These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 978 fasta sequence [ATCGCCCGAGGGCAAAGCTCCATTTGTTTCAACCTCGAACAGCAATAGGATGATGATTGAGGTGAAGCAACGCTTGTTGTTATGAAAGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCT-GGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGA-TGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTCGACGAACCACCGTCCTACTCGGAGAGCATGGAGGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTAAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAAGCTCGCCACCGAGCTGAACCGCAATGCGATCTTAACGGACGTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATGAAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCATTACCATCGTCACCCTTCAATCCCTTCAACCTCCGTCCGCCGCGGACATCTATAGTTTTAGCTTGTAAGCGTTTACAGCCTGTAAGACTGCCGCCGCACATTCTGTGGATATGCTCGAAAGTTCGAAACTTGTGTTGCAGTAAAACAAAATTGGTAGTTAAAATAATCAAACTATAATCCCCAAAAAGCAAATACACACAGTACACATTCGTGTCTTTCTTACCGTAACCATCAGCGCTAACGGACCGCCGTAGATGATGAGACAGAAGCCGCTGATCATAATCATGGTAAAGATGCCACGTATCACCCAGTTCTTCCATCTGAAAGGGGGGAAGGAGGAA] [+] EMBL AL931765 [ATCGCCCGAGGGCAAAGCTCCATTTGTTTCAACCTCGAACAGCAATAGGATGATGATTGAGGTGAAGCAACGCTTGTTGTTATGAAAGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCT GGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACA GGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGA TGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTGGACGAACCGCC TCCTACTCGGAGAGTATGGAAGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTCAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAA ] [+] EMBL CNS08ECL [ TCAACCTCGAACAGCAATAGGATGATGATTGAGGTGAAGCAACGCTTGTTGTTATGAAAGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCT GGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGATTGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTCGACGAACCACCGTCCTACTCGGAGAGCATGGAGGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTAAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAAGCTCGCCACCGAGCTGAACCGCAATGCGATCTTAACGGACGTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATGAAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCATTACCATCGTCACCCTTCAATCCCTTCAACCTCCGTCCGCCGCGGACATCTATAGTTTTAGCTTGTAAGCGTTTACAGCCTGTAAGACTGCCGCCGCACATTCTGTGGATATGCTCGAAAGTTCGAAACTTGTGTTGCAGTAAAACAAAATTGGTAGTTAAAATAATCAAACTATAATCCCCAAAAAGCAAATACACACAGTACACATTCGTGTCTTTCTTACCGTAACCATCAGCGCTAACGGACCGCCGTAGATGATGAGACAGAAGCCGCTGATCATAATCATGGTAAAGATGCCACGTATCACCCAGTTCTTCCATCTGAAAGGGGGGAA ] [-] EMBL CNS08ECM [ ACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCTGGGTG TGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTG TGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGA TGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTCGACGAACCACCGTCCTACTCGGAGAGCATGGAGGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTAAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAAGCTCGCCACCGAGCTGAACCGCAATGCGATCTTAACGGACGTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATGAAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCATTACCATCGTCACCCTTCAATCCCTTCAACCTCCGTCCGCCGCGGACATCTATAGTTTTAGCTTGTAAGCGTTTACAGCCTGTAAGACTGCCGCCGCACATTCTGTGGATATGCTCGAAAGTTCGAAACTTGTGTTGCAGTAAAACAAAATTGGTAGTTAAAATAATCAAACTATAATCCCCAAAAAGCAAATACACACAGTACACATTCGTGTCTTTCTTACCGTAACCATCAGCGCTAACGGACCGCCGTAGATGATGAGACAGAAGCCGCTGATCATAATCATGGTAAAGATGCCACGTATCACCCAGTTCTTCCATCTGAAAGGGGGGAAGGAGGAA] consensusID : consensus_6437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence [TCGGNCACGAGGTGNNAAACCCACACATCGCCGCCCGCACTTGAGACGGTCCAGCTCGTATCCGACACTGCTGTCCAGCAAACGCGCACGGAAGCAACAGCTGCGTCCGGTTCGATCGGAAAGTGATTTGCGTGTTCCAGGCAGTGTCGATCGTACTGGTGGTGCTACTGGTGGTGGTGGTGATGCTAGTGCCCTCCTGCCCGGAAGTGGGAACAGTTTCAGCACCAACAATCTCTACCTCGGTGCCAAATCGGAGGTGTGTTTGAAGACGCTCGCCGTGAAGAACACGGTAGTGCCAGCAGTAGGACTCCTCCGACCTGTCAGTAGTGGTGTGATGCTGCAATCGGCGCCGCCACTCGGGTCGGGTGGTAGTGTGCGGAGCGGTGGCACCGGATCGAGCACCGGATCACGCCGGCTGTACGAAAGCCGCCGGACGTCGGAGCTGAGCAGCAGCGATCTTGGCCCGAGCAAGTCCGAGATGCACCTGAAGGTGAACAGCGGCGCCGTGCGCATTCCGATCGTCGGCTACGAGGTGATGGAGGAGCGGGCCCGCTTCACGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTTGAGGGCAGCTCTACCCGCACTGTGGTTCTGGTGCTGCCGCGGAAAGGAACAATTGGGTTCCGGGNCGGAACCACACTTTTAGCACAGCGGGGTTCATCGAACAACCCGGNATACACGGGGGCNTGACAGACACNTTCATCTGAACACGAGAACTTGTTCGAACCAATGGGGATGCGCCCGTGCCAAGCCGGTCCGGGACTTTTTCTGCCTNGGAACGACCGGGCCTCCTTACTNGG] [+] EMBL BX469549 [TCGGNCACGAGGTGNNAAACCCACACATCGCCGCCCGCACTTGAGACGGTCCAGCTCGTATCCGACACTGCTGTCCAGCAAACGCGCACGGAAGCAACAGCTGCGTCCGGTTCGATCGGAAAGTGATTTGCGTGTTCCAGGCAGTGTCGATCGTACTGGTGGTGCTACTGGTGGTGGTGGTGATGCTAGTGCCCTCCTGCCCGGAAGTGGGAACAGTTTCAGCACCAACAATCTCTACCTCGGTGCCAAATCGGAGGTGTGTTTGAAGACGCTCGCCGTGAAGAACACGGTAGTGCCAGCAGTAGGACTCCTCCGACCTGTCAGTAGTGGTGTGATGCTGCAATCGGCGCCGCCACTCGGGTCGGGTGGTAGTGTGCGGAGCGGTGGCACCGGATCGAGCACCGGATCACGCCGGCTGTACGAAAGCCGCCGGACGTCGGAGCTGAGCAGCAGCGATCTTGGCCCGAGCAAGTCCGAGATGCACCTGAAGGTGAACAGCGGCGCCGTGCGCATTCCGATCGTCGGCTACGAGGTGATGGAGGAGCGGGCCCGCTTCACGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTTGAGGGCAGCTCTACCCGCACTGTGGTTCTGGTGCTGCCGCGGAAAGGAACAATTGGGTTCCGGGNCGGAACCACACTTTTAGCACAGCGGGGTTCATCGAACAACCCGGNATACACGGGGGCNTGACAGACACNTTCATCTGAACACGAGAACTTGTTCGAACCAATGGGGATGCGCCCGTGCCAAGCCGGTCCGGGACTTTTTCTGCCTNGGAACGACCGGGCCTCCTTACTNGG] consensusID : consensus_6437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [GATCGTCGGCTACGAGGTGATGGAGGAGCGGGCCCGCTTCACGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGATGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTGGACGAACCGCCCTCCTACTCGGAGAGTATGGAAGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTCAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAAGCTCGCCACCGAGCTGAACCGCAATGCGATCTTAACTGACGTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATGAAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCAT] [+] EMBL BX623897 [GATCGTCGGCTACGAGGTGATGGAGGAGCGGGCCCGCTTCACGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGATGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTGGACGAACCGCCCTCCTACTCGGAGAGTATGGAAGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTCAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAAGCTCGCCACCGAGCTGAACCGCAATGCGATCTTAACTGACGTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATGAAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6437#0 ATCGCCCGAGGGCAAAGCTCCATTTGTTTCAACCTCGAACAGCAATAGGATGATGATTGA 60 consensus_6437#2 ------------------------------------GATCGTCGGCTACGAGGTGATGGA 24 consensus_6437#1 --------------------------------------TCGGNCACGAGGTGNNAAACCC 22 * * * consensus_6437#0 GGTGAAGCAACGCTTGTTGTTATGAAAGATATTCAAACTGCGCATCGAAAACAGCATTTC 120 consensus_6437#2 GGAGCGGGCCCGCTTC---------ACGATATTCAAACTGCGCATCGAAAACAGCATTTC 75 consensus_6437#1 A-CACATCGCCGCCCGCACTT----GAGACGGTCCAGCT-CGTATCCGACACTGCTGTCC 76 *** ** ** * ** ** *** * ** ** * * consensus_6437#0 GCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCT 180 consensus_6437#2 GCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCT 135 consensus_6437#1 A-----------GCAAACGC-GCACGGAAGCAACAGCTGCGTCCGGTTCGATCGGAAAGT 124 ** ** ** * * ** * ** ****** * * ** * consensus_6437#0 GAGGCAGCTCTACCCG-CACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACA 239 consensus_6437#2 GAGGCAGCTCTACCCG-CACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACA 194 consensus_6437#1 GATTTGCGTGTTCCAGGCAGTGTCGATCGTACTGGTGGTGCTACTGGTGGT--GGTGGTG 182 ** * * ** * ** *** * * * * * * **** ** * consensus_6437#0 ACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCA--GACGTTCATCGACAC 297 consensus_6437#2 ACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCA--GACGTTCATCGACAC 252 consensus_6437#1 ATGCTAGTGCCCTCCTGCCCGG-AAGTGGGAACAGTTTCAGCACCAACAATCTCTACCTC 241 * *** * * * ** ** ** **** * *** ** ** * * consensus_6437#0 GATCCTG--TCGGACGATGGGATGCGCACGT--GCCAGGCGGTGCGGGACTTTTTCTGCC 353 consensus_6437#2 GATCCTG--TCGGACGATGGGATGCGCACGT--GCCAGGCGGTGCGGGACTTTTTCTGCC 308 consensus_6437#1 GGTGCCAAATCGGAGGTGTGTTTGAAGACGCTCGCCGTGAAGAACACGGTAGTGCCAGCA 301 * * * ***** * * ** *** *** * * * * * * ** consensus_6437#0 TCGACGAACCACCGTCCTACTCGGAGAGCATGGAGGAGTCGAGGGTTATCTTTGAGGCGC 413 consensus_6437#2 TGGACGAACCGCCCTCCTACTCGGAGAGTATGGAAGAGTCGAGGGTTATCTTTGAGGCGC 368 consensus_6437#1 GTAGGACTCCTCCGACCTGTCAGTAGTG---GTGTGATGCTGCAATCGGCGCCGCCACTC 358 ** ** *** * ** * * ** * * * * * * consensus_6437#0 AGGAGGAAACGATAGCACAGCTAAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGG 473 consensus_6437#2 AGGAGGAAACGATAGCACAGCTCAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGG 428 consensus_6437#1 GGGTCGGG-TGGTAGTGTG--CGGAGCGGTGGCACCGGATCGAGCACCGGATCACGCCGG 415 ** * * *** *** * * ** * * * ** * ** consensus_6437#0 CGCTGCAAACGAAGCTCGCCACCG-AGCTGAACCGCAATG----CGATCTTAACGGA--C 526 consensus_6437#2 CGCTGCAAACGAAGCTCGCCACCG-AGCTGAACCGCAATG----CGATCTTAACTGA--C 481 consensus_6437#1 CTGTACGAAAGCCGCCGGACGTCGGAGCTGAGCAGCAGCGATCTTGGCCCGAGCAAGTCC 475 * * * ** * ** * * ** ****** * *** * * * * * * consensus_6437#0 GTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATG 586 consensus_6437#2 GTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATG 541 consensus_6437#1 GAGATGCACCTGAAGGTGAACAGCGGCGCCGTGCGCATTCCGATCGTCGGCTACGAGGTG 535 * *** * *** * * * *** * ** **** * * ** consensus_6437#0 AAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCATTACCATCG 646 consensus_6437#2 AAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCAT-------- 593 consensus_6437#1 ATGGAGGA-GCGGGCCCGCTTCACGATATTCAAACTGCGCATCGAA-AACAGCATTTCGC 593 * *** * * * *** * * * ***** * ** consensus_6437#0 TCACCCTTCAATCCCTTCAACCTCCGTCCGCCGCGGACATCTATAGTTTTAGCTTGTAAG 706 consensus_6437#2 ------------------------------------------------------------ consensus_6437#1 ACACCTGCTGGCTGGTGCTGCGCCGGTACACCG---ACTTTGTCCGGCTGAACA-ACAAG 649 consensus_6437#0 CGTTTACAGCCTGTAAGACTGCCGCCGCACATTCTGTGGATATGCTCGAAAGTTCGAAAC 766 consensus_6437#2 ------------------------------------------------------------ consensus_6437#1 C--TTGAGGGCAGCTCTACCCGCACTGTG-GTTCTGGTGCTGCCGCGGAAAGGAACAATT 706 consensus_6437#0 TTGTGTTGCAGTAAAACAAAATTGGTAGTTAAAATAATCAAACTATAATCCCCAAAAAGC 826 consensus_6437#2 ------------------------------------------------------------ consensus_6437#1 GGGTTCCGGGNCGGAACCACACTTTTAGCACAGCGGGGTTCATCGAACAACCCGGNATAC 766 consensus_6437#0 AAATACACACAGTACACATTCGTGTCTTTCTTACCGTAACCATCAGCGCTAACGGACCGC 886 consensus_6437#2 ------------------------------------------------------------ consensus_6437#1 ACGGGGGCNTGACAGACACNTTCATCTGAACACGAGAACTTGTTCGAACCAATGGGGATG 826 consensus_6437#0 CGTAGATGATGAGACAGAAGCCGCTGATCATAATCATGGTAAAGATGCCACGTATCACCC 946 consensus_6437#2 ------------------------------------------------------------ consensus_6437#1 CGCCCGTGCCAAGCCGGTCCGGGACTTTTTCTGCCTNGGAACGACCGGGCCTCCTTACTN 886 consensus_6437#0 AGTTCTTCCATCTGAAAGGGGGGAAGGAGGAA 978 consensus_6437#2 -------------------------------- consensus_6437#1 GG------------------------------ 888 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||