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Anopheles gambiae
cluster # 6450 cluster # 6450       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6450#0 length = 1257 sequences # 4  
consensus_6450#1 length = 474 sequences # 1  

consensusID : consensus_6450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1257
fasta sequence
                              [CCGCCCACGCGTCCGCAACGGCAAACTCGGCCGGTACAACATCAAAGAGCGAACAAAGGCCATGGTAGCGTGTTATCCTGGTTCCGGTTCGCATTACGTGAAGCACGTCGACAATCCCAACCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAAAAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGAGCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCAGCCGGCCCACCGCACCCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGAGTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAGGGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGG-ACAGGAGGATCGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCGCGTTCGTACCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGATATAACTATACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTACAGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAGAATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGAGGTGAATATGTTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGGCAAAAGTACAGGAGCACTTAACACAAAGAATCGGTGCAGCGGGGATGTCAGTGATGATCNGATATTGGGTTNCGGCAATGTTGATCGGTTTCATTAGCTAGCAAAATTGTTTAAATGTTTTTTTCCCCGCGGGTACTTTTGACGTGCTTGGCGCAGGGCAACGAAAAGAAGAACAAAAACAAGCAGGAGTAATTGGCGGAATTTGGCTGCTACACTGTAGAAAAGGATTGTTTGTATTGTACTTGTACTAATGCATAAGAAATGGGGTGAAAGGAGCATCATACATCTTGTTTGTACGAATGAACGGGAACGGGAAATAGTGGGAAACAGAAACAAATACACACAAACACACACACACACACTCCCA]

[+] EMBL BM636292             [CCGCCCACGCGTCCGCAACGGCAAACTCGGCCGGTACAACATCAAAGAGCGAACAAAGGCCATGGTAGCGTGTTATCCTGGTTCCGGTTCGCATTACGTGAAGCACGTCGACAATCCCAACCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAAAAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGAGCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCAGCCGGCCCACCGCACCCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGAGTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAGGGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGGCACAGGAGGATCGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCGCGTTCGTACCAAATCGAATAATTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX618821             [                                                                                                                                                                                                                                                                                                                                                                         TCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAGGGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGG ACAGGAGGATCGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCTCGTTCGTACCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGATATAACTATACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTACAGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAGAATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGAGGTGAATATGTTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGGCAAAAGTACAGGAGCACTTA                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX619516             [                                                                                                                                                                                                                                                                                                                                                                                                       GAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAGGGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGG ACAGGAGGATCGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCGCGTTCGTACCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGATATAACTATACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTACAGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAGAATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGAGGTGAATATGGTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGNNAAAAGTACANGAGCACTTAACACAAAGAATCGGTGCAGCGGGGATGTCAGTGATGATCNGATATTGGGTTN                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX615767             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTTCGTACCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGTTATAACTATACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTACAGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAGAATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGAGGTGAATATGTTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGGCAAAAGTACAGGAGCACTTAACACAAAGAATCGGTGCAGC GGGATGTCAGTGATGATCGGATATTGGTTTACGGCAATGTTGATCGGTTTCATTAGCTAGCAAAATTGTTTAAATGTTTTTTTCCCCGCGGGTACTTTTGACGTGCTTGGCGCAGGGCAACGAAAAGAAGAACAAAAACAAGCAGGAGTAATTGGCGGAATTTGGCTGCTACACTGTAGAAAAGGATTGTTTGTATTGTACTTGTACTAATGCATAAGAAATGGGGTGAAAGGAGCATCATACATCTTGTTTGTACGAATGAACGGGAACGGGAAATAGTGGGAAACAGAAACAAATACACACAAACACACACACACACACTCCCA]


>consensus_6450#0 CCGCCCACGCGTCCGCAACGGCAAACTCGGCCGGTACAACATCAAAGAGCGAACAAAGGC CATGGTAGCGTGTTATCCTGGTTCCGGTTCGCATTACGTGAAGCACGTCGACAATCCCAA CCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAA AAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGA GCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCA GCCGGCCCACCGCACCCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGA GTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTC GGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAG GGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGGACAGGAGGAT CGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCGCGTTCGTA CCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGATATAACTA TACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTAC AGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAG AATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGA GGTGAATATGTTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGGCAAAAGTACA GGAGCACTTAACACAAAGAATCGGTGCAGCGGGGATGTCAGTGATGATCNGATATTGGGT TNCGGCAATGTTGATCGGTTTCATTAGCTAGCAAAATTGTTTAAATGTTTTTTTCCCCGC GGGTACTTTTGACGTGCTTGGCGCAGGGCAACGAAAAGAAGAACAAAAACAAGCAGGAGT AATTGGCGGAATTTGGCTGCTACACTGTAGAAAAGGATTGTTTGTATTGTACTTGTACTA ATGCATAAGAAATGGGGTGAAAGGAGCATCATACATCTTGTTTGTACGAATGAACGGGAA CGGGAAATAGTGGGAAACAGAAACAAATACACACAAACACACACACACACACTCCCA



consensusID : consensus_6450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence
                              [AATCGCCGAGGTTTCTTTGACTATAGGCCATGGTAGCGTGTTATCCTGGTTCCGGTTCGCACTACGTGAAGCACGTCGACAATCCCAACCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAAAAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGAGCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCAGCCGGCCCACCGCACTCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGAGTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACACGCGCAAACGGTGGTGGAAGGGGGAAAGAGCGACCAGCCAGACCAGAC]

[+] EMBL AL931680             [AATCGCCGAGGTTTCTTTGACTATAGGCCATGGTAGCGTGTTATCCTGGTTCCGGTTCGCACTACGTGAAGCACGTCGACAATCCCAACCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAAAAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGAGCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCAGCCGGCCCACCGCACTCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGAGTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACACGCGCAAACGGTGGTGGAAGGGGGAAAGAGCGACCAGCCAGACCAGAC]


>consensus_6450#1 AATCGCCGAGGTTTCTTTGACTATAGGCCATGGTAGCGTGTTATCCTGGTTCCGGTTCGC ACTACGTGAAGCACGTCGACAATCCCAACCGTGACGGGCGCTGCATTACCGCCATCTACT ATCTCAATCTCGACTGGGACGTGCGGAAAAGTGGCGGTCTGTTAAGGATTTTCCCCGAGG GATGCAACGATCGGGTGGCTGACATCGAGCCCATCTTTGATCGCATTCTGTTCTTCTGGT CCGACCGGCGGAACCCGCACGAGGTGCAGCCGGCCCACCGCACTCGGTACGCCATCACGC TCTGGTATCTCGATGCGGAGGAGCGCGAGTCGGCCCGGTTGCGCTACCAGCGGGACTGCG AGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAG AGCACACGCGCAAACGGTGGTGGAAGGGGGAAAGAGCGACCAGCCAGACCAGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6450#0      CCGCCCACGCGTCCGCAACGGCAAACTCGGCCGGTACAACATCAAAGAGCGAACAAAGGC 60
consensus_6450#1      ----------------------------AATCGCCGAGGTTTCT----TTGACTATAGGC 28
                                                     **        **       **  * ****

consensus_6450#0      CATGGTAGCGTGTTATCCTGGTTCCGGTTCGCATTACGTGAAGCACGTCGACAATCCCAA 120
consensus_6450#1      CATGGTAGCGTGTTATCCTGGTTCCGGTTCGCACTACGTGAAGCACGTCGACAATCCCAA 88
                      ********************************* **************************

consensus_6450#0      CCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAA 180
consensus_6450#1      CCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAA 148
                      ************************************************************

consensus_6450#0      AAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGA 240
consensus_6450#1      AAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGA 208
                      ************************************************************

consensus_6450#0      GCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCA 300
consensus_6450#1      GCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCA 268
                      ************************************************************

consensus_6450#0      GCCGGCCCACCGCACCCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGA 360
consensus_6450#1      GCCGGCCCACCGCACTCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGA 328
                      *************** ********************************************

consensus_6450#0      GTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTC 420
consensus_6450#1      GTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTC 388
                      ************************************************************

consensus_6450#0      GGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAG 480
consensus_6450#1      GGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACACGCGCAAACGGTGGTGGAAGGG 448
                      ************************************** *************** *** *

consensus_6450#0      GGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGGACAGGAGGAT 540
consensus_6450#1      GGAAAGAGCGACCAGCCAGACCAGAC---------------------------------- 474
                      *************** **********                                  

consensus_6450#0      CGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCGCGTTCGTA 600
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      CCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGATATAACTA 660
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      TACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTAC 720
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      AGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAG 780
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      AATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGA 840
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      GGTGAATATGTTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGGCAAAAGTACA 900
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      GGAGCACTTAACACAAAGAATCGGTGCAGCGGGGATGTCAGTGATGATCNGATATTGGGT 960
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      TNCGGCAATGTTGATCGGTTTCATTAGCTAGCAAAATTGTTTAAATGTTTTTTTCCCCGC 1020
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      GGGTACTTTTGACGTGCTTGGCGCAGGGCAACGAAAAGAAGAACAAAAACAAGCAGGAGT 1080
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      AATTGGCGGAATTTGGCTGCTACACTGTAGAAAAGGATTGTTTGTATTGTACTTGTACTA 1140
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      ATGCATAAGAAATGGGGTGAAAGGAGCATCATACATCTTGTTTGTACGAATGAACGGGAA 1200
consensus_6450#1      ------------------------------------------------------------
                                                                                  

consensus_6450#0      CGGGAAATAGTGGGAAACAGAAACAAATACACACAAACACACACACACACACTCCCA 1257
consensus_6450#1      ---------------------------------------------------------
                                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)