These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 665 fasta sequence [CCGCGGACGCGTGGGCGGACGCGCGGTTTCCCTTCAGCAAAATGTGTGTTTTACGGCAAGTCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACTCCCAAACTCCAGCGCCCAACAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATCCCGAACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGAAGCTGGCCCATACATTGCAGTACAGCAG-CACAGTGCAGTGCATTCCGCTACTAACA-TCGGATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTCAGCAGGCTTACCCTTATTTGATGCGGGAGTTTATGCTGTGTGCTGGGGTTTAAGGAAAGTAAGGT] [+] EMBL BM581238 [CCGCGGACGCGTGGGCGGACGCGTGGGTTCCCTTCAGCAAAATGTGTGTTTTACGGCAAGTCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACTCCCAAACTCCAGCGCCCAACAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATCCCGAACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGAAGCTGGCCCATACATTGCAGTACAGCAG CACAGTGCAGTGCATTCCGCTACTAACA TCGGATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTCAGCAGGCTTACCCTTATTTGATGCGGGAGTTT ] [+] EMBL BM629571 [ cCGCTTTCCCTTCAGCAAAATGTGTGTTTTACGGCAAGTCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACTCCCAAACTCCAGCGCCCAACAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATCCCGAACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGAAGCTGGCCCATACATTGCAGTACAGCAG CACAGTGCAGTGCATTCCGCTACTAACA TCGGATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTCAGCAGGCTTACCCTTATTTGA ] [+] EMBL BM612496 [ ccGTTTCCTTTCAGCAAAATGTGTGTTTTACGGCAAGTCGGCCTGCTGGTCGTGGTATTGGCAACAATTTCACTGCCAATCTCCAGCGCCCAGCAGCAGAAGGAGGAACAGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCATACCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCCTTCCGAACTTCTACGAAGTTGCAGTCGGTAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGAAGCTGGCCCATACATTGCAGTACAGCAGCCACAGTGCAGTGCATTCCGCTACTAACATTCGGATAGCAGTCTTATCCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTCAGCAGGCTTACCCTTATTTGATGCGGGAGTTTATGCTGTGTGCTGGGGTTTAAGGAAAGTAAGGT] [+] EMBL BM628147 [ ccGCAAAATGTGTGTTTTACGGCAAGTCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACTCCCAAACTCCAGCGCCCAACAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATCCCGAACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGAAGCTGGCCCATACATTGCAGTACAGCAG CACAGTGCAGTGCATTCCGCTACTAACA TCGGATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTCAGCAGGCTTACCCTTATTTGATGCGGGAGT ] consensusID : consensus_6468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [TGGTGTTGGCAGCATTTACATCTACCCAATNCTNCCAGCGCCCAGCAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCTTACCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCCTTCCGAACTTCTACGAAGTTGCAGTCGGTAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCAGGAGTTGTTTGTGCCTCTGGAAACANNGAGCGATCCGNAACTTCGGATATAGCACTTCGCCTAAGCTAGCCCATTACATTGCAAGTTACCAGCCACGCCACCAGTACCAGTGCATTCCCGNCTAACNTAAACAT] [+] EMBL BX619377 [TGGTGTTGGCAGCATTTACATCTACCCAATNCTNCCAGCGCCCAGCAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCTTACCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCCTTCCGAACTTCTACGAAGTTGCAGTCGGTAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCAGGAGTTGTTTGTGCCTCTGGAAACANNGAGCGATCCGNAACTTCGGATATAGCACTTCGCCTAAGCTAGCCCATTACATTGCAAGTTACCAGCCACGCCACCAGTACCAGTGCATTCCCGNCTAACNTAAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6468#0 CCGCGGACGCGTGGGCGGACGCGCGGTTTCCCTTCAGCAAAATGTGTGTTTTACGGCAAG 60 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 TCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACT--CCCAAAC--TCCAGCGCCCAA 116 consensus_6468#1 ---------------TGGTGTTGGCAGCATTTACATCTACCCAATNCTNCCAGCGCCCAG 45 ******** ***** ** ** ***** ********** consensus_6468#0 CAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTG 176 consensus_6468#1 CAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTG 105 ************************************************************ consensus_6468#0 GACATTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGT 236 consensus_6468#1 GACATTGAACAAGTGCCTTACCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGT 165 ***************** ** *************************************** consensus_6468#0 GGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATC 296 consensus_6468#1 GGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCCTT 225 ********************************************************* * consensus_6468#0 CCGAACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTG 356 consensus_6468#1 CCGAACTTCTACGAAGTTGCAGTCGGTAGCACCAATCCATACGAGGGCCAAAGGATCTTG 285 *********************** ** ********************************* consensus_6468#0 GTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAA-CTTCG-ATATAGCAC 414 consensus_6468#1 GTGCAGGAGTTGTTTGTGCCTCTGGAAACANNGAGCGATCCGNAACTTCGGATATAGCAC 345 **** ***************** ******* ********** * ***** ********* consensus_6468#0 TCG--CGAAGCTGGCCCAT-ACATTGCAGTACAGCAGCACAGTGCAGTGCATTCCGCTAC 471 consensus_6468#1 TTCGCCTAAGCTAGCCCATTACATTGCAAGTTACCAGC-----------CACGCCACCAG 394 * * ***** ****** ******** * **** ** ** * * consensus_6468#0 TAACATCGGATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATA 531 consensus_6468#1 TACCAGTGCATTCCCGNCTAACNTA-AACAT----------------------------- 424 ** ** * ** * * ** * * * consensus_6468#0 CAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGG 591 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 ACTACTGTCAGCAGGCTTACCCTTATTTGATGCGGGAGTTTATGCTGTGTGCTGGGGTTT 651 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 AAGGAAAGTAAGGT 665 consensus_6468#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||