Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6545 cluster # 6545       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6545#0 length = 1368 sequences # 4  
consensus_6545#1 length = 643 sequences # 1  

consensusID : consensus_6545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1368
fasta sequence
                              [ACAGTTAAAAACACCATACTAACCATAAGTGATTAGAATGAAATTGGATTGTTGTTGTTGTTGATGTTGTTTTTTCCTTGTTTTCC-TTGGCGAGAGATGAAGTATGAACCATGAAACGTGTTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATACACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGCCGGTGATCAAACTCTTGTACATTAACGAATCGGATCATCCGATGTGGTGTCCGCGCGGCGCTTGATAGCGTTGCATAGCGAGCGTGGTGCCCACGGGTGTCCGAGGAGGAATTAAAAAAAAAAAACGACAGTATCTTATTGTGACACAACACACATGTGATTGAAGCGATCGAGGGACAGCTGGCGGGAGAGGGAGGAGCGGCAGTGGTGCCACCCCGACCCTCTCCCCCATAGCAAGCCCTAGTGTTTCACTTTCCTATCACCTTTTTGTAGAATTAACGTTGGACGGTGGCTCTGGTACTGGTTGGGTCGCTTCGTAGGCTTTTGGATTCTTCCAGGGAGGAGAGAGGAAAGAGGAATAAACGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGTTGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAACAAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAATAAGAAATAAACAGAGAAAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTATAAAAAAGAAGAGACAAAACAAAACAACACAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAACAATAGGGGTAGAAAGGGAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAAAACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATTGTGA]

[+] EMBL CNS08EJM             [ACAGTTAAAAACACCATACTAACCATAAGTGATTAGAATGAAATTGGATTGTTGTTGTTGTTGATGTTGTTTTTTCCTTGTTTTCC TTGGCGAGAGATGAAGTATGAACCATGAAACGTGTTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATACACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGCCGGTGATCAAACTCTTGTACATTAACGAATCGGATCATCCGATGTGGTGTCCGCGCGGCGCTTGATAGCGTTGCATAGCGAGCGTGGTGCCCACGGGTGTCCGAGGAGGAATTAAAAAAAAAAAACGACAGTATCTTATTGTGACACAACACACATGTGATTGAAGCGATCGAGGGACAGCTGGCGGGAGAGGGAGGAGCGGCAGTGGTGCCACCCCGACCCTCTCCCCCATAGCAAGCCCTAGTGTTTCACTTTCCTATCACCTTTTTGTAGAATTAACGTTGGACGGTGGCTCTGGTACTGGTTGGGTCGCTTCGTAGGCTTTTGGATTCTTCCAGGGAGGAGAGAGGAAAGAGGAATAAACGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGTTGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAACAAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAATAAGAAATAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CNS08X7R             [                                            TGGATTGTTGTTGTTGTTGATGTTGTTTTTTCCTTGTTTTCCTTTGGCGAGAGATGAAGTATGAACCATGAAACGTGTTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATACACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CNS08EJN             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tagaTTAGTAGGATTTTGGATTCTTAAAGGGAGGAGAGAGGAAAGAGGAATAAACGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGTTGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAAGCAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAATAAGAAATAAACAGAGAAAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTATAAAAAAGAAGAGACAAAACAAAACAACACAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAACAATAGGGGTAGAAAGGGAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAAAACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATTGTGA]
[-] EMBL CNS08X7S             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGGGCGAGCCAAACAATAGGGGTAGAAAGGGAAACAGATTGGAAAAGTAAATCAC TTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCCCCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAG TAATcc   ]


>consensus_6545#0 ACAGTTAAAAACACCATACTAACCATAAGTGATTAGAATGAAATTGGATTGTTGTTGTTG TTGATGTTGTTTTTTCCTTGTTTTCCTTGGCGAGAGATGAAGTATGAACCATGAAACGTG TTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATA CACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGCCGG TGATCAAACTCTTGTACATTAACGAATCGGATCATCCGATGTGGTGTCCGCGCGGCGCTT GATAGCGTTGCATAGCGAGCGTGGTGCCCACGGGTGTCCGAGGAGGAATTAAAAAAAAAA AACGACAGTATCTTATTGTGACACAACACACATGTGATTGAAGCGATCGAGGGACAGCTG GCGGGAGAGGGAGGAGCGGCAGTGGTGCCACCCCGACCCTCTCCCCCATAGCAAGCCCTA GTGTTTCACTTTCCTATCACCTTTTTGTAGAATTAACGTTGGACGGTGGCTCTGGTACTG GTTGGGTCGCTTCGTAGGCTTTTGGATTCTTCCAGGGAGGAGAGAGGAAAGAGGAATAAA CGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGT TGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAACAAAAGATACAC TTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTG CAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACA CAATAAGAAATAAACAGAGAAAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATG TGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCA CTTTTTCCACCGAAACAAATGAATTATAAAAAAGAAGAGACAAAACAAAACAACACAAGA AGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAACAATAGGGGTAGAAAG GGAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATAT ACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGG AAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAAAACACACATA CACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATTGTGA



consensusID : consensus_6545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence
                              [AACTATAGCGCAAGCAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACACTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAAGAAAATAATGAAAAAATAAAGAAATAANCAGAGATAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTAAAAAAAAAGAGACAAAACAAAACAACAAAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAAGAATAGGGGTAGAAAGGAAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATGC]

[-] EMBL BX627691             [AACTATAGCGCAAGCAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACACTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAAGAAAATAATGAAAAAATAAAGAAATAANCAGAGATAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTAAAAAAAAAGAGACAAAACAAAACAACAAAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAAGAATAGGGGTAGAAAGGAAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATGC]


>consensus_6545#1 AACTATAGCGCAAGCAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATA GTATAATAGTGGCTACACACTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAG CGAAGTGAGTGAAAGTGGTAAAACACAAGAAAATAATGAAAAAATAAAGAAATAANCAGA GATAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATG TGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCA CTTTTTCCACCGAAACAAATGAATTAAAAAAAAAGAGACAAAACAAAACAACAAAAGAAG AAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAAGAATAGGGGTAGAAAGGA AAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATAC GTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAA AACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATACA CACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6545#0      ACAGTTAAAAACACCATACTAACCATAAGTGATTAGAATGAAATTGGATTGTTGTTGTTG 60
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      TTGATGTTGTTTTTTCCTTGTTTTCCTTGGCGAGAGATGAAGTATGAACCATGAAACGTG 120
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      TTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATA 180
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      CACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGCCGG 240
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      TGATCAAACTCTTGTACATTAACGAATCGGATCATCCGATGTGGTGTCCGCGCGGCGCTT 300
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      GATAGCGTTGCATAGCGAGCGTGGTGCCCACGGGTGTCCGAGGAGGAATTAAAAAAAAAA 360
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      AACGACAGTATCTTATTGTGACACAACACACATGTGATTGAAGCGATCGAGGGACAGCTG 420
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      GCGGGAGAGGGAGGAGCGGCAGTGGTGCCACCCCGACCCTCTCCCCCATAGCAAGCCCTA 480
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      GTGTTTCACTTTCCTATCACCTTTTTGTAGAATTAACGTTGGACGGTGGCTCTGGTACTG 540
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      GTTGGGTCGCTTCGTAGGCTTTTGGATTCTTCCAGGGAGGAGAGAGGAAAGAGGAATAAA 600
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      CGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGT 660
consensus_6545#1      ------------------------------------------------------------
                                                                                  

consensus_6545#0      TGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAACAAAAGATACAC 720
consensus_6545#1      -----------------------------------AACTATAGCGCAAGCAAAGATACAC 25
                                                         *************  **********

consensus_6545#0      TTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTG 780
consensus_6545#1      TTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACACTCTTG 85
                      ***************************************************** ******

consensus_6545#0      CAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACA 840
consensus_6545#1      CAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACA 145
                      ************************************************************

consensus_6545#0      CAATAAGAAATAAACAGAGAAAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGA 900
consensus_6545#1      CAAGAA------AATAATGAAAAA-------------------ATAAAGAAATAANCAGA 180
                      *** **      ** *  **** *                   * * *** * *   ***

consensus_6545#0      GAGAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATG 960
consensus_6545#1      GATAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATG 240
                      ** *********************************************************

consensus_6545#0      TGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCA 1020
consensus_6545#1      TGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCA 300
                      ************************************************************

consensus_6545#0      CTTTTTCCACCGAAACAAATGAATTATAAAAAAGAAGAGACAAAACAAAACAACACAAGA 1080
consensus_6545#1      CTTTTTCCACCGAAACAAATGAATT--AAAAAAAAAGAGACAAAACAAAACAACAAAAGA 358
                      *************************  ****** ********************* ****

consensus_6545#0      AGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAACAATAGGGGTAGAAAG 1140
consensus_6545#1      AGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAAGAATAGGGGTAGAAAG 418
                      ******************************************** ***************

consensus_6545#0      GGAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATAT 1200
consensus_6545#1      GAAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATAT 478
                      * **********************************************************

consensus_6545#0      ACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGG 1260
consensus_6545#1      ACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGG 538
                      ************************************************************

consensus_6545#0      AAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAAAACACACATA 1320
consensus_6545#1      AAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATA 598
                      ************************************************** *********

consensus_6545#0      CACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATTGTGA 1368
consensus_6545#1      CACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATGC--- 643
                      *******************************************     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)