These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1507 fasta sequence [TTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCACAGCATCGTCATCATCAAGCTCGATATACTCCACGGCACATTTCCGAGGAAACCAACCGCGAACCCGCTTCGGAATAGTTTTTTTCGTTGGTTCCTGTAGTTTTTCGCCAAACAACCAGTGCTTTCTCCATCTGGTAACACGAACGATGTCATCAACCTCAAGCTTAATTCGCGGCTCATCGGTAAGCGGAGGCGAAAGGCACACCGACGGTCCTTGCGAAAACAGTGGAAACCAGCTTCCCGTCGCCGGTCGAACAATGGTGTACGTCCGTGTTCGTGCCCGTTTTTCCTCTTTTTGTGCTAATTGTTCACGCGTTAGTTTAACTGGTCGCATCCTTCGACGACGGGCCATTCGTACCCGTTACCGACCGGCCGGCAGGTAAAGTTGATGACCTGCTTCACGTTGCTCCATCGGCCCAGATCGTAAGGATACACGAAGGTCTGCTCGTTGCGTTCCGCTCTAAACCGCGCCTTCTCCACAATCCAATCCTCGATGGCGGTCCGGTTGTTCAGGATGGATCGCACCTGGTACACTAACAAGGCGCCCACCGTGAGTACGACCCCGATGGCCAGCCCGATGTTGAACACGCACAGCACCAGACTCGAAACCGTTAGCTTCACGTTCACTTTCGAGAGCTGGCCAAAAATATACGTACCAGTTGCGATACAGGCCCACGTACAGCGAGGAGCCCAATATCACCGTACCGTGGATGCAGCCGAGCACGGCGAACGCTAGAAAGGCGGTAAAGTAGCCATGGTTGGCCCAACCGACGCAGTTGTTGATCCACGGGCAGTGGTGATCCATCTTGATCACGCACCGGTCACACTTCCGGCAGTGGTGCGAACGCGGCGCCTTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCGCTGAGTGATGGGCCGGTCGCCATTTGAGCCGCAAATAGCCCGGCCCGGTTAGCGAGGCCATCACGAAGTAAAACCCGGTGCCGAGGGACAGCAGCACAAATACTGTCTGGTTGATGAGCGCCCACAGGGAAGTGTGCGAGGGCCACCACATGCTGTTCATGTAAATGGTCATCACTGTAATCGATTGTATAATTCCGATTGCAGTTAATGGTCCCCAGTGGAGGAAACGCCGGATGGAATTGTACCACCCGAGGAACATTGTTGCGCGGGCACTGTGCTGCGCCTAGCTGCCTGTATCTGTGCGAAAACTGATGTATGGACCTTTCAGCAACGCTCCTAGTGCTGAGTGTTTGTGTATTTTCCCGACGTTTGAACGGCACACAGTTTTTACATTTTGCCCGCTTTCGTAGGCACTAATTTTCAACAATTTCAGTCACCGTTGCTAAATACCATAATTACCACACTGCCACAAAACCAAAGGTGTCTGGTCTCTGTTGCTTTGAAGTGCGCTGTTTTTTCTCTTCTGCTTGCACCAAACGTTAATCATCGCTTACCATATCAAAAAGAT] [+] EMBL CNS08EIX [TTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCACAGCATCGTCATCATCAAGCTCGATATACTCCACGGCACATTTCCGAGGAAACCAACCGCGAACCCGCTTCGGAATAGTTTTTTTCGTTGGTTCCTGTAGTTTTTCGCCAAACAACCAGTGCTTTCTCCATCTGGTAACACGAACGATGTCATCAACCTCAAGCTTAATTCGCGGCTCATCGGTAAGCGGAGGCGAAAGGCACACCGACGGTCCTTGCGAAAACAGTGGAAACCAGCTTCCCGTCGCCGGTCGAACAATGGTGTACGTCCGTGTTCGTGCCCGTTTTTCCTCTTTTTGTGCTAATTGTTCACGCGTTAGTTTAACTGGTCGCATCCTTCGACGACGGGCCATTCGTACCCGTTACCGACCGGCCGGCAGGTAAAGTTGATGACCTGCTTCACGTTGCTCCATCGGCCCAGATCGTAAGGATACACGAAGGTCTGCTCGTTGCGTTCCGCTCTAAACCGCGCCTTCTCCACAATCCAATCCTCGATGGCGGTCCGGTTGTTCAGGATGGATCGCACCTGGTACACTAACAAGGCGCCCACCGTGAGTACGACCCCGATGGCCAGCCCGATGTTGAACACGCACAGCACCAGACTCGAAACCGTTAGCTTCACGTTCACTTTCGAGAGCTGGCCAAAAATATACGTACCAGTTGCGATACAGGCCCACGTACAGCGAGGAGCCCAATATCACCGTACCGTGGATGCAGCCGAGCACGGCGAACGCTAGAAAGGCGGTAAAGTAGCCATGGTTGGCCCAACCGACGCATTGGTTGATCCACGGGCAGTGGTGATCCATCTTGATCACGCACCGGTCACACTTCCGGCAGTTGTGCGAACGCGGCGCCTTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCG ] [-] EMBL CNS08EIW [ ATGCAGCCGAGCACGGCGAACGCTAGAAAGGCGGTAAAGTAGCCATGGTTGGCCCAACCGACGCAGTTGTTGATCCACTTTCAGTGGTGATCCATCTTGATCACGCACCGGTCACACTTCCGGCAGTGGTGCGAACGCGGCGCCTTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCGCTGAGTGATGGGCCGGTCGCCATTTGAGCCGCAAATAGCCCGGCCCGGTTAGCGAGGCCATCACGAAGTAAAACCCGGTGCCGAGGGACAGCAGCACAAATACTGTCTGGTTGATGAGCGCCCACAGGGAAGTGTGCGAGGGCCACCACATGCTGTTCATGTAAATGGTCATCACTGTAATCGATTGTATAATTCCGATTGCAGTTAATGGTCCCCAGTGGAGGAAACGCCGGATGGAATTGTACCACCCGAGGAACATTGTTGCGCGGGCACTGTG TGCGCCTAGCTGCCTGTATCTGTGCGAAAACTGATGTATGGACCTTTCAGCAACGCTCCTAGTGCTGAGTGTTTGTGTATTTTCCCGACGTTTGAACGGCACACAGTTTTTACATTTTGCCCGCTTTCGTAGGCACTAATTTTCAACAATTTCAGTCACCGTTGCTAAATACCATAATTACCACACTGCCACAAAACCAAAGGTGTCTGGTCTCTGTTGCTTTGAAGTGCGCTGTTTTTTCTCTTCTGCTTGCACCAAACGTTAATCATCGCTTACCATATCAAAAAGAT] [-] EMBL BX625065 [ AGCCGAGCACGGCGAACGCTAGAAAGGCGGTAAAGTAGCCATGGTTGGCCCAACCGACGCAGTTGTTGATCCACGGGCAGTGGTGATCCATCTTGATCACGCACCGGTCACACTTCCGGCAGTGGTGCGAACGCGGCGCCTTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCGCTGAGTGATGGGCCGGTCGCCATTTGAGCCGCAAATAGCCCGGCCCGGTTAGCGAGGCCATCACGAAGTAAAACCCGGTGCCGAGGGACAGCAGCACAAATACTGTCTGGTTGATGAGCGCCCACAGGGAAGTGTGCGAGGGCCACCACATGCTGTTCATGTAAATGGTCATCACTGTAATCGATTGTATAATTCCGATTGCAGTTAATGGTCCCCAGTGGAGGAAACGTCGGATGGAATTGTACCACCCGAGGAACATTGTTGCGCGGGCACTGTGCTGCGCCTAGCTGCCTGTATCTGTGCGAAAACTGATGTATGGACCTTTCAGCAACGCTCCTAGTGTTGAGTGTTTGTGTATTTTCCCGACGTTTGAACGGCACACAGTTTTTACATTTTGCCCGCTTTCGTAGCCACTAATTTTCAACAATTTCAGTCACCGTTGCTAAATACCATAATTACCACACTGCCACAAAACCAAAGGTGTCTGGTCTCTGTTGCc ] [-] EMBL BM586948 [ CAGTGGTGCGAACGCGGCGCCTTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCGCTGAGTGATGGGCCGGTCGCCATTTGAGCCGCAAATAGCCCGGCCCGGTTAGCGAGGCCATCACGAAGTAAAACCCGGTGCCGAGGGACAGCAGCACAAATACTGTCTGGTTGATGAGCGCCCACAGGGAAGTGTGCGAGGGCCACCACATGCTGTTCATGTAAATGGTCATCACTGTAATCGATTGTATAATTCCGATTGCAGTTAATGGTCCCCAGTGGAGGAAACGCCGGATGGAATTGTACCACCCGAGGAACATTGTTGCGCGGGCACTGTGCTGCGCCTAGCTGCCTGTATCTGTGCGAAAACTGATGTATGGACCTTTCAGCAACGCTCCTAGTGCTGAGTGTTTGTGTATTTTCCCGACGTTTGAACGGCACACAGTTTTTACATTTTGCCCGCTTTCGTAGGCACTAATTTTCAACAATTTCAGTCACCGTTGCTAAATACCATAATTACCACACTGCCACAAAACCAAAGGTGTCTGGTCTCTGTTGCTTTGAAGTGCGCTGTTTTTTCTCTTCTGCTTGCACCAAACGTTAATCATCGCTTACCcgg ] consensusID : consensus_6522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CTTTTCTTACATCAGAACAATATTTATCTTTCAAATCTGTTGCTTAATGTACGGTGCACACTCTGTGAGGGCAACTATACAGTCTGTTCCCGAGTAATGCGGTTCTCGATATGCGCGGATTTGGAAATAAGCGGATGTTCTGAATTAAGTTTTTTGGCCATGTGTCAAATCAGTAATCAGTTTGCTCCAAAAATTATACTCTCTGCTTGTACAAACATATTGAAACAAGTGAAGTTACATGAACATGTCATGAATCAAAACTACCCACTCTTCAATTGTATTTTTTGCAGAAAACCATGATATTTGCCATACGCGGATGTCTTCGGAACACATTCACCGCATATCTCGGGAACGACGGCATGTTCTCTTACTTGTTTCTTCTTCCAATGGTTTGTATTTCAAGCGTGTTTTTAAACGTCTTTTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCACAGCATCGTCATCATCAAGCTCGATATACTCCACGGCACATTTCCGAGGAAACCAACCGCGAACCCGCTTCGGAATAGTTTTTTTCGTTGGTTCCTGTAGTTTTTCGCCAAACAACCAGTGCTTTCTCCCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL BM596244 [CTTTTCTTACATCAGAACAATATTTATCTTTCAAATCTGTTGCTTAATGTACGGTGCACACTCTGTGAGGGCAACTATACAGTCTGTTCCCGAGTAATGCGGTTCTCGATATGCGCGGATTTGGAAATAAGCGGATGTTCTGAATTAAGTTTTTTGGCCATGTGTCAAATCAGTAATCAGTTTGCTCCAAAAATTATACTCTCTGCTTGTACAAACATATTGAAACAAGTGAAGTTACATGAACATGTCATGAATCAAAACTACCCACTCTTCAATTGTATTTTTTGCAGAAAACCATGATATTTGCCATACGCGGATGTCTTCGGAACACATTCACCGCATATCTCGGGAACGACGGCATGTTCTCTTACTTGTTTCTTCTTCCAATGGTTTGTATTTCAAGCGTGTTTTTAAACGTCTTTTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCACAGCATCGTCATCATCAAGCTCGATATACTCCACGGCACATTTCCGAGGAAACCAACCGCGAACCCGCTTCGGAATAGTTTTTTTCGTTGGTTCCTGTAGTTTTTCGCCAAACAACCAGTGCTTTCTCCCGGACGCGTGGGCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6522#0 TTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCACAGCATCGTCATCATCAA 60 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 GCTCGATATACTCCACGGCACATTTCCGAGGAAACCAACCGCGAACCCGCTTCGGAATAG 120 consensus_6522#1 ----------------------------------------CTTTTCTTACATCAGAACAA 20 * * ** *** * consensus_6522#0 TTTTTTTCGTTGGTTCCTGTAGTTTTTCGCCAAACAACCAGTGCTTTCTCCATCTGGTAA 180 consensus_6522#1 TATTTATCTTTCA-------AATCTGTTGCTTAATGTACGGTGCACACTCT-----GTGA 68 * *** ** ** * * * * ** ** * **** *** ** * consensus_6522#0 CACGAACGATGTCATCAACCTCAAGCTTAATTCGCGGCTCATCGGTAAGCGGAGGCGAAA 240 consensus_6522#1 GGGCAACTATACAGTCTGTTCCCGAGTAA---TGCGGTTC-TCGATATGCGCGGATTTGG 124 *** ** ** * * * **** ** *** ** *** * consensus_6522#0 GGCACACCGACGGTCCTTGCGAAAACAGTGGAAACCAGCTTCCCGTCGCCGGTCGAACAA 300 consensus_6522#1 ---AAATAAGCGGATGTTCTGAATTAAGTTT--TTTGGCCATGTGTCA--AATCAGTAAT 177 * * *** ** *** *** ** *** ** * consensus_6522#0 TGGTGTACGTCCGTGTTCGTGCCCGTTTTTCCTCTTTTTGTGCTAATTGTTCACGCGTTA 360 consensus_6522#1 CAGTTTGCTCCAAAAATTATACTCTCTGCTTGTACAAACATATTGAA-----ACAAGTGA 232 ** * * * * * * * * * * * * * ** ** * consensus_6522#0 GTTTAACTGGTCGCATCCTTCGACGACGGGCCATTCGTACCCGTTACCGACCGGCCGGCA 420 consensus_6522#1 AGTTACATGAACATGTCATGAATCAA--AACTACCCAC-TCTTCAATTGTATTTTTTGCA 289 *** ** * ** * * * * * * * * * *** consensus_6522#0 GGTAAAGTTGATGACCTGCTTCACGTTGCT-CCATCGGCCCAGATCGTAAGGATACACGA 479 consensus_6522#1 GAAAACCATGAT-ATTTGCCATACGCGGATGTCTTCGGAACACATTCACCGCATATCTCG 348 * ** **** * *** *** * * * **** ** ** * *** consensus_6522#0 AGGTCTGCTCGTTGCGTTCCGCTCTAAACCGCGCCTTCTCC--ACAATCCAATCCTCGAT 537 consensus_6522#1 GGAACGAC--GGCATGTTC---TCTTACTTGTTTCTTCTTCCAATGGTTTGTATTTCAAG 403 * * * * **** *** * * ***** * * * ** * consensus_6522#0 GGCGGTCCGGTTGTTCAGGATGGATCGCAC-CTGGTACACTAACAAGGCGCCCACCGTGA 596 consensus_6522#1 CGTGTTTTTAAACGTCTTTTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCA 463 * * * ** * ***** * *** * * *** * * consensus_6522#0 GTACGACCCCGATGGCCAGCCCGATGTTGAACACGCACAGCACCAGACTCGAAACCGTTA 656 consensus_6522#1 CAGCATCGTCATCATCAAGCTCGATAT---ACTC-CACGGCAC-ATTTCCGAGGAAACCA 518 * * * * *** **** * ** * *** **** * *** * consensus_6522#0 GCTTCACGTTCACTTTCGAGAGCTGGCCAAAAATATACGTACCAGTTGCGATACAGGCCC 716 consensus_6522#1 ACCGCGAACCCGCTTCGGA---------ATAGTTTTTTTCGTTGGTTCC--TGTAGTTTT 567 * * * *** ** * * * * *** * * ** consensus_6522#0 ACGTACAGCGAGGAGCCCAATATCACCGTACCGTGGATGCAGCCGAGCACGGCGAACGCT 776 consensus_6522#1 TCGCCAAACAACCAGTGCTTTCTCCCGGACGCGTGGGCGGACGCGTGGGCGG-------- 619 ** * * * ** * * ** * * ***** * * ** * *** consensus_6522#0 AGAAAGGCGGTAAAGTAGCCATGGTTGGCCCAACCGACGCAGTTGTTGATCCACGGGCAG 836 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 TGGTGATCCATCTTGATCACGCACCGGTCACACTTCCGGCAGTGGTGCGAACGCGGCGCC 896 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 TTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCGCTGAGTGATGGGCCGGT 956 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 CGCCATTTGAGCCGCAAATAGCCCGGCCCGGTTAGCGAGGCCATCACGAAGTAAAACCCG 1016 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 GTGCCGAGGGACAGCAGCACAAATACTGTCTGGTTGATGAGCGCCCACAGGGAAGTGTGC 1076 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 GAGGGCCACCACATGCTGTTCATGTAAATGGTCATCACTGTAATCGATTGTATAATTCCG 1136 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 ATTGCAGTTAATGGTCCCCAGTGGAGGAAACGCCGGATGGAATTGTACCACCCGAGGAAC 1196 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 ATTGTTGCGCGGGCACTGTGCTGCGCCTAGCTGCCTGTATCTGTGCGAAAACTGATGTAT 1256 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 GGACCTTTCAGCAACGCTCCTAGTGCTGAGTGTTTGTGTATTTTCCCGACGTTTGAACGG 1316 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 CACACAGTTTTTACATTTTGCCCGCTTTCGTAGGCACTAATTTTCAACAATTTCAGTCAC 1376 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 CGTTGCTAAATACCATAATTACCACACTGCCACAAAACCAAAGGTGTCTGGTCTCTGTTG 1436 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 CTTTGAAGTGCGCTGTTTTTTCTCTTCTGCTTGCACCAAACGTTAATCATCGCTTACCAT 1496 consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 ATCAAAAAGAT 1507 consensus_6522#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||