These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1368 fasta sequence [ACAGTTAAAAACACCATACTAACCATAAGTGATTAGAATGAAATTGGATTGTTGTTGTTGTTGATGTTGTTTTTTCCTTGTTTTCC-TTGGCGAGAGATGAAGTATGAACCATGAAACGTGTTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATACACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGCCGGTGATCAAACTCTTGTACATTAACGAATCGGATCATCCGATGTGGTGTCCGCGCGGCGCTTGATAGCGTTGCATAGCGAGCGTGGTGCCCACGGGTGTCCGAGGAGGAATTAAAAAAAAAAAACGACAGTATCTTATTGTGACACAACACACATGTGATTGAAGCGATCGAGGGACAGCTGGCGGGAGAGGGAGGAGCGGCAGTGGTGCCACCCCGACCCTCTCCCCCATAGCAAGCCCTAGTGTTTCACTTTCCTATCACCTTTTTGTAGAATTAACGTTGGACGGTGGCTCTGGTACTGGTTGGGTCGCTTCGTAGGCTTTTGGATTCTTCCAGGGAGGAGAGAGGAAAGAGGAATAAACGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGTTGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAACAAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAATAAGAAATAAACAGAGAAAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTATAAAAAAGAAGAGACAAAACAAAACAACACAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAACAATAGGGGTAGAAAGGGAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAAAACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATTGTGA] [+] EMBL CNS08EJM [ACAGTTAAAAACACCATACTAACCATAAGTGATTAGAATGAAATTGGATTGTTGTTGTTGTTGATGTTGTTTTTTCCTTGTTTTCC TTGGCGAGAGATGAAGTATGAACCATGAAACGTGTTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATACACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGCCGGTGATCAAACTCTTGTACATTAACGAATCGGATCATCCGATGTGGTGTCCGCGCGGCGCTTGATAGCGTTGCATAGCGAGCGTGGTGCCCACGGGTGTCCGAGGAGGAATTAAAAAAAAAAAACGACAGTATCTTATTGTGACACAACACACATGTGATTGAAGCGATCGAGGGACAGCTGGCGGGAGAGGGAGGAGCGGCAGTGGTGCCACCCCGACCCTCTCCCCCATAGCAAGCCCTAGTGTTTCACTTTCCTATCACCTTTTTGTAGAATTAACGTTGGACGGTGGCTCTGGTACTGGTTGGGTCGCTTCGTAGGCTTTTGGATTCTTCCAGGGAGGAGAGAGGAAAGAGGAATAAACGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGTTGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAACAAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAATAAGAAATAAA ] [+] EMBL CNS08X7R [ TGGATTGTTGTTGTTGTTGATGTTGTTTTTTCCTTGTTTTCCTTTGGCGAGAGATGAAGTATGAACCATGAAACGTGTTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATACACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGC ] [-] EMBL CNS08EJN [ tagaTTAGTAGGATTTTGGATTCTTAAAGGGAGGAGAGAGGAAAGAGGAATAAACGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGTTGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAAGCAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAATAAGAAATAAACAGAGAAAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTATAAAAAAGAAGAGACAAAACAAAACAACACAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAACAATAGGGGTAGAAAGGGAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAAAACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATTGTGA] [-] EMBL CNS08X7S [ TTGGGCGAGCCAAACAATAGGGGTAGAAAGGGAAACAGATTGGAAAAGTAAATCAC TTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCCCCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAG TAATcc ] consensusID : consensus_6545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [AACTATAGCGCAAGCAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACACTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAAGAAAATAATGAAAAAATAAAGAAATAANCAGAGATAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTAAAAAAAAAGAGACAAAACAAAACAACAAAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAAGAATAGGGGTAGAAAGGAAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATGC] [-] EMBL BX627691 [AACTATAGCGCAAGCAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACACTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAAGAAAATAATGAAAAAATAAAGAAATAANCAGAGATAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTAAAAAAAAAGAGACAAAACAAAACAACAAAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAAGAATAGGGGTAGAAAGGAAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6545#0 ACAGTTAAAAACACCATACTAACCATAAGTGATTAGAATGAAATTGGATTGTTGTTGTTG 60 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 TTGATGTTGTTTTTTCCTTGTTTTCCTTGGCGAGAGATGAAGTATGAACCATGAAACGTG 120 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 TTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATA 180 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 CACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGCCGG 240 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 TGATCAAACTCTTGTACATTAACGAATCGGATCATCCGATGTGGTGTCCGCGCGGCGCTT 300 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 GATAGCGTTGCATAGCGAGCGTGGTGCCCACGGGTGTCCGAGGAGGAATTAAAAAAAAAA 360 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 AACGACAGTATCTTATTGTGACACAACACACATGTGATTGAAGCGATCGAGGGACAGCTG 420 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 GCGGGAGAGGGAGGAGCGGCAGTGGTGCCACCCCGACCCTCTCCCCCATAGCAAGCCCTA 480 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 GTGTTTCACTTTCCTATCACCTTTTTGTAGAATTAACGTTGGACGGTGGCTCTGGTACTG 540 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 GTTGGGTCGCTTCGTAGGCTTTTGGATTCTTCCAGGGAGGAGAGAGGAAAGAGGAATAAA 600 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 CGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGT 660 consensus_6545#1 ------------------------------------------------------------ consensus_6545#0 TGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAACAAAAGATACAC 720 consensus_6545#1 -----------------------------------AACTATAGCGCAAGCAAAGATACAC 25 ************* ********** consensus_6545#0 TTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTG 780 consensus_6545#1 TTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACACTCTTG 85 ***************************************************** ****** consensus_6545#0 CAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACA 840 consensus_6545#1 CAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACA 145 ************************************************************ consensus_6545#0 CAATAAGAAATAAACAGAGAAAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGA 900 consensus_6545#1 CAAGAA------AATAATGAAAAA-------------------ATAAAGAAATAANCAGA 180 *** ** ** * **** * * * *** * * *** consensus_6545#0 GAGAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATG 960 consensus_6545#1 GATAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATG 240 ** ********************************************************* consensus_6545#0 TGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCA 1020 consensus_6545#1 TGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCA 300 ************************************************************ consensus_6545#0 CTTTTTCCACCGAAACAAATGAATTATAAAAAAGAAGAGACAAAACAAAACAACACAAGA 1080 consensus_6545#1 CTTTTTCCACCGAAACAAATGAATT--AAAAAAAAAGAGACAAAACAAAACAACAAAAGA 358 ************************* ****** ********************* **** consensus_6545#0 AGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAACAATAGGGGTAGAAAG 1140 consensus_6545#1 AGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAAGAATAGGGGTAGAAAG 418 ******************************************** *************** consensus_6545#0 GGAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATAT 1200 consensus_6545#1 GAAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATAT 478 * ********************************************************** consensus_6545#0 ACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGG 1260 consensus_6545#1 ACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGG 538 ************************************************************ consensus_6545#0 AAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAAAACACACATA 1320 consensus_6545#1 AAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATA 598 ************************************************** ********* consensus_6545#0 CACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATTGTGA 1368 consensus_6545#1 CACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATGC--- 643 ******************************************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||