These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 898 fasta sequence [AACGAACGAGCGCAGCATCAATCAGCAATAGCAGAAGCAGAATCGGTCGAGAATGGCACAGCGAAAAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTCGTGTGGAAGAAATCCCCATGCCACGGCCGCGCGATCATGAGGTCCTGCTCGAGATGGACTGTGTGGGCATCTGCGGCTCGGACGTGCACTACGTGTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGATGGTGCTCGGTCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAAGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTACTGTGTGACCACGGGGCATGGTAATTTGTGCAACTACTACACTCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGGGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGGCAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCGAAGGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGCCAAGACGCTCGGGGCTGATGCAACGCTGGCGGTTAGCGGACACGATACGCAGGATGAGATCGTGAAGCGCATTCATGCGCTGCTCGGTACTGCGCCAGACATTAGCATCGAGTGTACGGGGGCGGAAGCGTGCGTACAGCTGGGAATTGAAGCTACCGTACCAGGCGGTGTGGTGACGCTGGTTGGCATCGGTGCCATACAGCAGCGTGTCCCG] [+] EMBL BX624790 [AACGAACGAGCGCAGCATCAATCAGCAATAGCAGAAGCAGAATCGGTCGAGAATGGCACAGCGAAAAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTCGTGTGGAAGAAATCCCCATGCCACGGCCGCGCGATCATGAGGTCCTGCTCGAGATGGACTGTGTGGGCATCTGCGGCTCGGACGTGCACTACGTGTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGATGGTGCTCGGTCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAAGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTACTGTGTGACCACGGGGCATGGTAATTTGTGCAACTACTACACTCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGGGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGGCAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCGAANGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGNCAAGACGCTCGGGGCTGATGCAACGCTGGCGGNTAGCGGACACGATACGCAGGATGAGATCGTGAAGCGCATTCATGCGCTGCT ] [+] EMBL BX623500 [ ATCGGTCGAGAATGGCACAGCGAAAAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTCGTGTGGAAGAAATCCCCATGCCACGGCCGCGCGATCATGAGGTCCTGCTCGAGATGGACTGTGTGGGCATCTGCGGCTCGGACGTGCACTACGTGTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGATGGTGCTCGGTCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAAGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTACTGTGTGACCACGGGGCATGGTAATTTGTGCAACTACTACACTCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGGGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGGCAGTACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCGAAGGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGCCAAGACGCTCNGGGCTGATGCAACGCTGGCGGTTAGCGGACACGATACGCANGATGAGATCGTGAAGCGCATTCATGCGCTGCTTGGTACTGCGCCAGACAT ] [+] EMBL BX614951 [ ACTACGTGTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGCTGGTACTTGGCCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAGGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTATTGTGCGACTACGGGGCATGGTAATTTGTGCAACTACTACTCGCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGCGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGGCAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCCAAGGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGCCAAGACGCTAGGGGCCGATGCAACGCTGGCGGTTAGCGGACACGATACGCAGGATGAGATCGTGAAGCGCATTCATGCACTGCTCGGTACTGCGCCAGACATTAGCATCGAGTGTACGGGGGCGGAAGCGTGCGTACAGCTGGGAATTGAAGCTACCGTACCAGGCGGTGTGGTGACGCTGGTTGGCATCGGTGCCATACAGCAGCGTGTCCCG] [+] EMBL BX610019 [ GTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGCTGGTACTTGGCCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAGGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTATTGTGCGACTACGGGGCATGGTAATTTGTGCAACTACTACTCGCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGCGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGGCAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCCAAGGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGCCAAGACGCTAGGGGCCGATGCAACGCTGGCGGTTAGCGGACACGATACGCAGGATGAGATCGTGAAGCGCATTCATGCACTGCTCGGTACTGCGCCAGACATTA ] consensusID : consensus_6465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [GGGCAAGATTGGCCCGAGGTTNCNATCGAACGAACGAGCGCAGCATCAAATCAGCAATAGCAGAAGCAGAATCGGTCGAGAATGGCACAGCGAANAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTTCGTGTGGCAAGGAAAATTCCCATGCCACGGGCCGCGCGATCATGAAGGGTCCTNGCTTCGAAGGATTGGGGACCTTGGTTGGTTGGGGGCATTTCTTGGCCGGGGCTTCGGGGAACCGGTTGGCAACTTAAACGGTGGTTCGNGCAACGGGCAGGGANATTCCG] [+] EMBL AL696877 [GGGCAAGATTGGCCCGAGGTTNCNATCGAACGAACGAGCGCAGCATCAAATCAGCAATAGCAGAAGCAGAATCGGTCGAGAATGGCACAGCGAANAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTTCGTGTGGCAAGGAAAATTCCCATGCCACGGGCCGCGCGATCATGAAGGGTCCTNGCTTCGAAGGATTGGGGACCTTGGTTGGTTGGGGGCATTTCTTGGCCGGGGCTTCGGGGAACCGGTTGGCAACTTAAACGGTGGTTCGNGCAACGGGCAGGGANATTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6465#0 ----------------------------AACGAACGAGCGCAGCATCAA-TCAGCAATAG 31 consensus_6465#1 GGGCAAGATTGGCCCGAGGTTNCNATCGAACGAACGAGCGCAGCATCAAATCAGCAATAG 60 ********************* ********** consensus_6465#0 CAGAAGCAGAATCGGTCGAGAATGGCACAGCGAAAAGTTAAAAATCTTGCCGGCGTGGTA 91 consensus_6465#1 CAGAAGCAGAATCGGTCGAGAATGGCACAGCGAANAGTTAAAAATCTTGCCGGCGTGGTA 120 ********************************** ************************* consensus_6465#0 CACGGCGTCGAAGACTTT-CGTGTGGAAG---AAATCCCCATGCCACGG-CCGCGCGATC 146 consensus_6465#1 CACGGCGTCGAAGACTTTTCGTGTGGCAAGGAAAATTCCCATGCCACGGGCCGCGCGATC 180 ****************** ******* * **** ************ ********** consensus_6465#0 ATGA--GGTCCTGCTCGAGATGGACTGTGTGGGCATCTGCGGCTCGGACGTGCACTACGT 204 consensus_6465#1 ATGAAGGGTCCTNGCTTCGAAGGATTGGG--GACCTTGGTTGGTTGG--GGGCATTTCTT 236 **** ****** ** *** ** * * * * * * * ** * *** * * * consensus_6465#0 GTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGATGGTGCTCGGTCACGAATC 264 consensus_6465#1 G----GCCGGGGCTTCGGGGA--ACCGGTTGGCAACTTAAACGGTGGT---TCGNGCAAC 287 * * * ** ***** ** ** * * * * **** * ** * * * consensus_6465#0 GTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGT 324 consensus_6465#1 GGGCAGGGANATTCCG-------------------------------------------- 303 * * * * * * consensus_6465#0 CGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAAGGCCGGCCGGTACAA 384 consensus_6465#1 ------------------------------------------------------------ consensus_6465#0 TATCTGCCCGCAGGGTGTTTACTGTGTGACCACGGGGCATGGTAATTTGTGCAACTACTA 444 consensus_6465#1 ------------------------------------------------------------ consensus_6465#0 CACTCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGC 504 consensus_6465#1 ------------------------------------------------------------ consensus_6465#0 CCTGCTGGAACCGCTTGCCGTGGGGGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGG 564 consensus_6465#1 ------------------------------------------------------------ consensus_6465#0 CAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAA 624 consensus_6465#1 ------------------------------------------------------------ consensus_6465#0 AGCGATGGGTGCGGCGAAGGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGC 684 consensus_6465#1 ------------------------------------------------------------ consensus_6465#0 CAAGACGCTCGGGGCTGATGCAACGCTGGCGGTTAGCGGACACGATACGCAGGATGAGAT 744 consensus_6465#1 ------------------------------------------------------------ consensus_6465#0 CGTGAAGCGCATTCATGCGCTGCTCGGTACTGCGCCAGACATTAGCATCGAGTGTACGGG 804 consensus_6465#1 ------------------------------------------------------------ consensus_6465#0 GGCGGAAGCGTGCGTACAGCTGGGAATTGAAGCTACCGTACCAGGCGGTGTGGTGACGCT 864 consensus_6465#1 ------------------------------------------------------------ consensus_6465#0 GGTTGGCATCGGTGCCATACAGCAGCGTGTCCCG 898 consensus_6465#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||