These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1132 fasta sequence [CCGGTCGCCCATTACCGTTTCTCCCCTTCCGTTCGCCGTACAACGTCATCAAGTGTCGCGCAGTAGCCTGCAAAGTTCATCCGCCTGGTGTCTGTGTAATTCCGCTGTAATTCCGGATTCGTTCGCAAAAGGCGCAGTAAACAACCGCAGTAAAGATGGCCGGTGCTAATCCATTCCAGAGTTTGCTGAAGGAGATCAACGTCAATGGCGAAACATTCCACTATTTCGACATTGCCTCATTCCCGGAGTATCGCGAACTTCCGTACAGTGTGCGCGTGCTGCTCGAGTCGGCCGTCCGGAACTGCGACAACTTCCAGGTGCTGGAAAAGGACGTGCGGGGCATCCTGCGATGGAAGCAGCTGAAGGGTACGCCGACCTCCGACGACGAGCTGGAGATCCCGTTCAAGCCGGCCCGCGTCATCCTGCAGGACTTTACCGGCGTCCCGGCGGTGGTCGATTTTGCGGCCATGCGTGACGCCGTGCTGAAGCTGGGCGGCGACCCCGACCGCATCAATCCCATCTGCCCGTCCGATCTGGTGATCGACCACTCGGTGCAGGTGGACTTTGCGCGCAGCGAGGACGCGCTGGCCAAGAATCAGGATCTGGAGTTCGAGCGCAACAAGGAGCGGTTCACGTTTCTGAAGTGGGGAGCGAAGGCGTTCAACAACATGCTCATCATTCCGCCCGGCTCGGGCATCGTGCACCAGGTCAATCTGGAGTATTTGGCGCGCGTCGTGTTTCAGGACGCGGCGAAGGAGGGCGCAACGCGGATGCTGTACCCGGACAGTGTCGTCGGTACGGACTCGCACACCACCATGATCAATGGGCTCGGTGTGGTGGGATGGGGTGTCGGTGGCATCGAGGCCGAGGCGGTTATGCTCGGTCAGGCGATCTCGATGCTGCTGCCGGAGGTGATCGGCTACAAGCTGGTGGGCAAGCTGAACCCGCTCGTCACGTCCACCGATCTTGTGCTGACCATCACGAAGCATCTGCGCCAGATCGGTGTGGGTGGGGAAGTTCGTTGAGTTCTTTGGCCCGGGCGTGAGCGAGCTGTCCATTGCGGATCGGGCCACCATCAGCAACATGTGCCCGGAGTACGGTGCCACGGTCGGTTATTTCCCGGTGGATAAGA] [+] EMBL BM648347 [CCGGTCGCCCATTACCGTTTCTCCCCTTCCGTTCGCCGTACAACGTCATCAAGTGTCGCGCAGTAGCCTGCAAAGTTCATCCGCCTGGTGTCTGTGTAATTCCGCTGTAATTCCGGATTCGTTCGCAAAAGGCGCAGTAAACAACCGCAGTAAAGATGGCCGGTGCTAATCCATTCCAGAGTTTGCTGAAGGAGATCAACGTCAATGGCGAAACATTCCACTATTTCGACATTGCCTCATTCCCGGAGTATCGCGAACTTCCGTACAGTGTGCGCGTGCTGCTCGAGTCGGCCGTCCGGAACTGCGACAACTTCCAGGTGCTGGAAAAGGACGTGCGGGGCATCCTGCGATGGAAGCAGCTGAAGGGTACGCCGACCTCCGACGACGAGCTGGAGATCCCGTTCAAGCCGGCCCGCGTCATCCTGCAGGACTTTACCGGCGTCCCGGCGGTGGTCGATTTTGCGGCCATGCGTGACGCTGTGCTGAAGCTGGGCGGCGACCCCGACCGCATCAATCCCATCTGCCCGTCCGATCTGGTGATCGACCACTCGGTGCAGGTGGACTTTGCGCGCAGCGAGGACGCGCTGGCCAAGAATCAGGATCTGGAGTTCGAGCGCAACAAGGAGCGGTTCACGTTTCTGAAGTGGGGAGCGAAGGCGTTCAACAACATGCTCA ] [+] EMBL BM586055 [ ccgCTGCAAAGTTCATCCGCCTGGTGTCTGTGTAATTCCGCTGTAATTCCGGATTCGTTCGCAAAAGGCGCAGTAAACAACCGCAGTAAAGATGGCCGGTGCTAATCCATTCCAGAGTTTGCTGAAGGAGATCAACGTCAATGGCGAAACATTCCACTATTTCGACATTGCCTCATTCCCGGAGTATCGCGAACTTCCATACAGTGTGCGCGTGCTGCTCGAGTCGGCCGTCCGGAACTGCGACAACTTCCAGGTGCTGGAAAAGGATGTGCGGGGCATCCTGCGCTGGAAGCAGCTGAAGGGTACGCCGACCTCCGACGACGAGCTGGAGATCCCGTTCAAGCCGGCCCGCGTCATCCTGCAGGACTTTACCGGCGTCCCGGCGGTGGTCGATTTTGCGGCCATGCGTGACGCCGTGCTGAAGCTGGGCGGCGACCCCGACCGCATCAATCCCATCTGCCCGTCCGATCTGGTGATCGACCACTCGGTGCAGGTGGACTTTGCGCGCAGCGAGGACGCGCTGGCCAAGAATCAGGATCTGGAGTTCGAGCGCAACAAGGAGCGGTTCACGTTTCTGAAGTGGGGAGCGAAGGCGTTCAACAACATGCTCATCATTCCGCCCGGCTCGGGCATCGTG ] [+] EMBL BM616455 [ ccgcaCCTGGTGTCTGTGTAATTCCGCTGTAATTCCGGATTCGTTCGCAAAAGGCGCAGTAAACAACCGCAGTAAAGATGGCCGGTGCTAATCCATTCCAGAGTTTGCTGAAGGAGATCAACGTCAATGGCGAAACATTCCACTATTTCGACATTGCCTCATTCCCGGAGTATCGCGAACTTCCGTACAGTGTGCGCGTGCTGCTCGAGTCGGCCGTCCGGAACTGCGACAACTTCCAGGTGCTGGAAAAGGACGTGCGGGGCATCCTGCGATGGAAGCAGCTGAAGGGTACGCCGACCTCCGACGACGAGCTGGAGATCCCGTTCAAGCCGGCCCGCGTCATCCTGCAGGACTTTACCGGCGTCCCGGCGGTGGTCGATTTTGCGGCCATGCGTGACGCCGTGCTGAAGCTGGGCGGTGACCCCGACCGCATCAATCCCATCTGCCCGTCCGATCTGGTGATCGACCACTCGGTGCAGGTGGACTTTGCGCGCAGCGAGGACGCGCTGGCCAAGAATCAGGATCTGGAGTTCGAGCGCAACAAGGAGCGGTTCACGTTTCTGAAGTGGGGAGCGAAGGCGTTCAACAACATGCTCATCATTCCGCCCGGCTCGGGCATCGTGCACCAGGTCAATCTGGAGTATTTGGCGCGCGTCGTGTTTCAGGACGCGGCGAAGGAGGGCGCAA ] [+] EMBL BM605121 [ cCGCGCAGCGAGGACGCGCTGGCCAAGAATCAGGATCTGGAGTTCGAGCGCAACAAGGAGCGGTTCACGTTTCTGAAGTGGGGAGCGAAGGCGTTCAACAACATGCTCATCATTCCGCCCGGCTCGGGCATCGTGCACCAGGTCAATCTGGAGTATTTGGCGCGCGTCGTGTTTCAGGACGCGGCGAAGGAGGGCGCAACGCGGATGCTGTACCCGGACAGTGTCGTCGGTACGGACTCGCACACCACCATGATCAATGGGCTCGGTGTGGTGGGATGGGGTGTCGGTGGCATCGAGGCCGAGGCGGTTATGCTCGGTCAGGCGATCTCGATGCTGCTGCCGGAGGTGATCGGCTACAAGCTGGTGGGCAAGCTGAACCCGCTCGTCACGTCCACCGATCTTGTGCTGACCATCACGAAGCATCTGCGCCAGATCGGTGTGGGTGGGGAAGTTCGTTGAGTTCTTTGGCCCGGGCGTGAGCGAGCTGTCCATTGCGGATCGGGCCACCATCAGCAACATGTGCCCGGAGTACGGTGCCACGGTCGGTTATTTCCCGGTGGATAAGA] consensusID : consensus_6526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCGTTTCTCCCCTTCCGTTCGCCGTACAACGTCATCAAGTGTCGCGCAGTAGCCTGCAAAGTTCATCCGCCTGGTGTCTGTGTAATTCCGCTGTAATTCCGGATTCGTTCGCAAAAGGCGCAGTAAACAACCGCAGTAAAGATGGCCGGTGCTAATCCATTCCAGAGTTTGCTGAAGGAGATCAACGTCAATGGCGAAACATTCCACTATTTCGACATTGCCTCATTCCCGGAGTATCGCGAACTTCCGTACAGTGTGCGCGTGCTGCTCGAGTCGGCCGTCCGGAACTGCGACAACTTCCAGGTGCTGGAAAAGGACGTGCGGGGCATCCTGCGATGGAAGCAGCTGAAGGGTACGCCGACCTCCGACGACGAGCTGGAGATCCCGTTCAAGCCGGCCCGCGTCATCCTGCAGGACTTTACCGGCGTCCCGGCGGTGGTCGATTTTGCGGCCATGCGTGACGCTGTGCTGAAGCTGGGCGGCGACCCCGACCGCATCA] [+] EMBL BM641838 [CCGCCCACGCGTCCGCCCACGCGTCCGCCGTTTCTCCCCTTCCGTTCGCCGTACAACGTCATCAAGTGTCGCGCAGTAGCCTGCAAAGTTCATCCGCCTGGTGTCTGTGTAATTCCGCTGTAATTCCGGATTCGTTCGCAAAAGGCGCAGTAAACAACCGCAGTAAAGATGGCCGGTGCTAATCCATTCCAGAGTTTGCTGAAGGAGATCAACGTCAATGGCGAAACATTCCACTATTTCGACATTGCCTCATTCCCGGAGTATCGCGAACTTCCGTACAGTGTGCGCGTGCTGCTCGAGTCGGCCGTCCGGAACTGCGACAACTTCCAGGTGCTGGAAAAGGACGTGCGGGGCATCCTGCGATGGAAGCAGCTGAAGGGTACGCCGACCTCCGACGACGAGCTGGAGATCCCGTTCAAGCCGGCCCGCGTCATCCTGCAGGACTTTACCGGCGTCCCGGCGGTGGTCGATTTTGCGGCCATGCGTGACGCTGTGCTGAAGCTGGGCGGCGACCCCGACCGCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6526#0 ------------CCGGTCGCCCATT-ACCGTTTCTCCCCTTCCGTTCGCCGTACAACGTC 47 consensus_6526#1 CCGCCCACGCGTCCGCCCACGCGTCCGCCGTTTCTCCCCTTCCGTTCGCCGTACAACGTC 60 *** * * * * ********************************* consensus_6526#0 ATCAAGTGTCGCGCAGTAGCCTGCAAAGTTCATCCGCCTGGTGTCTGTGTAATTCCGCTG 107 consensus_6526#1 ATCAAGTGTCGCGCAGTAGCCTGCAAAGTTCATCCGCCTGGTGTCTGTGTAATTCCGCTG 120 ************************************************************ consensus_6526#0 TAATTCCGGATTCGTTCGCAAAAGGCGCAGTAAACAACCGCAGTAAAGATGGCCGGTGCT 167 consensus_6526#1 TAATTCCGGATTCGTTCGCAAAAGGCGCAGTAAACAACCGCAGTAAAGATGGCCGGTGCT 180 ************************************************************ consensus_6526#0 AATCCATTCCAGAGTTTGCTGAAGGAGATCAACGTCAATGGCGAAACATTCCACTATTTC 227 consensus_6526#1 AATCCATTCCAGAGTTTGCTGAAGGAGATCAACGTCAATGGCGAAACATTCCACTATTTC 240 ************************************************************ consensus_6526#0 GACATTGCCTCATTCCCGGAGTATCGCGAACTTCCGTACAGTGTGCGCGTGCTGCTCGAG 287 consensus_6526#1 GACATTGCCTCATTCCCGGAGTATCGCGAACTTCCGTACAGTGTGCGCGTGCTGCTCGAG 300 ************************************************************ consensus_6526#0 TCGGCCGTCCGGAACTGCGACAACTTCCAGGTGCTGGAAAAGGACGTGCGGGGCATCCTG 347 consensus_6526#1 TCGGCCGTCCGGAACTGCGACAACTTCCAGGTGCTGGAAAAGGACGTGCGGGGCATCCTG 360 ************************************************************ consensus_6526#0 CGATGGAAGCAGCTGAAGGGTACGCCGACCTCCGACGACGAGCTGGAGATCCCGTTCAAG 407 consensus_6526#1 CGATGGAAGCAGCTGAAGGGTACGCCGACCTCCGACGACGAGCTGGAGATCCCGTTCAAG 420 ************************************************************ consensus_6526#0 CCGGCCCGCGTCATCCTGCAGGACTTTACCGGCGTCCCGGCGGTGGTCGATTTTGCGGCC 467 consensus_6526#1 CCGGCCCGCGTCATCCTGCAGGACTTTACCGGCGTCCCGGCGGTGGTCGATTTTGCGGCC 480 ************************************************************ consensus_6526#0 ATGCGTGACGCCGTGCTGAAGCTGGGCGGCGACCCCGACCGCATCAATCCCATCTGCCCG 527 consensus_6526#1 ATGCGTGACGCTGTGCTGAAGCTGGGCGGCGACCCCGACCGCATCA-------------- 526 *********** ********************************** consensus_6526#0 TCCGATCTGGTGATCGACCACTCGGTGCAGGTGGACTTTGCGCGCAGCGAGGACGCGCTG 587 consensus_6526#1 ------------------------------------------------------------ consensus_6526#0 GCCAAGAATCAGGATCTGGAGTTCGAGCGCAACAAGGAGCGGTTCACGTTTCTGAAGTGG 647 consensus_6526#1 ------------------------------------------------------------ consensus_6526#0 GGAGCGAAGGCGTTCAACAACATGCTCATCATTCCGCCCGGCTCGGGCATCGTGCACCAG 707 consensus_6526#1 ------------------------------------------------------------ consensus_6526#0 GTCAATCTGGAGTATTTGGCGCGCGTCGTGTTTCAGGACGCGGCGAAGGAGGGCGCAACG 767 consensus_6526#1 ------------------------------------------------------------ consensus_6526#0 CGGATGCTGTACCCGGACAGTGTCGTCGGTACGGACTCGCACACCACCATGATCAATGGG 827 consensus_6526#1 ------------------------------------------------------------ consensus_6526#0 CTCGGTGTGGTGGGATGGGGTGTCGGTGGCATCGAGGCCGAGGCGGTTATGCTCGGTCAG 887 consensus_6526#1 ------------------------------------------------------------ consensus_6526#0 GCGATCTCGATGCTGCTGCCGGAGGTGATCGGCTACAAGCTGGTGGGCAAGCTGAACCCG 947 consensus_6526#1 ------------------------------------------------------------ consensus_6526#0 CTCGTCACGTCCACCGATCTTGTGCTGACCATCACGAAGCATCTGCGCCAGATCGGTGTG 1007 consensus_6526#1 ------------------------------------------------------------ consensus_6526#0 GGTGGGGAAGTTCGTTGAGTTCTTTGGCCCGGGCGTGAGCGAGCTGTCCATTGCGGATCG 1067 consensus_6526#1 ------------------------------------------------------------ consensus_6526#0 GGCCACCATCAGCAACATGTGCCCGGAGTACGGTGCCACGGTCGGTTATTTCCCGGTGGA 1127 consensus_6526#1 ------------------------------------------------------------ consensus_6526#0 TAAGA 1132 consensus_6526#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||