These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6434#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 876 fasta sequence [ATTTCCGACCAGTTCCAAATTCCACCGCTGGAACCGCTCGCCCTCGCGACGGTCAACATGGACCGGGGGGCCGAGCTGAAGGCCACCTTCAGCGAGCTGCTCGTGTCGGGGCCGAGCAAGTTCAAGATCGACAACTTGAAGGTCAACATCGAGAAGCTGATCTTCGACTTTAACATCTTCCTGCCGAAGCTGTCCTTCAAGGGAAAGTACGATCTGAAGATTAAGCTGCTGCTGCTTAACATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCTGCTGTGCGAAAAGTACGCCAAGGACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATTGGGTGTCTGTTGGTTTGTGTCGTCCTGGGAAGGAGAAGGAGTGAGATGATCTGTGATTCTGGTGCGTACGAGATGTCGCATCTTGGTTTGGAGGCTGCGTACCCACAAAAAAGCGCAGCGTTTTACGCGTTTTAAAATGTACCTTTTTGTCTAGGTCTGTAGCTCTAGTAAGACACGGTGTAACCCGTGTGTCTGTGTGTCTGTAGTACGGTATTCAATTACTGGGAGGGTAATAAGTAATAAAAAACACAATGGTTGTTTTACAATAAAGCTTAGTGGACGCTCGGAA] [+] EMBL BX617476 [ATTTCCGACCAGTTCCAAATTCCACCGCTGGAACCGCTCGCCCTCGCGACGGTCAACATGGACCGGGGGGCCGAGCTGAAGGCCACCTTCAGCGAGCTGCTCGTGTCGGGGCCGAGCAAGTTCAAGATCGACAACTTGAAGGTCAACATCGAGAAGCTGATCTTCGACTTTAACATCTTCCTGCCGAAGCTGTCCTTCAAGGGAAAGTACGATCTGAAGATTAAGCTGCTGCTGCTTAACATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCTGCTGTGCGAAAAGTACGCCAAGGACG ] [+] EMBL BX618648 [ CGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCTGCTGTGCGAAAAGTACGCCAAGGACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATTGGGTGTCTGTTGGTTTGTGTCGTCCTGGGAAGGAGAAGGAGTGAGATGATCTGTGATTCTGGTGCGTACGAGATGTCGCATCTTGGTTTGGAGGCTGCGTACCCACAAAAAAGCGCAGCGTTTTACGCGTTTTAAAA ] [+] EMBL BX609286 [ GAAGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATTGGGTGTCTGTTGGTTTGTGTCGTCCTGGGAAGGAGAAGGAGTGAGATGATCTGTGATTCTGGTGCGTACGAGATGTCGCATCTTGTTTTGGAGGCTGCGTACCCACAAAAAAGCGCAGCGTTTTACGCGTTTAAAAATGTACCTTTTTGTCTAGGTCTGTAGCTCTAGTAAGACACGGTGTAACCCGTGTGTCTGTGTGTCTGTAGTACGGTATTCAATTACTGGGAGGGTAATAAGTAATAAAAAACACAATGGTTGTTTTACAATAAAGCTTAGTGGACGCTCGGAA] consensusID : consensus_6434#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence [CAAGAATCCCGNGGTTAAAGTACGCCAAGGGACGGCAAGGAGTACGTGCGCGTGTGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGTCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATNTGGGTGTCTAGTAAGGTCANGTAGTCAGTCCTGGGAAGGAGNACAGTGAGTGAGATGATCTGTGATTCTGGTTGCGGTACGAGCATGTCGCCATCTTGCGGCATTCGGAGGCTGCGTTACCCACCAAAAACAAGCGCACGNCGGTATATNACCGACGTTTAACANACATTGTACCCTTTACATAGTCCTAGGGTCTGTAGCCTCTTAGATAAGGAACACCGNGTGTAACCCGATGTGTCTTGTAGNTAGTCTTGATAGATACCGGGNNACTTTCACAGTTTTAACCTTCGGNGGGCAGAGGGGTTNAAATTNAAGGTTACACCACACCNCACAACCACACCCNATTGGGGCTCATAGNANATTTACCAAACTTCACACAGGCCCTTCTCACANNTTGANAAACGCCTNCCGGGCGACAAAAGCCNCGTGACAGGTACTTACACANANCAGCAACACACACANACAGCACCCAAACAATCCTTCAGCNCAACACCG] [+] EMBL AL692257 [CAAGAATCCCGNGGTTAAAGTACGCCAAGGGACGGCAAGGAGTACGTGCGCGTGTGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGTCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATNTGGGTGTCTAGTAAGGTCANGTAGTCAGTCCTGGGAAGGAGNACAGTGAGTGAGATGATCTGTGATTCTGGTTGCGGTACGAGCATGTCGCCATCTTGCGGCATTCGGAGGCTGCGTTACCCACCAAAAACAAGCGCACGNCGGTATATNACCGACGTTTAACANACATTGTACCCTTTACATAGTCCTAGGGTCTGTAGCCTCTTAGATAAGGAACACCGNGTGTAACCCGATGTGTCTTGTAGNTAGTCTTGATAGATACCGGGNNACTTTCACAGTTTTAACCTTCGGNGGGCAGAGGGGTTNAAATTNAAGGTTACACCACACCNCACAACCACACCCNATTGGGGCTCATAGNANATTTACCAAACTTCACACAGGCCCTTCTCACANNTTGANAAACGCCTNCCGGGCGACAAAAGCCNCGTGACAGGTACTTACACANANCAGCAACACACACANACAGCACCCAAACAATCCTTCAGCNCAACACCG] consensusID : consensus_6434#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence [GGCAGAATCCGCACGAGNGTGAAGATTAAGCAGCAGCAGCTTAATATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCTGCTGTGCGAAAAGTACGCCAAGGACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATTGGGTGTCTGTTGGTTTGTGTCGTCCTGGGAAGGAGAAGGAGTGAGATGATCTGTGATTCTGGTGCGTACGAGATGTCGCATCTTGGTTTGGAGGCTGCGTACCCACAAAAAAGCGCAGCGTTTTACGCGTTTAAAAATGTACCTTTTNGTCTAGGTCTGTAGCTCTAGTAAGACACGGTGTAACCCGTGTGTCTGTGTGTCTGTAGTACGGTATTCAATTACTTGGGGAAGGGGNTAATTTACAGGTAAATTACAGAGAGAGAGCACAAATGGGGTTGGTGTTTGAACAAATTAGAAGAANNAGAGCACAGAGAGNGANTCAACCAGGGCCATTGTTGGCCGGACCGCAAAAGCGTTAA] [+] EMBL BX468260 [GGCAGAATCCGCACGAGNGTGAAGATTAAGCAGCAGCAGCTTAATATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCTGCTGTGCGAAAAGTACGCCAAGGACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATTGGGTGTCTGTTGGTTTGTGTCGTCCTGGGAAGGAGAAGGAGTGAGATGATCTGTGATTCTGGTGCGTACGAGATGTCGCATCTTGGTTTGGAGGCTGCGTACCCACAAAAAAGCGCAGCGTTTTACGCGTTTAAAAATGTACCTTTTNGTCTAGGTCTGTAGCTCTAGTAAGACACGGTGTAACCCGTGTGTCTGTGTGTCTGTAGTACGGTATTCAATTACTTGGGGAAGGGGNTAATTTACAGGTAAATTACAGAGAGAGAGCACAAATGGGGTTGGTGTTTGAACAAATTAGAAGAANNAGAGCACAGAGAGNGANTCAACCAGGGCCATTGTTGGCCGGACCGCAAAAGCGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6434#0 ATTTCCGACCAGTTCCAAATTCCACCGCTGGAACCGCTCGCCCTCGCGACGGTCAACATG 60 consensus_6434#2 ------------------------------------------------------------ consensus_6434#1 ------------------------------------------------------------ consensus_6434#0 GACCGGGGGGCCGAGCTGAAGGCCACCTTCAGCGAGCTGCTCGTGTCGGGGCCGAGCAAG 120 consensus_6434#2 ------------------------------------------------------------ consensus_6434#1 ------------------------------------------------------------ consensus_6434#0 TTCAAGATCGACAACTTGAAGGTCAACATCGAGAAGCTGATCTTCGACTTTAACATCTTC 180 consensus_6434#2 ------------------------------------------------------------ consensus_6434#1 ------------------------------------------------------------ consensus_6434#0 CTGCCGAAGCTGTCCTTCAAGGGAAAGTACGATC-TGAAGATTAAGCTGCTGCTGCTTAA 239 consensus_6434#2 ----------------GGCAGAATCCGCACGAGNGTGAAGATTAAGCAGCAGCAGCTTAA 44 consensus_6434#1 ------------------------------------------------------------ consensus_6434#0 CATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCT 299 consensus_6434#2 TATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCT 104 consensus_6434#1 -----------------------------------------------------CAAGAAT 7 * * consensus_6434#0 GCTGTGCGAAAAGTACGCCAAGG-ACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGG 358 consensus_6434#2 GCTGTGCGAAAAGTACGCCAAGG-ACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGG 163 consensus_6434#1 CCCGNGGTTAAAGTACGCCAAGGGACGGCAAGGAGTACGTGCGCGTGT-GAAGCTGGTGG 66 * * * ************** *********************** *********** consensus_6434#0 TGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCG 418 consensus_6434#2 TGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCG 223 consensus_6434#1 TGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGTCGATCCCG 126 *************************************************** ******** consensus_6434#0 TCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGC 478 consensus_6434#2 TCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGC 283 consensus_6434#1 TCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGC 186 ************************************************************ consensus_6434#0 TGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCA 538 consensus_6434#2 TGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCA 343 consensus_6434#1 TGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCA 246 ************************************************************ consensus_6434#0 TGCAG-CAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATT-GGGTGTCT- 595 consensus_6434#2 TGCAG-CAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATT-GGGTGTCT- 400 consensus_6434#1 TGCAGGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATNTGGGTGTCTA 306 ***** ******************************************* ******** consensus_6434#0 GTTGGTTTGTGTCGTC----CTGGGAAGGAGAAG---GAGTGAGATGATCTGTGATTCTG 648 consensus_6434#2 GTTGGTTTGTGTCGTC----CTGGGAAGGAGAAG---GAGTGAGATGATCTGTGATTCTG 453 consensus_6434#1 GTAAGGTCANGTAGTCAGTCCTGGGAAGGAGNACAGTGAGTGAGATGATCTGTGATTCTG 366 ** * * ** *** *********** * *********************** consensus_6434#0 GT-GCG-TACGAG-ATGTCGC-ATCTTG----GTTTGGAGGCTGCGT-ACCCACAAAAAA 699 consensus_6434#2 GT-GCG-TACGAG-ATGTCGC-ATCTTG----GTTTGGAGGCTGCGT-ACCCACAAAAAA 504 consensus_6434#1 GTTGCGGTACGAGCATGTCGCCATCTTGCGGCATTCGGAGGCTGCGTTACCCACCAAAAA 426 ** *** ****** ******* ****** ** *********** ****** ***** consensus_6434#0 -----GCGCAGCGTTTTACG-----CGTTTTAAAA----TGTACCTTTTT----GTCT-- 739 consensus_6434#2 -----GCGCAGCGTTTTACG-----CGTTTAAAAA----TGTACCTTTTN----GTCT-- 544 consensus_6434#1 CAAGCGCACGNCGGTATATNACCGACGTTTAACANACATTGTACCCTTTACATAGTCCTA 486 ** * ** * ** ***** * * ****** *** *** consensus_6434#0 AGGTCTGTAGCTCT-------AGTAAGACACGGTGTAACCCG-TGTGTCT----GTGTGT 787 consensus_6434#2 AGGTCTGTAGCTCT-------AGTAAGACACGGTGTAACCCG-TGTGTCT----GTGTGT 592 consensus_6434#1 GGGTCTGTAGCCTCTTAGATAAGGAACACCGNGTGTAACCCGATGTGTCTTGTAGNTAGT 546 ********** ** ** ** ********** ******* * ** consensus_6434#0 CT------GTAGTACGGTATT----CAATTA----CT--GGGAGGGTAATAAGTAATAA- 830 consensus_6434#2 CT------GTAGTACGGTATT----CAATTA----CTTGGGGAAGGGGNTAATTTACAGG 638 consensus_6434#1 CTTGATAGATACCGGGNNACTTTCACAGTTTTAACCTTCGGNGGGCAGAGGGGTTNAAAT 606 ** ** * * * ** ** ** ** * * * consensus_6434#0 -AAAACACAATGGTTGTTTTACAATAAAGCTTAGTGGACGCTCGGAA------------- 876 consensus_6434#2 TAAATTACAGAGAGAGAGC-ACAAATGGGGTTGGTGTTTGAACAAATTAGAAGAANNAGA 697 consensus_6434#1 TNAAGGTTACACCACACCNCACAACCACACCCNATTGGGGCTCATAGNANATTTACCAAA 666 ** * **** * * * * consensus_6434#0 ------------------------------------------------------------ consensus_6434#2 GCACAGAGAGNGANTCA----ACCAGGGCCATTGTTGGCCGGACCGCAAAAGCGTTAA-- 751 consensus_6434#1 CTTCACACAGGCCCTTCTCACANNTTGANAAACGCCTNCCGGGCGACAAAAGCCNCGTGA 726 consensus_6434#0 ------------------------------------------------------------ consensus_6434#2 ------------------------------------------------------------ consensus_6434#1 CAGGTACTTACACANANCAGCAACACACACANACAGCACCCAAACAATCCTTCAGCNCAA 786 consensus_6434#0 ----- consensus_6434#2 ----- consensus_6434#1 CACCG 791 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||