These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1503 fasta sequence [CCGCCCACGCGTCCGCGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCGTCACAGCCGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATGGGCGAGGGCGGCCCCAGCATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCACGATCTTCGACTCGGTGCGCGACATGCCAGTGCGATCGAACTTTCCCGGCTTCCACCAGGGATTCAAGCGTGAGCCATCGCCCGGTGCTACGCGAACGTCGCCCTTCCCGGACATGTGGTCCGAGCAGCCGAACCATGTGCCTCGCGGAACGTCAATTCCTAGACAAACGCCTTCACCATCGACCGCGCAGCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCACCAGCCACAGCAACCAAAACCAAACACGCAGCAGCAAGTACCGCGGCAACAGCAGCCACCGGCGGCGCAACAGCAGCATGCGGATGCGCAGCAGCACCCGGCCGCCGCTGCTGGACAGGATCAACCGGACAGCCGCCCAAAGATGTCCGCCAAGGAGGATCCGCTTACGAAAATACAGAAGATACAGAAAGACGTGCTCGCCATCTTCGACCAGGTGGAACAGTTCAAGGGCGGCAAGGAGGGGAAGAAGGACAAGGCGTACATCTATCTGGACGAGATGCTGACGCAGAACCTGCTGAAGCTGGACTCGATCGATGCCGAGGATCAGCCGCAGATTAAGTCCGCCCGGAAGGAGGCCATCAAGAGCATAAACACCTGCATCGCGGTGCTGGAGGCGAAGGCGGAAGCCGGTGCTAGCGGGAGCGCCAACGCCAGTTCCGGCTCGATCGGGAAGGCGAACAGTAGCAGCAACGGTTTGAGCGCGAACGGTATGGAGCAGTCCGGCTCGAACACGTCAATTCCTCACTCGTCGTCCAACTCTAGTCAACAACAACAGCAGCAGCGGGGCAATGAGGTATCGAGCCAGTAGTGTGTGTGTTAGCGCGCGCGTGTGTGTGTGTCTGTGAACATGCAGAAAACGGTTGCCATGGCGCCTCGGTCGACGACCATCCTGTTTTGCCGAGCATGAGAGCATCCGTGTCGATGACGACGCTTGGTTTGTCCTGTTCGCCAGCCTACTTTGTGTCATATTTATAGCCCGTTGGTGGTTTCTTCCTGGCACCAACCGCTCTGCATGAAGAACCGTCATTTCATTCGACCGTCCGGATCTTCAACGATCATATGTTTCATTTGTTCATCGTTACTCTCTCCTTCCTTTTTCATCGCTAGTTTCATAACCAAGTTTCAGTGAGGCTTCAACAGAGTGCTTCAGGTTGATAGGTTCTGCATGAATTTGTAATTTGCCTAAATTAAGATTGAT] [+] EMBL BM637299 [CCGCCCACGCGTCCGCGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCGTCACAGCCGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATGGGCGAGGGCGGCCCCAGCATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCACGATCTTCGACTCGGTGCGCGACATGCCAGTGCGATCGAACTTTCCCGGCTTCCACCAGGGATTCAAGCGTGAGCCATCGCCCGGTGCTACGCGAACGTCGCCCTTCCCGGACATGTGGTCCGAGCAGCCGAACCATGTGCCTCGCGGAACGTCAATTCCTAGACAAACGCCTTCACCATCGACCGCGCAGCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCACCAGCCACAGCAACCAAAACCAAACACGCAGCAGCAAGTACCGCGGCAACAGCAGCCACCGGCGGCGCAACAGCAGCATGCGGATGCGCAGCAGCACCCGGCCGCCGCTGCTGGACAGGATCAACCGGACAGCCGCCCAAAGATGTCCGCCAAGGAGGAT ] [+] EMBL AGA280648 [ GGATCAACCGGACAGTCGCCCAAAGATGTCCGCCAAGGAGGATCCGCTTACGAAAATACAGAAGATACAGAAAGACGTGCTCGCCATCTTCGACCAGGTGGAACAGTTCAAGGGCGGCAAGGAGGGGAAGAAGGACAAGGCGTACATCTATCTGGACGAGATGCTGACGCAGAACCTGCTGAAGCTGGACTCGATCGATGCCGAGGATCAGCCGCAGATTAAGTCCGCCCGGAAGGAGGCCATCAAGAGCATAAACACCTGCATCGCGGTGCTGGAGGCGAAGGCGGAAGCCGGTGCTAGCGGGAGCGCCAACGCCAGTTCCGGCTCGATCGGGAAGGCGAACAGTAGCAGCAACGGTTTGAGCGCGAACGGTATGGAGCAGTCCGGCTCGAACACGTCAATTCCTCACTCGTCGTCCAACTCTAGTCAACAACAACAGCAGCAGCGGGGCAATGA ] [+] EMBL BM589700 [ CCGGGAAGGAGGCCATCAAGAGCATAAACACCTGCATCGCGGTGCTGGAGGCGAAGGCGGAAGCCGGTGCTAGCGGGAGCGCCAACGCCAGTTCCGGCTCGATCGGGAAGGCGAACAGTAGCAGCAACGGTTTGAGCGCGAACGGTATGGAGCAGTCCGGCTCGAACACGTCAATTCCTCACTCGTCGTCCAACTCTAGTCAACAACAGCAGCAGCAGCAGGCCAATGAGGTATCGAGCCAGTAGTGTGTGTGTTAGCGCGCGCGTGTGTGTGTGTCTGTGAACATGCAGAAAACGGTTGCCATGGCGCCTCGGTCGACGACCATCCTGTTTTGCCGAGCATGAGAGCATCCGTGTCGATGACGACGCTTGGTTTGTCCTGTTCGCCAGCCTACTTTGTGTCATATTTATAGCCCGTTGGTGGTTTCTTCCTGGCACCAACCGCTCTGCATGAAGAACCGTCATTTCATTCGACCGTCCGGATCTTCAACGATCATATGTTTCATTTGTTCATCGTTACTCTCTCCTTCCTTTTTCATCGCTAGTTTCATAACCAAGTTTCAGTGAGGCTTCAACAGAGTGCTTCAGGTTGATAGGTTCTGCATGAATTTGTAATTTGCCTAAATTAAGATTGAT] consensusID : consensus_6489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTGCAGCTGTGGAGAAAAACTGGAACGAAAAAATTGATTTTCGCGTTATTCAACCACTCTGGTGCGTGCTATCTGTGGGCAAAGTGCAGCGGGACAGTGAAAACCAGCGCTCGGAAGATAGGTCGTGCGAGCCCCAGCGCCCGTACTGCTGAAACGTGGAGTGTGGAAAATTCGCCAAGGTTCTAGAACAAACCGCATTGGCGTTTCGTCGCCTGGTCGCGCGGGGTTGCGGAAGAAAAGAAGGAGTGCGAGAGTGTGTGTGTGTGTGACAAATAAATAGCAAAGCAACCAGACAGGCCTGGTACACTGTAGGGATCGTACGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCGTCACAGCCGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATGGGCGAGGGCGGCCCCAGCATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCACGATCTTCGACTCGGTGCGCGACATGCCAGTGCGATCGAACTTTCCGGGCTTCCACCAGGGCTTCAAG] [+] EMBL BM614000 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGCAGCTGTGGAGAAAAACTGGAACGAAAAAATTGATTTTCGCGTTATTCAACCACTCTGGTGCGTGCTATCTGTGGGCAAAGTGCAGCGGGACAGTGAAAACCAGCGCTCGGAAGATAGGTCGTGCGAGCCCCAGCGCCCGTACTGCTGAAACGTGGAGTGTGGAAAATTCGCCAAGGTTCTAGAACAAACCGCATTGGCGTTTCGTCGCCTGGTCGCGCGGGGTTGCGGAAGAAAAGAAGGAGTGCGAGAGTGTGTGTGTGTGTGACAAATAAATAGCAAAGCAACCAGACAGGCCTGGTACACTGTAGGGATCGTACGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCGTCACA ] [+] EMBL BM614015 [ CCGCCCACGCGTCC GCAGCTGTGGAGAAAAACTGGAACGAAAAAATTGATTTTCGCGTTATTCAACCACTCTGGTGCGTGCTATCTGTGGGCAAAGTGCAGCGGGACAGTGAAAACCAGCGCTCGGAAGATAGGTCGTGCGAGCCCCAGCGCCCGTACTGCTGAAACGTGGAGTGTGGAAAATTCGCCAAGGTTCTAGAACAAACCGCATTGGCGTTTCGTCGCCTGGTCGCGCGGGGTTGCGGAAGAAAAGAAGGAGTGCGAGAGTGTGTGTGTGTGTGACAAATAAATAGCAAAGCAACCAGACAGGCCTGGTACACTGTAGGGATCGTACGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCGTCACAGCCGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATGGGCGAGGGCGGCCCCAGCATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCACGATCTTCGACTCGGTGCGCGACATGCCAGTGCGATCGAACTTTCCGGGCTTCCACCAGGGCTTCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6489#0 CCGCCCACGCGTCCGCGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGA 60 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 CATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATT 120 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 CCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCG 180 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 TCACAGCCGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATG 240 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 GGCGAGGGCGGCCCCAGCATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCACG 300 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 ATCTTCGACTCGGTGCGCGACATGCCAGTGCGATCGAACTTTCCCGGCTTCCACCAGGGA 360 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 TTCAAGCGTGAGCCATCGCCCGGTGCTACGCGAACGTCGCCCTTCCCGGACATGTGGTCC 420 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 GAGCAGCCGAACCATGTGCCTCGCGGAACGTCAATTCCTAGACAAACGCCTTCACCATCG 480 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 ACCGCGCA-GCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCACCAGCCACAGCAACC 539 consensus_6489#1 -CCGCCCACGCGTCCGCCCACGCGTCCGGTGCAGCTGTGGAGAAA--AACTGGAACGAAA 57 **** ** ** ***** *** *** ***** * * * * * * * * consensus_6489#0 AAAACCAAACACGCAGCAGCAAGTACCGCGGCAACAGCAGCCACCGGCGGCGCAACAGCA 599 consensus_6489#1 AAATTGATTTTCGCGTTATTCA--ACCACTCTGGTGCGTGCTATCTGTGGGCAAAGTGCA 115 *** * *** * * *** * ** * * * ** ** *** consensus_6489#0 GCATGCGGATGCGCAGCAGCACCCGGCCGCCGCTGCTGGACAGGATCAACCGGACAGCCG 659 consensus_6489#1 GCGGGACAGTGAAAACCAGCGCTCGGAAGATAG-GTCGTGCGAGCCCCAGCGCCCGTACT 174 ** * ** * **** * *** * * * * * * * ** * * consensus_6489#0 CCCAAAGATGTCCGCCAAGGAGGATCCGCTTACGAAAATACAGAAGATACAGAAA-GACG 718 consensus_6489#1 GCTGAA-ACGTGGAGTGTGGAAAATTCGC---CAAGGTTCTAGAACAAACCGCATTGGCG 230 * ** * ** *** ** *** * * * **** * ** * * * ** consensus_6489#0 TGCTCGCCATCTTCGACCAGGTGGAACAGTTCAAGGGCGGCAAGGAGGGGAAGAAGGACA 778 consensus_6489#1 T-TTCGTCGCCT--GGTCGCGCGGG---GTT-----GCGG-AAGAAAAGAAGGAGTGCGA 278 * *** * ** * * * ** *** **** *** * * * ** * * consensus_6489#0 AGGCGTACATCTATCTGGACGAGATGCTGACGCAG-AACCTGCTGAAGCTGG-ACTCGAT 836 consensus_6489#1 GAGTGTGTGTGTGTGTG-ACAAATAAATAGCAAAGCAACCAGACAGGCCTGGTACACTGT 337 * ** * * * ** ** * * * ** **** * **** ** * * consensus_6489#0 CGATGCCGAGGATCAGCCGCAG-ATTAAGTCCGCCCGGAAGGAGGCCATCAAGAGCATA- 894 consensus_6489#1 AGGGATCGTACGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAG 397 * ** * ** * * * **** * * * * * * **** consensus_6489#0 AACACCTGCATCGCGGTGCTGGAGGCGAAGGCGGAAGCCGGTGCTAGCGGGAGCGCCAAC 954 consensus_6489#1 AATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGAT 457 ** * ** ** * * ** * * *** * * ** * consensus_6489#0 GCCAGTTCCGGCTCGATCGGGAAGGC-GAACAGTAGCAGCAACGGTTTGAGCGCGAACGG 1013 consensus_6489#1 TTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAA----AACGCCCGAATCGCAACCGT 513 ** * ******** ** ** ** ** **** * *** * ** consensus_6489#0 TATGGAGCAGTCCGGCTCGAACA-CGTCAATTCCTCACTCGTCGTCCAACTCTAGTCAAC 1072 consensus_6489#1 CACAGC-CGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATG 572 * * * ** ** * ** * ** * * ** *** ** * ** consensus_6489#0 AACAACAGCAGCAGCGGGGCAATGAGGTATCGAGCCAGTAGTGTGTGTGTTAGCGCGCGC 1132 consensus_6489#1 GGCGAGGGCGGCCCCAG--CATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCA 630 * * ** ** * * ** ** * * **** * * * * * * * ** consensus_6489#0 GTGTGTGTGTGTCTGTGAACATGCAGAAAACGGTTGCCATGGCGCCTCGGTCGACGACCA 1192 consensus_6489#1 CGATCTTCGACTCGGTG----CGCGACATGCCAGTGCGATCGAACTTTC-CGGGCTTCCA 685 * * * ** *** ** * * *** ** * * * * * *** consensus_6489#0 TCCTGTTTTGCCGAGCATGAGAGCATCCGTGTCGATGACGACGCTTGGTTTGTCCTGTTC 1252 consensus_6489#1 CCAGGGCTT--CAAG--------------------------------------------- 698 * * ** * ** consensus_6489#0 GCCAGCCTACTTTGTGTCATATTTATAGCCCGTTGGTGGTTTCTTCCTGGCACCAACCGC 1312 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 TCTGCATGAAGAACCGTCATTTCATTCGACCGTCCGGATCTTCAACGATCATATGTTTCA 1372 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 TTTGTTCATCGTTACTCTCTCCTTCCTTTTTCATCGCTAGTTTCATAACCAAGTTTCAGT 1432 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 GAGGCTTCAACAGAGTGCTTCAGGTTGATAGGTTCTGCATGAATTTGTAATTTGCCTAAA 1492 consensus_6489#1 ------------------------------------------------------------ consensus_6489#0 TTAAGATTGAT 1503 consensus_6489#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||