These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1257 fasta sequence [CCGCCCACGCGTCCGCAACGGCAAACTCGGCCGGTACAACATCAAAGAGCGAACAAAGGCCATGGTAGCGTGTTATCCTGGTTCCGGTTCGCATTACGTGAAGCACGTCGACAATCCCAACCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAAAAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGAGCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCAGCCGGCCCACCGCACCCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGAGTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAGGGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGG-ACAGGAGGATCGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCGCGTTCGTACCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGATATAACTATACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTACAGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAGAATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGAGGTGAATATGTTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGGCAAAAGTACAGGAGCACTTAACACAAAGAATCGGTGCAGCGGGGATGTCAGTGATGATCNGATATTGGGTTNCGGCAATGTTGATCGGTTTCATTAGCTAGCAAAATTGTTTAAATGTTTTTTTCCCCGCGGGTACTTTTGACGTGCTTGGCGCAGGGCAACGAAAAGAAGAACAAAAACAAGCAGGAGTAATTGGCGGAATTTGGCTGCTACACTGTAGAAAAGGATTGTTTGTATTGTACTTGTACTAATGCATAAGAAATGGGGTGAAAGGAGCATCATACATCTTGTTTGTACGAATGAACGGGAACGGGAAATAGTGGGAAACAGAAACAAATACACACAAACACACACACACACACTCCCA] [+] EMBL BM636292 [CCGCCCACGCGTCCGCAACGGCAAACTCGGCCGGTACAACATCAAAGAGCGAACAAAGGCCATGGTAGCGTGTTATCCTGGTTCCGGTTCGCATTACGTGAAGCACGTCGACAATCCCAACCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAAAAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGAGCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCAGCCGGCCCACCGCACCCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGAGTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAGGGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGGCACAGGAGGATCGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCGCGTTCGTACCAAATCGAATAATTTAT ] [+] EMBL BX618821 [ TCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAGGGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGG ACAGGAGGATCGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCTCGTTCGTACCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGATATAACTATACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTACAGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAGAATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGAGGTGAATATGTTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGGCAAAAGTACAGGAGCACTTA ] [+] EMBL BX619516 [ GAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAGGGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGG ACAGGAGGATCGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCGCGTTCGTACCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGATATAACTATACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTACAGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAGAATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGAGGTGAATATGGTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGNNAAAAGTACANGAGCACTTAACACAAAGAATCGGTGCAGCGGGGATGTCAGTGATGATCNGATATTGGGTTN ] [+] EMBL BX615767 [ GTTCGTACCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGTTATAACTATACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTACAGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAGAATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGAGGTGAATATGTTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGGCAAAAGTACAGGAGCACTTAACACAAAGAATCGGTGCAGC GGGATGTCAGTGATGATCGGATATTGGTTTACGGCAATGTTGATCGGTTTCATTAGCTAGCAAAATTGTTTAAATGTTTTTTTCCCCGCGGGTACTTTTGACGTGCTTGGCGCAGGGCAACGAAAAGAAGAACAAAAACAAGCAGGAGTAATTGGCGGAATTTGGCTGCTACACTGTAGAAAAGGATTGTTTGTATTGTACTTGTACTAATGCATAAGAAATGGGGTGAAAGGAGCATCATACATCTTGTTTGTACGAATGAACGGGAACGGGAAATAGTGGGAAACAGAAACAAATACACACAAACACACACACACACACTCCCA] consensusID : consensus_6450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [AATCGCCGAGGTTTCTTTGACTATAGGCCATGGTAGCGTGTTATCCTGGTTCCGGTTCGCACTACGTGAAGCACGTCGACAATCCCAACCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAAAAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGAGCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCAGCCGGCCCACCGCACTCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGAGTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACACGCGCAAACGGTGGTGGAAGGGGGAAAGAGCGACCAGCCAGACCAGAC] [+] EMBL AL931680 [AATCGCCGAGGTTTCTTTGACTATAGGCCATGGTAGCGTGTTATCCTGGTTCCGGTTCGCACTACGTGAAGCACGTCGACAATCCCAACCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAAAAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGAGCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCAGCCGGCCCACCGCACTCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGAGTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTCGGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACACGCGCAAACGGTGGTGGAAGGGGGAAAGAGCGACCAGCCAGACCAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6450#0 CCGCCCACGCGTCCGCAACGGCAAACTCGGCCGGTACAACATCAAAGAGCGAACAAAGGC 60 consensus_6450#1 ----------------------------AATCGCCGAGGTTTCT----TTGACTATAGGC 28 ** ** ** * **** consensus_6450#0 CATGGTAGCGTGTTATCCTGGTTCCGGTTCGCATTACGTGAAGCACGTCGACAATCCCAA 120 consensus_6450#1 CATGGTAGCGTGTTATCCTGGTTCCGGTTCGCACTACGTGAAGCACGTCGACAATCCCAA 88 ********************************* ************************** consensus_6450#0 CCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAA 180 consensus_6450#1 CCGTGACGGGCGCTGCATTACCGCCATCTACTATCTCAATCTCGACTGGGACGTGCGGAA 148 ************************************************************ consensus_6450#0 AAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGA 240 consensus_6450#1 AAGTGGCGGTCTGTTAAGGATTTTCCCCGAGGGATGCAACGATCGGGTGGCTGACATCGA 208 ************************************************************ consensus_6450#0 GCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCA 300 consensus_6450#1 GCCCATCTTTGATCGCATTCTGTTCTTCTGGTCCGACCGGCGGAACCCGCACGAGGTGCA 268 ************************************************************ consensus_6450#0 GCCGGCCCACCGCACCCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGA 360 consensus_6450#1 GCCGGCCCACCGCACTCGGTACGCCATCACGCTCTGGTATCTCGATGCGGAGGAGCGCGA 328 *************** ******************************************** consensus_6450#0 GTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTC 420 consensus_6450#1 GTCGGCCCGGTTGCGCTACCAGCGGGACTGCGAGAATCGCTTTAACAGCAAGGCCTAGTC 388 ************************************************************ consensus_6450#0 GGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACATGCGCAAACGGTGGTGCAAGAG 480 consensus_6450#1 GGGGTCGGGTCTCGGGTCGAAAGAGGAGCGAGAGCACACGCGCAAACGGTGGTGGAAGGG 448 ************************************** *************** *** * consensus_6450#0 GGAAAGAGCGACCAGTCAGACCAGACAGACAGACAGACAGACAGACAGGGACAGGAGGAT 540 consensus_6450#1 GGAAAGAGCGACCAGCCAGACCAGAC---------------------------------- 474 *************** ********** consensus_6450#0 CGGTGGTTCGTGGTTTACTGGATCTGTTCCCGGTGATGCGCGGTTGCTCTCGCGTTCGTA 600 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 CCAAATCGAATAATTTATTAGCAAAAAGCAAAACCTTGTTATCCAAATGTGATATAACTA 660 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 TACGTGTGGGTGTGTATGTGTGTGTGTGTGCATGAGGTTTAGTGGACAGGACTTACGTAC 720 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 AGTGTTTTACGTACTTGCACACATTGTGCGTTAAAATACAATGAGAGCAGTATGCATTAG 780 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 AATGGTAGAGAAAGTAAGTAAGATAAAGCAACGACCGCGCAGCCTAGGCCAAGGAGAGGA 840 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 GGTGAATATGTTTTGCAATCGTATTTGCAGTGTAAATAGCAGCAGATGGGCAAAAGTACA 900 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 GGAGCACTTAACACAAAGAATCGGTGCAGCGGGGATGTCAGTGATGATCNGATATTGGGT 960 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 TNCGGCAATGTTGATCGGTTTCATTAGCTAGCAAAATTGTTTAAATGTTTTTTTCCCCGC 1020 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 GGGTACTTTTGACGTGCTTGGCGCAGGGCAACGAAAAGAAGAACAAAAACAAGCAGGAGT 1080 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 AATTGGCGGAATTTGGCTGCTACACTGTAGAAAAGGATTGTTTGTATTGTACTTGTACTA 1140 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 ATGCATAAGAAATGGGGTGAAAGGAGCATCATACATCTTGTTTGTACGAATGAACGGGAA 1200 consensus_6450#1 ------------------------------------------------------------ consensus_6450#0 CGGGAAATAGTGGGAAACAGAAACAAATACACACAAACACACACACACACACTCCCA 1257 consensus_6450#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||