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Anopheles gambiae
cluster # 6435 cluster # 6435       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6435#0 length = 1161 sequences # 4  
consensus_6435#1 length = 564 sequences # 1  

consensusID : consensus_6435#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1161
fasta sequence
                              [CCTGTTGCTGTGTGACGTCATCGCCTGGATAGTGATATTCGGTTGCATCGCCAAAGGGGTGCAATCGGTCGGTAAGGTCGTTTACTGTACTGCCACCTTTCCGTTCGCGATCCTGGCGGTGTTACTTGTGCGCGGTATCACGCTTCCCGGTGCGCTGGAGGGCATCAAGTTCTACATAATGCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCG-AGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATAC-TTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTCACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTTCTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGATCTACGGGTGTGAGCAGTTCGTGCGCGACGTCGAGTTCATGATCGATCGCAAGGTGGAACGGTTTTGGATAGTTTCATGGAAGTACATCACACCGATCGTGCTGACTTTTATTTTCACTACAACGATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTATTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTTCAGTGTTTGCGTCTTACAAGCTCCTTCACACGAAGGGTTCATTGACAAAGCGTTTTAAAACCCAACTCAAAGCACAGGATTGGGGCCCTGCCGATGATGAACTGCGTGCATTGTGGAGTGACAGTGTTGCATTACGTTCAGTGCGTTAAATAAACGATTT]

[+] EMBL BX623930             [CCTGTTGCTGTGTGACGTCATCGCCTGGATAGTGATATTCGGTTGCATCGCCAAAGGGGTGCAATCGGTCGGTAAGGTCGTTTACTGTACTGCCACCTTTCCGTTCGCGATCCTGGCGGTGTTACTTGTGCGCGGTATCACGCTTCCCGGTGCGCTGGAGGGCATCAAGTTCTACATAATGCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAAGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTANGATACTTTTTCACATCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM639935             [                                                                                                                                                                     ccgGTTCTACATAATGCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCG AGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATAC TTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTCACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTTCTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGATCTACGGGTGTGAGCAGTTCGT                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX610135             [                                                                                                                                                                                                                                                                                                                                    TCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATAC TTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTCACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTTCTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGATCTACGGGTGTGAGCAGTTCGTGCGCGACGTCGAGTTCATGATCGATCGCAAGGTGGAACGGTTTTGGATAGTTTCATGGAAGTACATCACACCGATCGTGCTGACTTTTATTTTCACTACAACGATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTATTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTTCAGTGTTTGCG                                                                                                                                                     ]
[+] EMBL BX617150             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTATTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTCCAGTGTTTGCGTCTTACAAGCTCCTTCACACGAAGGGTTCATTGACAAAGCGTTTTAAAACCCAACTCAAAGCACAGGATTGGGGCCCTGCCGATGATGAACTGCGTGCATTGTGGAGTGACAGTGTTGCATTACGTTCAGTGCGTTAAATAAACGATTT]


>consensus_6435#0 CCTGTTGCTGTGTGACGTCATCGCCTGGATAGTGATATTCGGTTGCATCGCCAAAGGGGT GCAATCGGTCGGTAAGGTCGTTTACTGTACTGCCACCTTTCCGTTCGCGATCCTGGCGGT GTTACTTGTGCGCGGTATCACGCTTCCCGGTGCGCTGGAGGGCATCAAGTTCTACATAAT GCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTT CTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAA AAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACT GGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGT AGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAG TATGCTTCCGCTGTCACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGG CGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACC GAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTTCTTCTTTTCCTGCT CTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTC GGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGATCTA CGGGTGTGAGCAGTTCGTGCGCGACGTCGAGTTCATGATCGATCGCAAGGTGGAACGGTT TTGGATAGTTTCATGGAAGTACATCACACCGATCGTGCTGACTTTTATTTTCACTACAAC GATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTATTGG AGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTTCAGTGTTTGCGTCTTACAA GCTCCTTCACACGAAGGGTTCATTGACAAAGCGTTTTAAAACCCAACTCAAAGCACAGGA TTGGGGCCCTGCCGATGATGAACTGCGTGCATTGTGGAGTGACAGTGTTGCATTACGTTC AGTGCGTTAAATAAACGATTT



consensusID : consensus_6435#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence
                              [CCCCGAGTTNAATGCCCAGTGGAGCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTACACCGTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTANNATACTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATT]

[+] EMBL AL692247             [CCCCGAGTTNAATGCCCAGTGGAGCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTACACCGTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTANNATACTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATT]


>consensus_6435#1 CCCCGAGTTNAATGCCCAGTGGAGCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCG ATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTAT AATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGT ACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACA GGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCG GAAGCGATCAGTATGCTTCCGCTGTACACCGTGTGGGCCTGTCTGTTCTTCAGTATGCTA TTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATG GACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTANNATA CTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTG CTCGACTGGTATTCGGGGTCCATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6435#0      CCTGTTGCTGTGTGACGTCATCGCCTGGATAGTGATATTCGGTTGCATCGCCAAAGGGGT 60
consensus_6435#1      ------------------------------------------------------------
                                                                                  

consensus_6435#0      GCAATCGGTCGGTAAGGTCGTTTACTGTACTGCCACCTTTCCGTTCGCGATCCTGGCGGT 120
consensus_6435#1      ------------------------------------------------------------
                                                                                  

consensus_6435#0      GTTACTTGTGCGCGGTATCACGCTTCCCGGTGCGCTGGAGGGCATCAAGTTCTACATAAT 180
consensus_6435#1      ------------------------------------------CCCCGAGTTN-----AAT 13
                                                                *  * ****      ***

consensus_6435#0      GCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTT 240
consensus_6435#1      GCCC-AGTGGAGC-AGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTT 71
                      **** ******** **********************************************

consensus_6435#0      CTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAA 300
consensus_6435#1      CTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAA 131
                      ************************************************************

consensus_6435#0      AAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACT 360
consensus_6435#1      AAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACT 191
                      ************************************************************

consensus_6435#0      GGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGT 420
consensus_6435#1      GGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGT 251
                      ************************************************************

consensus_6435#0      AGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAG 480
consensus_6435#1      AGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAG 311
                      ************************************************************

consensus_6435#0      TATGCTTCCGCTGT-CACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCG 539
consensus_6435#1      TATGCTTCCGCTGTACACCG-TGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCG 370
                      ************** ***** ***************************************

consensus_6435#0      GCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTAC 599
consensus_6435#1      GCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTAC 430
                      ************************************************************

consensus_6435#0      CGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTT---CTTCTTTTCC 656
consensus_6435#1      CGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTANNATACTTCTTTTCC 490
                      ********************************************      **********

consensus_6435#0      TGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGT 716
consensus_6435#1      TGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGT 550
                      ************************************************************

consensus_6435#0      ATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGA 776
consensus_6435#1      ATTCGGGGTCCATT---------------------------------------------- 564
                      **************                                              

consensus_6435#0      TCTACGGGTGTGAGCAGTTCGTGCGCGACGTCGAGTTCATGATCGATCGCAAGGTGGAAC 836
consensus_6435#1      ------------------------------------------------------------
                                                                                  

consensus_6435#0      GGTTTTGGATAGTTTCATGGAAGTACATCACACCGATCGTGCTGACTTTTATTTTCACTA 896
consensus_6435#1      ------------------------------------------------------------
                                                                                  

consensus_6435#0      CAACGATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTA 956
consensus_6435#1      ------------------------------------------------------------
                                                                                  

consensus_6435#0      TTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTTCAGTGTTTGCGTCTT 1016
consensus_6435#1      ------------------------------------------------------------
                                                                                  

consensus_6435#0      ACAAGCTCCTTCACACGAAGGGTTCATTGACAAAGCGTTTTAAAACCCAACTCAAAGCAC 1076
consensus_6435#1      ------------------------------------------------------------
                                                                                  

consensus_6435#0      AGGATTGGGGCCCTGCCGATGATGAACTGCGTGCATTGTGGAGTGACAGTGTTGCATTAC 1136
consensus_6435#1      ------------------------------------------------------------
                                                                                  

consensus_6435#0      GTTCAGTGCGTTAAATAAACGATTT 1161
consensus_6435#1      -------------------------
                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)