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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1006 fasta sequence
[AAAAATTCGTCCAGACACTGAAAACACATTAAGATGTTATCATGTTATGAATTGGATAGCACACAGGCAATTAGATATTGACTGGACCAAATGCAACAACATCCAAACCTCTTTTTCGTTCAACGCTCGAACATCTGTCACTTTACTACAAGCTTACGCAGTTTCTCAACTGAGTAATGAGATATTGTTTAGAACAAACGCAGTATCGTCACTTCATACAATTAATCTACTAACCTTGCGACAGAAAACAAACTTAATTATTGCGTACATCTGTCCCTCTAGTGATGATTTCTTGTTCGGTGAATGGCTTTCGAAGAATGAGTTACATGTACATATAGACGAGTATGTTCGTTTGTTATGCAATTGGTGCCAATGGAACAGCTGCTCAAGAAACTTCATTAAAGCAAAGTCTTGCCTGGCGATAGGAGATACATTTAAAGCACTTGATCTTTTCCCGTTATCTTGGAAAGGAATACATAATGAGCGAATGTTGAAAAAAATCTTGTCCCAAGATGAAAAATTACCTGTTATAACGCCATATGCCTCACTTTCTGCATTTCATTTGAAACTTATTCGTCTTTTTCGAAAATATGGAGCTCATGATGGTGTTCTCAAATTAGTGCATTCTGGAATCGACAATACGCTTCAACCAGTACAGCAGACTATGTTTCAGAGCATTGAATTCAGCTGCCACGTTGATTTGGGACATTATGAAGAAGCCTATAACACTCTAATAAAAAATTGTGAACCAGCACGCAAAAAAGATTGTTTGAGACAATTAGTTTGTCTATTGTTTGCTGTGAGACGTTTGGATATACTTTTAGATTTACC-TTACTATGGATT-GGAAGAAGAATTCACCAGCATT-GTAAGCATGAGTGCTCGTTCTGCAAATATCAGTGATTGCATACAATATGATTTTCCGGGATTCATTTTATATTGAACAAAAAAAATTTACGTA-AAGCGCTATTATATCTTATGAAGAATGCATGAGAAATTGTTTTGAATG]
[+] EMBL BX602561 [AAAAATTCGTCCAGACACTGAAAACACATTAAGATGTTATCATGTTATGAATTGGATAGCACACAGGCAATTAGATATTGACTGGACCAAATGCAACAACATCCAAACCTCTTTTTCGTTCAACGCTCGAACATCTGTCACTTTACTACAAGCTTACGCAGTTTCTCAACTGAGTAATGAGATATTGTTTAGAACAAACGCAGTATCGTCACTTCATACAATTAATCTACTAACCTTGCGACAGAAAACAAACTTAATTATTGCGTACATCTGTCCCTCTAGTGATGATTTCTTGTTCGGTGAATGGCTTTCGAAGAATGAGTTACATGTACATATAGACGAGTATGTTCGTTTGTTATGCAATTGGTGCCAATGGAACAGCTGCTCAAGAAACTTCATTAAAGCAAAGTCTTGCCTGGCGATAGGAGATACATTTAAAGCACTTGATCTTTTCCCGTTATCTTGGAAAGGAATACATAATGAGCGAATGTTGAAAAAAATCTTGTCCCAAGATGAAAAATTACCTGTTATAACGCCATATGCCTCACTTTCTGCATTTCATTTGAAACTTATTCGTCTTTTTCGAAAATATGGAGCTCATGATGGTGTTCTCAAATTAGTGCATTCTGGAATCGACAATACGCTTCAACCAGTACAGCAGACTATGTTTCAGAGCATTGAATTCAGCTGCCACGTTGATTTGGGACATTATGAAGAAGCCTATA ]
[+] EMBL BM602099 [ ccgTACTAACCTTGCGACAGAAAACAAACTTAATTATTGCGTACATCTGTCCCTCTAGTGATGATTTCTTGTTCGGTGAATGGCTTTCGAAGAATGAGTTACATGTACATATAGACGAGTATGTTCGTTTGTTATGCAATTGGTGCCAATGGAACAGCTGCTCAAGAAACTTCATTAAAGCAAAGTCTTGCCTGGCGATAGGAGATACATTTAAAGCACTTGATCTTTTCCCGTTATCTTGGAAAGGAATACATAATGAGCGAATGTTGAAAAAAATCTTGTCCCAAGATGAAAAATTACCTGTTATAACGCCATATGCCTCACTTTCTGCATTTCATTTGAAACTTATTCGTCTTTTTCGAAAATATGGAGCTCATGATGGTGTTCTCAAATTAGTGCATTCTGGAATCGACAATACGCTTCAACCAGTACAGCAGACTATGTTTCAGAGCATTGAATTCAGCTGCCACGTTGATTTGGGACATTATGAAGAAGCCTATAACACTCTAATAAAAAATTGTGAACCAGCACGCAAAAAAGATTGTTTGAGACAATTAGTTTGTCTATTGTTTGCTGTGAGACGTTTGGATATACTTTTAGATTTACCTTTACTATGGATTGGGAAGAAGAATTCACCAGCATTGGTAAGCATGAGTGCTCGTTCTGCAAATATCAGTGATTGCATACAATATGATTTTCCGGGATTCATTTTATAT ]
[+] EMBL BM644052 [ ccgTAATGAGCGAATGTTGAAAAAAATCTTGTCCCAAGATGAAAAATTACCTGTTATAACGCCATATGCCTCACTTTCTGCATTTCATTTGAAACTTATTCGTCTTTTTCGAAAATATGGAGCTCATGATGGTGTTCTCAAATTAGTGCATTCTGGAATCGACAATACGCTTCAACCAGTACAGCAGACTATGTTTCAGAGCATTGAATTCAGCTGCCACGTTGATTTGGGACATTATGAAGAAGCCTATAACACTCTAATAAAAAATTGTGAACCAGCACGCAAAAAAGATTGTTTGAGACAATTAGTTTGTCTATTGTTTGCTGTGAGACGTTTGGATATACTTTTAGATTTACC TTACTATGGATT GGAAGAAGAATTCACCAGCATT GTAGGCATGAGTGCTCGTTCTGCAGATATCAGTGATTGCATACAATATGATTTT CTGTATTCATTTTATA TGAACAAAAAAAATTTACGTAGAAGCGCTATTATATCTTATGAAGAATGCATGAGAAATTGTTTTGAATG]
consensusID : consensus_6528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence
[CAGATCGCGNACGAGTGTCATGTCCTCTAGCTGATGATTCCTTGTTCGGTGAATGGCTTTCGAAGAATGAGTTACATGTACATATAGACGAGTATGTTCGTTATGTTATGCAATTGGTGCCAATGGAACAGCTGCTCAAGAAACTTCATTAAAGCAAAGTCTTGCCTGGCGATAGGAGATACATTTAAAGCACTTGATCTTTTCCCGTTATCTTGGAAAGGAATACATAATGAGCGAATGTTGAAAAAAATCTTGTCCCAAGATGAAAAATTACCGTGTTATAACGCCATATGCCTCACTTTCTGCATTTCATTTGAAAGCTTATTCGTCTTTTTCGAAAATATGGAGCTCATGATGGTGTTCTCAAATTAGTGCATTCTGGAATCGACAATACGCTTCAACCAGTACAGCAGACTATGTTTCAGAGCATTGAATTCAGCTGCCACGTTGATTTGGGACATTATGAAGAAGCCTATAACACTCTATATAAAACAATTGTGAACCAGCACGCAAAAAAGATTGTTTGAGACAATTGGTTTGTCTATTGTTTGCTGTGAGACGTTTGGATATACTTTTAGATTTACCTTACTATGGATTGGAAGAAGAATTCACCAGCATTGTAGGCATGAGTGCTCGTTCTGCAGATATCAGTAATTGCATACAATTATGATTTTCTGGTAATTCCATTTTATTATGAACAAAAAAAAATTTACGTAAAACGCTATTATNATCTTATGAAAGAAATGCCTTAAAAAATTTG]
[+] EMBL BX468060 [CAGATCGCGNACGAGTGTCATGTCCTCTAGCTGATGATTCCTTGTTCGGTGAATGGCTTTCGAAGAATGAGTTACATGTACATATAGACGAGTATGTTCGTTATGTTATGCAATTGGTGCCAATGGAACAGCTGCTCAAGAAACTTCATTAAAGCAAAGTCTTGCCTGGCGATAGGAGATACATTTAAAGCACTTGATCTTTTCCCGTTATCTTGGAAAGGAATACATAATGAGCGAATGTTGAAAAAAATCTTGTCCCAAGATGAAAAATTACCGTGTTATAACGCCATATGCCTCACTTTCTGCATTTCATTTGAAAGCTTATTCGTCTTTTTCGAAAATATGGAGCTCATGATGGTGTTCTCAAATTAGTGCATTCTGGAATCGACAATACGCTTCAACCAGTACAGCAGACTATGTTTCAGAGCATTGAATTCAGCTGCCACGTTGATTTGGGACATTATGAAGAAGCCTATAACACTCTATATAAAACAATTGTGAACCAGCACGCAAAAAAGATTGTTTGAGACAATTGGTTTGTCTATTGTTTGCTGTGAGACGTTTGGATATACTTTTAGATTTACCTTACTATGGATTGGAAGAAGAATTCACCAGCATTGTAGGCATGAGTGCTCGTTCTGCAGATATCAGTAATTGCATACAATTATGATTTTCTGGTAATTCCATTTTATTATGAACAAAAAAAAATTTACGTAAAACGCTATTATNATCTTATGAAAGAAATGCCTTAAAAAATTTG]
consensusID : consensus_6528#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[CCGCGGACGCGTGGGTTCTCGACCAATTGGATTGTTCATTTGCGAAAAAGAACAAAAAAATACATCATTTTTTAATGCTGGAATAATAAGAGAAAAATATGTTAGTTTCTTTCGCATTTGTGACGGCGTAGAGGTTGCGTTTTTTGCGCCAATCATTTATGATCGCTTATGGCCCATCGAAAATGTGCTTAAAGACGAGCACGAAATGATGCTCCTTGTGACATTTTTGAGTGAAGTCGAACAAGCACTTACCATGGATCAAAAAGATAAACTCGACAGTTTCATACATCAACGGCAAGGATGGGAAAACAACGATAATAATTTATCGCTTATAGGAGCAGCTCAACATCAACTTCTAGTGCTTAAATTGTTACCTGGTTTTTTACAACGCATTTCTAATTTGCCAAAAGCAATCGAGAAATTTCTTGAGTACTTACAACCAGTAAATAAAGAACAATATATTTCAGAATGTCAGACAAAATCACATGGATGTACAGTATACGGTAGTAATGAATTATCTAATGAAATAGCATTATCAACAGCAAAACAAACAATACAGTTGCGATATATCCTACTACGTAACCTGTTACTGGTACAACACGTAATGGAACGTCATAGCCATTTCCACTATCATATCATCGATGCAATACAGTCAAAAATTCGTCCAGACACTGAAAACACATTAAGATGTTA]
[+] EMBL BM604780 [CCGCGGACGCGTGGGTTCTCGACCAATTGGATTGTTCATTTGCGAAAAAGAACAAAAAAATACATCATTTTTTAATGCTGGAATAATAAGAGAAAAATATGTTAGTTTCTTTCGCATTTGTGACGGCGTAGAGGTTGCGTTTTTTGCGCCAATCATTTATGATCGCTTATGGCCCATCGAAAATGTGCTTAAAGACGAGCACGAAATGATGCTCCTTGTGACATTTTTGAGTGAAGTCGAACAAGCACTTACCATGGATCAAAAAGATAAACTCGACAGTTTCATACATCAACGGCAAGGATGGGAAAACAACGATAATAATTTATCGCTTATAGGAGCAGCTCAACATCAACTTCTAGTGCTTAAATTGTTACCTGGTTTTTTACAACGCATTTCTAATTTGCCAAAAGCAATCGAGAAATTTCTTGAGTACTTACAACCAGTAAATAAAGAACAATATATTTCAGAATGTCAGACAAAATCACATGGATGTACAGTATACGGTAGTAATGAATTATCTAATGAAATAGCATTATCAACAGCAAAACAAACAATACAGTTGCGATATATCCTACTACGTAACCTGTTACTGGTACAACACGTAATGGAACGTCATAGCCATTTCCACTATCATATCATCGATGCAATACAGTCAAAAATTCGTCCAGACACTGAAAACACATTAAGATGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6528#0 AAAAATTCGTCCAGACACTGAAAACACATTAAGATGTTATCATGTTATGAATTGGATAGC 60
consensus_6528#1 ------------------------------------------------------------
consensus_6528#2 ------------------------------------------------------------
consensus_6528#0 ACACAGGCAATTAGATATTGACTGGACCAAATGCAACAACATCCAAACCTCTTTTTCGTT 120
consensus_6528#1 ------------------------------------------------------------
consensus_6528#2 ------------------------------------------------------------
consensus_6528#0 CAACGCTCGAACATCTGTCACTTTACTACAAGCTTACGCAGTTTCTCAACTGAGTAATGA 180
consensus_6528#1 ------------------------------------------------------------
consensus_6528#2 ------------------------------------------------------------
consensus_6528#0 GATATTGTTTAGAACAAACGCAGTATCGTCACTTCATACAATTAATCTACTAACCTTGCG 240
consensus_6528#1 ------------------------------------------------------------
consensus_6528#2 ------------------------------------------------------------
consensus_6528#0 ACAGAAAACAAACTTAATTAT-TGCGTACATCTGTCCCTCTAG-TGATGATTTCTTGTTC 298
consensus_6528#1 -------------CAGATCGCGNACGAGTGTCATGTCCTCTAGCTGATGATTCCTTGTTC 47
consensus_6528#2 -----------------CCGCGGACGCGTGGGTTCTCGACCAATTG--GATTGTTCATTT 41
** * * * ** **** * **
consensus_6528#0 GGTGAATGGCTTTCGAAGAATGAGTTACATGTACATATAGACGAGTATGTTCGTT-TGTT 357
consensus_6528#1 GGTGAATGGCTTTCGAAGAATGAGTTACATGTACATATAGACGAGTATGTTCGTTATGTT 107
consensus_6528#2 G-CGAAAAAGAACAAAAAAATACATCATTTTTTAATGCTG--GAATAATAAGAGAAAAAT 98
* *** ** *** * * * * ** * ** ** *
consensus_6528#0 ATGCAATTGGTGCCAATGGAACAGCTGCTCAAGAAACTTCATTAAAGCAAAGTCTTGCCT 417
consensus_6528#1 ATGCAATTGGTGCCAATGGAACAGCTGCTCAAGAAACTTCATTAAAGCAAAGTCTTGCCT 167
consensus_6528#2 ATG---TTAGTTTCTTTCG--CATTTGT------GACGGCGTAGAGGTTGCGTTTTTTGC 147
*** ** ** * * * ** ** ** * * * * ** **
consensus_6528#0 GGCGATAGGAGATACATTTAAAGCACTTGATCTTTTCCCGTTAT-CTTGGAAAGGAATAC 476
consensus_6528#1 GGCGATAGGAGATACATTTAAAGCACTTGATCTTTTCCCGTTAT-CTTGGAAAGGAATAC 226
consensus_6528#2 GCCAATCATTTATG-----ATCGCTTATGGCCCATCGAAAATGTGCTTAAAGACGAGCAC 202
* * ** ** * ** ** * * * * *** * * ** **
consensus_6528#0 ATAATGAGCGAATGTTGAAAAAAATCTTGTCCCAAGATGAAAAATTACC-TGTTATAACG 535
consensus_6528#1 ATAATGAGCGAATGTTGAAAAAAATCTTGTCCCAAGATGAAAAATTACCGTGTTATAACG 286
consensus_6528#2 GAAATGA--TGCTCCTTGTGACATTTTTGAGTGAAGTCGAACAAGCACT-TACCATGGAT 259
***** * * * * * *** *** *** ** ** * **
consensus_6528#0 CCATATGCCTCACTTTCTGCATTTCATTTGAAA-CTTATTCGTCTTTTTCGAAAATATGG 594
consensus_6528#1 CCATATGCCTCACTTTCTGCATTTCATTTGAAAGCTTATTCGTCTTTTTCGAAAATATGG 346
consensus_6528#2 CAAAAAGATAAACTCGACA-GTTTCATACATCA------ACGGCAAGGATGGGAAAACAA 312
* * * * *** ****** * ** * * ** *
consensus_6528#0 AGCTCATGATGGTGTTCTCAAATTAGTGCATTCTGGAATCGACAAT--ACGCTTCAACCA 652
consensus_6528#1 AGCTCATGATGGTGTTCTCAAATTAGTGCATTCTGGAATCGACAAT--ACGCTTCAACCA 404
consensus_6528#2 CGATAATAAT--TTATCGCTTATAGGAGCAGCTCAACATCAACTTCTAGTGCTTAAATTG 370
* * ** ** * ** * ** * *** *** ** **** **
consensus_6528#0 GTACAGCAGACTATGTTTCAGAGCATTGAATTCAGCTGCCACGTTGATTTGGGACATTAT 712
consensus_6528#1 GTACAGCAGACTATGTTTCAGAGCATTGAATTCAGCTGCCACGTTGATTTGGGACATTAT 464
consensus_6528#2 TTAC--CTGGTTTT-TTACAACGCATTT--CTAATTTGCCAAAAGCAATCGAGAAATTTC 425
*** * * * * ** ** ***** * * ***** * * * ** ***
consensus_6528#0 GAAGAAGCCTATAACACTCTA-ATAAAA-AATTGTGAACCAGCACGCAAAAAAGATTGTT 770
consensus_6528#1 GAAGAAGCCTATAACACTCTATATAAAACAATTGTGAACCAGCACGCAAAAAAGATTGTT 524
consensus_6528#2 TTGAGTACTTACAAC-CAGTAAATAAA--------GAACAA---TATATTTCAGAATGTC 473
* ** *** * ** ***** **** * * *** ***
consensus_6528#0 TGAGACAATTAGTTTG-TCTATTGTTTGCTGTGAGACGTTTGGATATACTTTTAGATTTA 829
consensus_6528#1 TGAGACAATTGGTTTG-TCTATTGTTTGCTGTGAGACGTTTGGATATACTTTTAGATTTA 583
consensus_6528#2 AGACAAAATCACATGGATGTACAGTATACGGTAGTAA---TGAATTATCTAATGAAATAG 530
** * *** * * * ** ** * * ** * ** ** ** * * *
consensus_6528#0 CCTTACTATGGATTGGAAGAAGAATTCACCAGCATTGTA----AGCATGAGTGCTCGTTC 885
consensus_6528#1 CCTTACTATGGATTGGAAGAAGAATTCACCAGCATTGTA----GGCATGAGTGCTCGTTC 639
consensus_6528#2 CATTATCAACAGCAAAACAAACAATACAGTTGCGATATATCCTACTACGTAACCTGTTAC 590
* *** * * ** *** ** ** * ** * * ** * *
consensus_6528#0 TGCAAATATCAGTGATTGCATACAAT-ATGATTTTCCGGGA--TTCATTTTATATTGAAC 942
consensus_6528#1 TGCAGATATCAGTAATTGCATACAATTATGATTTTCTGGTAATTCCATTTTATTATGAAC 699
consensus_6528#2 TGGTACAACACGTAATGGAACGTCATAGCCATTTCCACTATCATATCATCGATGCAATAC 650
** * ** ** * * ** **** * * * ** **
consensus_6528#0 AAAAAAAA-TTTACGTAAAGCGCTATTATA-TCTTATGAAG--AATGCATGAGAAATTGT 998
consensus_6528#1 AAAAAAAAATTTACGTAAAACGCTATTATNATCTTATGAAAGAAATGCCTTAAAAAATTT 759
consensus_6528#2 AGTCAAAAATTCGTCCAGA-CACTGAAAACACATTAAGATGTTA---------------- 693
* **** ** * * * ** * *** ** *
consensus_6528#0 TTTGAATG 1006
consensus_6528#1 G------- 760
consensus_6528#2 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||