ AATGGGTGGAAAACGTCCTGCGATTCGAACGGTATCGTGCAAACGTCGATACCCTCCGAGGAGTACATCAACGGACAGCAGCAGGCGATGATCGATCGGTTCCATCGCTAGGCCCGAGATGACTGATTAATGGTAGGCAATGGTTGCTGCCGGTTGATGCGCACGTACTGCACGGTCACGAACTGAGCCCCGGTGTCTCTGTGCTTGCAGTAACTCGACGGACGGCCGGTGAGCCTCGCTGGCGGGGACGGTTGGTATGCCAACGAAAATCGGGGCGCACCTGGCTGTTACGTATGGAAAGTACCTGACTAGGATAATTTAACGTAAGTCGCTTTAGGAAATGGCCGATATCTAGTGAAACACATCGAAACAGACTTGTTGCGACAGGGATGATGGAGCGTACCGTTCTGCCGCCAATCGTTCCTTCCGATGTATTTTGTTAGTTTATTTTTTCGTTGTATTTAAACATTTTTCTTTCAAACAGTTTTGAATATAGTTTTTTGTTGTAAAAGGAGAAAAAATAATAGCCTTGCTATTGTGTGTGTGTGGGAATTCAATCCAACACAGGATCGAATAACTTGATTCTACGTTCACTATCATCGTTATGTTTGTGTCATTCTTTGATTAAGCTTTGCGTTAACGTTATCACTTGCATTCTCAAGATGCAGCTCA ] [+] EMBL BX608608 [ CGTCCTGCGATTCGAACGGTATCGTGCAAACTTTTATACCCTCCGAGGAGTACATCAACGGACAGCAGCAGGCGATGATCGATCGGTTCCATCGCTAGGCCCGAGATGACTGATTAATGGTAGGCAATGGTTGCTGCCGGTTGATGCGCACGTACTGCACGGTCACGAACTGAGCCCCGGTGTCTCTGTGCTTGCAGTAACTCGACGGACGGCCGGTGAGCCTCGCTGGCGGGGACGGTTGGTATGCCAACGAAAATCGGGGCGCACCAGGCTGTTACGTATGGAAAGTACCTGACTAGGATAATTTAACGTAAGTCGCTTTAGGAAATGGCCGATATCTAGTGAAACACATCGAGACAGACTTGTTGCGACAGGGATGATGGAGCGTACCGTTCTGCCGCCAATCGTTCCTTCCGATGTATTTTGTTATTATTTTGTTTCGTTGTATTTAAACATTTTTCTTTCAAACAGTTTGGAATATAGTTTTTTGTTGTAAAAGGAGAAAAAATAATAGCCTTGCTATTGTGTGTGTGTGGGAATTCAATCCAACACAGGCTCGAATAACTTGATTCTACGTTCACTATCATCATTATGTTTTTGTCATTCTGTGATTAAGCTTTGCGTTAACGTTATCACTTGCATTCTCAAGATACAGCTCAGCTTTTTCTTAACCACGGGTTGAGCAAAGCATTCAAACCGGGAAGGAATGCAAACATTTTGCTGGTGCTTA] consensusID : consensus_6433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence [GAGTACGACGATACGCACGAGATACGCATCTCGGCCAATGCGTCCATCGTCGAGACGTCGATGGTTATTCCCAACCTGACGACGAACAGTGCGTACGAGGTGAAGGTTCGTGGGGCGACCGTAAGCACGGTGAATCCGAAAAAGGTTGTCCTCGGCACCTATTGTGAACCGATAAAGATTGCACTCCGGGCGAATTGCGAACAGTATCAGCCGCCTCCGCTGAGACACAATCCGTACGTCGATCAGGAGCTTGTCATACTGGCCGGTATCGTGATCGGGTGTTTCGGGCTGCTGCTCATCATACTGGCGATAGTGCTGTGGAGGAAATGTTTCCACGCGTCGTACCACGAGGCCGGCGATCAGCGACCATCGGAACGGACCGACCATAAACCGACGGTCCAATCGAATGGGTGGAAAACGTCCTGCGATTCGAACGGTATCGTGCAAACGTCGATACCCTCCGAGGAGTACATCAACGGACAGCAGCAGGCGATGATCGATCGGTTCCATCGCTAGGCCCGAGATGACTGATTAATGTAACTCGACGGACGGCCGGTGAGCCTCGCTGGCGGGGACGGTTGGTATGCCAACGAAAATCGGGGCGCACCAGGCTGTTACGTATGGAAAGTACCTGACTAGGATAATTTAAC] [+] EMBL BX613907 [GAGTACGACGATACGCACGAGATACGCATCTCGGCCAATGCGTCCATCGTCGAGACGTCGATGGTTATTCCCAACCTGACGACGAACAGTGCGTACGAGGTGAAGGTTCGTGGGGCGACCGTAAGCACGGTGAATCCGAAAAAGGTTGTCCTCGGCACCTATTGTGAACCGATAAAGATTGCACTCCGGGCGAATTGCGAACAGTATCAGCCGCCTCCGCTGAGACACAATCCGTACGTCGATCAGGAGCTTGTCATACTGGCCGGTATCGTGATCGGGTGTTTCGGGCTGCTGCTCATCATACTGGCGATAGTGCTGTGGAGGAAATGTTTCCACGCGTCGTACCACGAGGCCGGCGATCAGCGACCATCGGAACGGACCGACCATAAACCGACGGTCCAATCGAATGGGTGGAAAACGTCCTGCGATTCGAACGGTATCGTGCAAACGTCGATACCCTCCGAGGAGTACATCAACGGACAGCAGCAGGCGATGATCGATCGGTTCCATCGCTAGGCCCGAGATGACTGATTAATGTAACTCGACGGACGGCCGGTGAGCCTCGCTGGCGGGGACGGTTGGTATGCCAACGAAAATCGGGGCGCACCAGGCTGTTACGTATGGAAAGTACCTGACTAGGATAATTTAAC] [+] EMBL BX613908 [ ACGCACGAGATACGCATCTCGGCCAATGCGTCCATCGTCGAGACGTCGATGGTTATTCCCAACCTGACGACGAACAGTGCGTACGAGGTGAAGGTTCGTGGGGCGACCGTAAGCACGGTGAATCCGAAAAAGGTTGTCCTCGGCACCTATTGTGAACCGATAAAGATTGCACT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6433#0 ------------------------------------------------------------ consensus_6433#1 GAGTACGACGATACGCACGAGATACGCATCTCGGCCAATGCGTCCATCGTCGAGACGTCG 60 consensus_6433#0 ------------------------------------------------------------ consensus_6433#1 ATGGTTATTCCCAACCTGACGACGAACAGTGCGTACGAGGTGAAGGTTCGTGGGGCGACC 120 consensus_6433#0 --------------------------------------------TGAACCGATAAAGATT 16 consensus_6433#1 GTAAGCACGGTGAATCCGAAAAAGGTTGTCCTCGGCACCTATTGTGAACCGATAAAGATT 180 **************** consensus_6433#0 GCACTCCGGGCGAATTGCGAACAGTATCAGCCGCCTCCGCTGAGACACAATCCGTACGAC 76 consensus_6433#1 GCACTCCGGGCGAATTGCGAACAGTATCAGCCGCCTCCGCTGAGACACAATCCGTACGTC 240 ********************************************************** * consensus_6433#0 GATCAGGAGCTTGTCATACTGGCCGGTATCGTGATCGGGTGTTTCGGGCTGCTACTCATC 136 consensus_6433#1 GATCAGGAGCTTGTCATACTGGCCGGTATCGTGATCGGGTGTTTCGGGCTGCTGCTCATC 300 ***************************************************** ****** consensus_6433#0 ATACTGGCGATAGTGCTGTGGAGGAAATGTTTCCACGCGTCGTACCACGAGGCCGGCGAT 196 consensus_6433#1 ATACTGGCGATAGTGCTGTGGAGGAAATGTTTCCACGCGTCGTACCACGAGGCCGGCGAT 360 ************************************************************ consensus_6433#0 CAGCGACCATCGGAACGGACCGACCATAAACCGACGGTCCAATCGAATGGGTGGAAAACG 256 consensus_6433#1 CAGCGACCATCGGAACGGACCGACCATAAACCGACGGTCCAATCGAATGGGTGGAAAACG 420 ************************************************************ consensus_6433#0 TCCTGCGATTCGAACGGTATCGTGCAAACGTCGATACCCTCCGAGGAGTACATCAACGGA 316 consensus_6433#1 TCCTGCGATTCGAACGGTATCGTGCAAACGTCGATACCCTCCGAGGAGTACATCAACGGA 480 ************************************************************ consensus_6433#0 CAGCAGCAGGCGATGATCGATCGGTTCCATCGCTAGGCCCGAGATGACTGATTAATGGTA 376 consensus_6433#1 CAGCAGCAGGCGATGATCGATCGGTTCCATCGCTAGGCCCGAGATGACTGATTAATG--- 537 ********************************************************* consensus_6433#0 GGCAATGGTTGCTGCCGGTTGATGCGCACGTACTGCACGGTCACGAACTGAGCCCCGGTG 436 consensus_6433#1 ------------------------------------------------------------ consensus_6433#0 TCTCTGTGCTTGCAGTAACTCGACGGACGGCCGGTGAGCCTCGCTGGCGGGGACGGTTGG 496 consensus_6433#1 ---------------TAACTCGACGGACGGCCGGTGAGCCTCGCTGGCGGGGACGGTTGG 582 ********************************************* consensus_6433#0 TATGCCAACGAAAATCGGGGCGCACCTGGCTGTTACGTATGGAAAGTACCTGACTAGGAT 556 consensus_6433#1 TATGCCAACGAAAATCGGGGCGCACCAGGCTGTTACGTATGGAAAGTACCTGACTAGGAT 642 ************************** ********************************* consensus_6433#0 AATTTAACGTAAGTCGCTTTAGGAAATGGCCGATATCTAGTGAAACACATCGAAACAGAC 616 consensus_6433#1 AATTTAAC---------------------------------------------------- 650 ******** consensus_6433#0 TTGTTGCGACAGGGATGATGGAGCGTACCGTTCTGCCGCCAATCGTTCCTTCCGATGTAT 676 consensus_6433#1 ------------------------------------------------------------ consensus_6433#0 TTTGTTAGTTTATTTTTTCGTTGTATTTAAACATTTTTCTTTCAAACAGTTTTGAATATA 736 consensus_6433#1 ------------------------------------------------------------ consensus_6433#0 GTTTTTTGTTGTAAAAGGAGAAAAAATAATAGCCTTGCTATTGTGTGTGTGTGGGAATTC 796 consensus_6433#1 ------------------------------------------------------------ consensus_6433#0 AATCCAACACAGGATCGAATAACTTGATTCTACGTTCACTATCATCGTTATGTTTGTGTC 856 consensus_6433#1 ------------------------------------------------------------ consensus_6433#0 ATTCTTTGATTAAGCTTTGCGTTAACGTTATCACTTGCATTCTCAAGATGCAGCTCAGCT 916 consensus_6433#1 ------------------------------------------------------------ consensus_6433#0 TTTTCTTAACCACGGGTTGAGCAAAGCATTCAAACCGGGAAGGAATGCAAACATTTTGCT 976 consensus_6433#1 ------------------------------------------------------------ consensus_6433#0 GGTGCTTA 984 consensus_6433#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||