These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 686 fasta sequence [CCGGTACGTACGCTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGTAAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGGTTCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATTATCGAAATGCAGGAGCCTGTGACACT] [+] EMBL BM601478 [CCGGTACGTACGCTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGTAAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGGTTCGGCTA ] [+] EMBL BM579727 [ ccgGTACGCTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGTAAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGC GGGTTCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATTATCGAAATGCAGGAGCCTGTGACACT] [+] EMBL AGA284917 [ CTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGTAAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTA ] [+] EMBL BX601738 [ TATTGTGTTGTAAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATC ] consensusID : consensus_6533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [AGAATCCCCCGAGGTTATTTTATTGTGTTGTAAAGCATCACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGATCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATTATCGAAATGC] [+] EMBL AL694140 [AGAATCCCCCGAGGTTATTTTATTGTGTTGTAAAGCATCACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGATCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATTATCGAAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6533#0 CCGGTACGTACGCTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGT 60 consensus_6533#1 -----------------------------AGAATCCCCCGAGGTTATTTTATTGTGTTGT 31 * * ** *************** consensus_6533#0 AAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGG 120 consensus_6533#1 AAAGCATCA-CATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGG 90 ********* ************************************************** consensus_6533#0 ATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAAT 180 consensus_6533#1 ATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAAT 150 ************************************************************ consensus_6533#0 TGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGAT 240 consensus_6533#1 TGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGAT 210 ************************************************************ consensus_6533#0 TCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCA 300 consensus_6533#1 TCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCA 270 ************************************************************ consensus_6533#0 AGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCG 360 consensus_6533#1 AGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCG 330 ************************************************************ consensus_6533#0 ACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGA 420 consensus_6533#1 ACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGA 390 ************************************************************ consensus_6533#0 AGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTG 480 consensus_6533#1 AGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTG 450 ************************************************************ consensus_6533#0 TTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGT 540 consensus_6533#1 TTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGT 510 ************************************************************ consensus_6533#0 CCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGGT 600 consensus_6533#1 CCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGAT 570 ********************************************************** * consensus_6533#0 TCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATT 660 consensus_6533#1 -CGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATT 629 *********************************************************** consensus_6533#0 ATCGAAATGCAGGAGCCTGTGACACT 686 consensus_6533#1 ATCGAAATGC---------------- 639 ********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||