These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 781 fasta sequence [CCGCGTTTATGATCTGTAATAAACAGTGGGTTTAGCATCAAACCTTAGCGATGGAGCAAATTGAACAACCAACGAGCGTCTCGGCTGGTACGGTGGAGATAATGCTCAAAAATGCTTCCACACCGGAACAGGTGGCGAAAAATGAAGGTTTAAACTGTAAAGCAGACACAGCGGAGTACTGTGACAATGTGAAAGAAACGAACGTGCGACAAAAGCGTAAGAAAGCGTCAGAAAAGATTGATGCGAGCGGTGTTACCGATGTCAAGCCTACGTTGGATCATCGATCGGCGGGCAAGGAACCGATCGTATCTTCCCATCCCGCCCCATCCTCGGAAGCGATGGGAAATCTTTCCAAAGCAAACGGAAAACGGCTAAAGCTGGATCTGAAAACCCATCCGGAACAACACCACAAGCCGGAACCAACGTCACCGCTAGGGCTGTTGCATGAGGAAAAAGTGATCGTCCGAAGCAAACCACCGATTCCACCGAAACCGGATATAAGGACGATCCCGGCACCGCCCCAAGGGCAACAGCGAGTGTCCATTTCGCCGACCGGCACACCTCAAGCAAAGGGCTGCAAGAAGCAGCAGGTGACAGAAGCGCACAATGCCCATACCGTCCAGAAGCTGCTGGCACAGAACGAACAGATGAGGCTGGAACTGAGCGAACTCCGAACGAGCTTAGCTGCGGAGCGGAATGCTGTCAGAGTGTTAAGGGCCCAAAACGAGTCCGATCTGCGAAAGACAAAATCCGAATGCAAGAAACTGCAGGAAGCTCTGCA] [+] EMBL BM657382 [CCGCGTTTATGATCTGTAATAAACAGTGGGTTTAGCATCAAACCTTAGCGATGGAGCAAATTGAACAACCAACGAGCGTCTCGGCTGGTACGGTGGAGATAATGCTCAAAAATGCTTCCACACCGGAACAGGTGGCGAAAAATGAAGGTTTAAACTGTAAAGCAGACACAGCGGAGTACTGTGACAATGTGAAAGAAACGAACGTGCGACAAAAGCGTAAGAAAGCGTCAGAAAAGATTGATGCGAGCGGTGTTACCGATGTCAAGCCTACGTTGGATCATCGATCGGCGGGCAAGGAACCGATCGTATCTTCCCATCCCGCCCCATCCTCGGAAGCGATGGGAAATCTTTCCAAAGCAAACGGAAAACGGCTAAAGCTGGATCTGAAAACCCATCCGGAACAACACCACAAGCCGGAACCAACGTCACCGCTAGGGCTGTTGCATGAGGAAAAAGTGATCGTCCGAAGCAAACCACCGATTCCACCGAAACCGGATATAAGGACGATCCCGGCACCGCCCCAAGGGCAACAGCGAGTGTCCATTTCGCCGACCGGCACACCTCAAGCAAAGGGCTGCAAGAAGCAGCAGGTGACAGAAGCGCACAATGCCCATACCG ] [+] EMBL BM639380 [ cCGAAAAATGAAGGTTTAAACTGTAAAGCAGACACAGCGGAGTACTGTGACAATGTGAAAGAAACGAACGTGCGACAAAAGCGTAAGAAAGCGTCAGAAAAGATTGATGCGAGCGGTGTTACCGATGTCAAGCCTACGTTGGATCATCGATCGGCGGGCAAGGAACCGATCGTATCTTCCCATCCCGCCCCATCCTCGGAAGCGATGGGAAATCTTTCCAAAGCAAACGGAAAACGGCTAAAGCTGGATCTGAAAACCCATCCGGAACAACACCACAAGCCGGAACCAACGTCACCGCTAGGGCTGTTGCATGAGGAAAAAGTGATCGTCCGAAGCAAACCACCGATTCCACCGAAACCGGATATAAGGACGATCCCGGCACCGCCCCAAGGGCAACAGCGAGTGTCCATTTCGCCGACCGGCACACCTCAAGCAAAGGGCTGCAAGAAGCAGCAGGTGACAGAAGCGCACAATGCCCATACCGTCCAGAAGCTGCTGGCACAGAACGAACAGATGAGGCTGGAACTGAGCGAACTCCGAACGAGCTTAGCTGCGGAGCGGAATGCTGTCAGAGTGTTAAGGGCCCAAAACGAGTCCGATCTGCGAAAGACAAAATCCGAATGCAAGAAACTGCAGGAAGCTCTGCA] consensusID : consensus_6458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 722 fasta sequence [AGCACGCAATCGACCAAAGGTGGGCAAACCCAAA-ATAAAAAAAAAAAAAACCCA-ACCCAACGGTGCAAAGAACCTAAAGCGTAAAATCGCAACCGTGCGTGCGTGCGTGCGTGCGTGCGTGAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAATCCGTACCACCCGGGCCCTGCGATTGCGAGCAAACGTGCGAACGCATTGGATCTGTTCTGGTGACCGATTGTGAAGTGTAAATAGGTTACTTCCAACCACACCCAGCACAGCCGGTGGACGGAGGT-AAAAAATTGGATCGATTTGTCCACGACACAACGCCCCAAAAGTCCAACACCCTCGGTACGACACACTGAGCTCTATAGAAAAAAAAAAACAACAATAAGGGCAAGTCATCATCCATCCTGTTGGAACGGTGCGAAATTAAAGGTACAAAGCCCACCGGTGCATATGAATCGTGTGCCGAACATTGAATTTATCCGCCACTAGAGAGTGAGAGAGACAAGAAACAAGAGTGAAGCCCAGTGCGAGGAAGTTAGTGTTAAAATTAAAATTTAAATGTACTGCCTACGTGAAGAGTCTCAGCATACGTATCAGCAGCAAAAGCAGCAGCAACACCAGGACGTTTATGATCTGTAATAAGCAGTGGGTTTAGCATAAAACCTTAGCGATGGAGAACATAGAACAAACAACAAGCGTCTCGGCTGGTACGGTGGAGACA] [-] EMBL BM643404 [AGCACGCAATCGACCAAAGGTGGGCAAACCCAAA ATAAAAAAAAAAAAAACCCA ACCCAACGGTGCAAAGAACCTAAAGCGTAAAATCGCAAC CGTGCGTGCGTGCGTGCGTGAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAATCCGTACCACCCGGGCCCTGCGATTGCGAGCAAACGTGCGAACGCATTGGATCTGTTCTGGTGACCGATTGTGAAGTGTAAATAGGTTACTTCCAACCACACCCAGCACAACCGGTGGACGGAGGTAAAAAAATTGGATCGATTTGTCCACGACACAACGCCCCAAAAGTCCAACACCCTCGGCACGACACACTGAG ] [+] EMBL BM633561 [ ccgCAAACACAAAATAAAAAAAACCCCACACCCAACGGTGCAAAGAACCTAAAGCGTAAAATCGCAACCGTGCGTGCGTGCGTGCGTGCGTGCGTGAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAATCCGTACCACCCGGGCCCTGCGATTGCGAGCAAACGTGCGAACGCATTGGATCTGTTCTGGTGACCGATTGTGAAGTGTAAATAGGTTACTTCCAACCACACCCAGCACAGCCGGTGGACGGAGGT AAAAAATTGGATCGATTTGTCCACGACACAACGCCCCAAAAGTCCAACACCCTCGGTACGACACACTGAGCTCTATAG ] [+] EMBL BM646246 [ ccgCAACGGTGCAAAGAACCTAAAGCGTAAAATCGCAACCGTGCGTGCGTGCGTGCGTGCGTGCGTGAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAATCCGTACCACCCGGGCCCTGCGATTGCGAGCAAACGTGCGAACGCATTGGATCTGTTCTGGTGACCGATTGTGAAGTGTAAATAGGTTACTTCCAACCACACCCAGCACAGCCGGTGGACGGAGGT AAAAAATTGGATCGATTTGTCCACGACACAACGCCCCAAAAGTCCAACACCCTCGGTACGACACACTGAGCTCTATAGAAAAAAAAAAACAACAATAAGGGCAAGTCATCATCCATCCTGTTGGAACGGTGCGAAATTAAAGGTACAAAGCCCACCGGTGCATATGAATCGTGTGCCGAACATTGAATTTATCCGCCACTAGAGAGTGAGAGAGACAAGAAACAAGAGTGAAGCCCAGTGCGAGGAAGTTAGTGTTAAAATTAAAATTTAAATGTACTGCCTACGTGAAGAGTCTCAGCATACGTATCAGCAGCAAAAGCAGCAGCAACACCAGGACGTTTATGATCTGTAATAAGCAGTGGGTTTAGCATAAAACCTTAGCGATGGAGAACATAGAACAAACAACAAGCGTCTCGGCTGGTACGGTGGAGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6458#0 CCGCGTTTATGATCTGTAATAAACAGTGGGTTTAGCATCAAACCTTAGCGATGGAGCAAA 60 consensus_6458#1 ----------AGCACGCAATCGACCAAAGGTG----GGCAAACCCAAA--ATAAAAAAAA 44 * *** ** *** ****** * ** * *** consensus_6458#0 TTGAACAACCAACGAGCGTCTCGGCTGGTACGGTGGAGATAATGCTCAAAAATGCTTCCA 120 consensus_6458#1 AAAAAACCCAACCCAACGGTGCAAAGAACCTAAAGCGTAAAAT-CGCAACCGTGCGTGCG 103 ** * * * * ** * * * *** * *** *** * * consensus_6458#0 CACCGGAACAGGTG-GCGAAAAATGAAGGTTTAAACTGTA-AAGCAGACACAGCGGAGTA 178 consensus_6458#1 TGCGTGCGTGCGTGCGTGAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAAT 163 * * *** * *** * ** *** * * * * * * ** consensus_6458#0 CTGTGACAATGTGAAAGAAACGAACGTGCGACAAAAGCGTAAGAAAGCGTCAGAAAAGAT 238 consensus_6458#1 CCGT-ACCACCCGGGCCCTGCGATTGCGAGC---AAACGTGCGAACGCATTGGATCTG-T 218 * ** ** * * *** * * * ** *** *** ** * ** * * consensus_6458#0 TGATGCGAGCGGT-GTTACCGATGTCAAGCCTACGTTGGATCATCGATCGGCG-GGCAAG 296 consensus_6458#1 TCTGGTGACCGATTGTGAAGTGTAAATAGGTTACTTCCAACCA-CACCCAGCACAGCCGG 277 * * ** ** * ** * * ** *** * * ** * * ** ** * consensus_6458#0 GAACCGATCGTATCTTCCCATCCCGCCCCATCCTCGGAAGCGATGGGAAATCTTTCCAAA 356 consensus_6458#1 TGGACGGAGGTAAAAAATTGGATCGATTTGTCCACG-ACACAACGCCCCAAAAGTCCAAC 336 ** *** ** *** ** * * * * * ***** consensus_6458#0 GCAAACGGAAAACGGCTAAAGCTGGATCTGAAAACCCATCCGGAACAACACCACAAGCCG 416 consensus_6458#1 ACCCTCGGTA--CGAC--ACACTGAGCTCTATAGAAAAAAAAAAACAACAATAAGGGC-- 390 * *** * ** * * *** * * * ******* * ** consensus_6458#0 GAACCAACGTCACCGCTAGGGCTGTTGCA-TGAGGAAAAAGTGATCGTCCGAAGCAAACC 475 consensus_6458#1 ------AAGTCATCATCCATCCTGTTGGAACGGTGCGAAATTAAAGGTACAAAGC---CC 441 * **** * ****** * * * *** * * ** * **** ** consensus_6458#0 ACCGATTCCACCGAAAC-CGGATATAAGGACGATCCCGGCACCGCCCCAAGGGCAACAGC 534 consensus_6458#1 ACCGGTGCATATGAATCGTGTGCCGAACATTGAATTTATCCGCCACTAGAGAGTGAGAGA 501 **** * * *** * * ** ** * * * ** * * ** consensus_6458#0 GAGTGTCCATTTCGCCGACCGGCACACCTCAAGCAAAGGGCTGCAAGAAGCAGCAGGTGA 594 consensus_6458#1 GACAAGAAACAAGAGTGA--AGCCCAGTGCGAGGAAGTTAGTGTTAAAATTAAAATTT-- 557 ** * ** ** ** * ** ** ** * ** * * * consensus_6458#0 CAGAAGCGCACAATGCCCATACCGTCCAGAAGCT--GCTGGCACAGAACGAACAGATGAG 652 consensus_6458#1 ---AAATGTAC--TGCCTA---CGTGAAGAGTCTCAGCATACGTATCAGCAGCAAAAGCA 609 ** * ** **** * *** *** ** ** * * * * ** * * consensus_6458#0 GCTGGAACTGAGCGAACTCCGAACGAGCTTAGCTGCGGAGCGGAATGCTGTCAGAGTGTT 712 consensus_6458#1 GCAGCAAC--ACCAGGACGTTTATGATCTGTAATAAGCAGTGGGTTTAGCATAAAACCTT 667 ** * *** * * * ** ** * * ** ** * * * ** consensus_6458#0 AAGGGCCCAAAACG-AGTCCGATCTGCGAAAGACAAAATCCGAATGCAAGAAACTGCAGG 771 consensus_6458#1 AGCGATGGAGAACATAGAACAAACAACAAGCGTCTCGGCTGGTACGGTGGAGACA----- 722 * * * *** ** * * * * * * * * * * ** ** consensus_6458#0 AAGCTCTGCA 781 consensus_6458#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||