These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 878 fasta sequence [GCAAGAATCGGCACGAGGGCGGGGGAAAAACTCAATCCGCCGCAGCTGGTTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGCCGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAGCCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGGTAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGGTGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGGGAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGGAAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCCTGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCAAAGGCGACAGCCCTCGATGAAGCAGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGCATTTCTGCTGCTGCTGCTGCTGGCTGGAAGAGGTGGGATCGCTAAGAAAGAAGGAGCTAANTTTAGGAAACCAGAACAGGGGTGAAATGATTACTTGTGTGTGTGTATGCGGTACTACTTTACACTGACATAGTACACAAAGGGGCAAATGGGAGTTGAAAGCCGGAATCCATTTTGCAAGAAACCGCATTTGGGACCCAGAAATTACCGGATTCGACCGAAAAGCCTGGGTTGCCCNTGGTACCTGGATTCCCCTTTAATCGGGGACACTNCNAAAGGACAGTAGAGCG] [+] EMBL BX467847 [GCAAGAATCGGCACGAGGGCGGGGGAAAAACTCAATCCGCCGCAGCTGGTTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGCCGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAGCCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGGTAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGGTGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGGGAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGGAAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCCTGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCAAAGGCGACAGCCCTCGATGAAGCAGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGCATTTCTGCTGCTGCTGCTGCTGGCTGGAAGAGGTGGGATCGCTAAGAAAGAAGGAGCTAANTTTAGGAAACCAGAACAGGGGTGAAATGATTACTTGTGTGTGTGTATGCGGTACTACTTTACACTGACATAGTACACAAAGGGGCAAATGGGAGTTGAAAGCCGGAATCCATTTTGCAAGAAACCGCATTTGGGACCCAGAAATTACCGGATTCGACCGAAAAGCCTGGGTTGCCCNTGGTACCTGGATTCCCCTTTAATCGGGGACACTNCNAAAGGACAGTAGAGCG] consensusID : consensus_650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [TGNCCCAAATCAATTCCCGCACTTGCGCCACCCANTCGCACGCCCAATAGTTCTCCACCAGCCGTACCCGGCGCAGGGCCGGTGCAAAGCGGGGGAAAAACTCAATCCGCCGCAGCTGGTTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGCCGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAGCCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGGTAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGGTGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGGGAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGGAAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCCTGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCAAAGGCGACGCCCTCGATGAAGCAGGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGC] [-] EMBL BX627210 [TGNCCCAAATCAATTCCCGCACTTGCGCCACCCANTCGCACGCCCAATAGTTCTCCACCAGCCGTACCCGGCGCAGGGCCGGTGCAAAGCGGGGGAAAAACTCAATCCGCCGCAGCTGGTTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGCCGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAGCCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGGTAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGGTGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGGGAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGGAAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCCTGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCAAAGGCGACGCCCTCGATGAAGCAGGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_650#0 ------------------------------------------------------------ consensus_650#1 TGNCCCAAATCAATTCCCGCACTTGCGCCACCCANTCGCACGCCCAATAGTTCTCCACCA 60 consensus_650#0 ----------GCA-AGAATCGGCACGAGGGCGGGGGAAAAACTCAATCCGCCGCAGCTGG 49 consensus_650#1 GCCGTACCCGGCGCAGGGCCGGTGCAAAG-CGGGGGAAAAACTCAATCCGCCGCAGCTGG 119 ** ** *** * * * ****************************** consensus_650#0 TTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGC 109 consensus_650#1 TTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGC 179 ************************************************************ consensus_650#0 CGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAG 169 consensus_650#1 CGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAG 239 ************************************************************ consensus_650#0 CCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGG 229 consensus_650#1 CCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGG 299 ************************************************************ consensus_650#0 TAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGG 289 consensus_650#1 TAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGG 359 ************************************************************ consensus_650#0 TGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGG 349 consensus_650#1 TGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGG 419 ************************************************************ consensus_650#0 GAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGG 409 consensus_650#1 GAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGG 479 ************************************************************ consensus_650#0 AAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCC 469 consensus_650#1 AAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCC 539 ************************************************************ consensus_650#0 TGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCA 529 consensus_650#1 TGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCA 599 ************************************************************ consensus_650#0 AAGGCGACAGCCCTCGATGAAGCAG-TGGAGTTGGGCTGCACACGGGAGCATTCGATCGC 588 consensus_650#1 AAGGCGAC-GCCCTCGATGAAGCAGGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGC 658 ******** **************** ********************************** consensus_650#0 ATTTCTGCTGCTGCTGCTGCTGGCTGGAAGAGGTGGGATCGCTAAGAAAGAAGGAGCTAA 648 consensus_650#1 ------------------------------------------------------------ consensus_650#0 NTTTAGGAAACCAGAACAGGGGTGAAATGATTACTTGTGTGTGTGTATGCGGTACTACTT 708 consensus_650#1 ------------------------------------------------------------ consensus_650#0 TACACTGACATAGTACACAAAGGGGCAAATGGGAGTTGAAAGCCGGAATCCATTTTGCAA 768 consensus_650#1 ------------------------------------------------------------ consensus_650#0 GAAACCGCATTTGGGACCCAGAAATTACCGGATTCGACCGAAAAGCCTGGGTTGCCCNTG 828 consensus_650#1 ------------------------------------------------------------ consensus_650#0 GTACCTGGATTCCCCTTTAATCGGGGACACTNCNAAAGGACAGTAGAGCG 878 consensus_650#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||