These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 650 fasta sequence [CCGATAAGAAGTGAAAGTAACTTCCACGATCGAACTATACGCACCGTTCAAACCGGTTTTATAGGTTAAAAAGGCACCGCTGTTGATCGATTTTCTTTTCTCCCCATTACTCTTGCAGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGCCTGTACGTGACGTACTTCGGGGGCCATCCCGAGTCGGGCCTGGAGCCGGATCTGGAGTGTCGCGAGATTTGGCTGAAGCTCGGCGTGAAGGAGGAA] [+] EMBL BM606434 [CCGATAAGAAGTGAAAGTAACTTCCACGATCGAACTATACGCACCGTTCAAACCGGTTTTATAGGTTAAAAAGGCACCGCTGTTGATCGATTTTCTTTTCTCCCCATTACTCTTGCAGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGCCTGTACGTGACGTACTTCGGGGGCCATCCCGAGTCGGGCCTGGAGCCGGATCTGGAGTGTCGCGAGATTTGGCTGAAGCTCGGCGTGAAGGAGGAA] [+] EMBL BM611102 [ GTGAAAGTAACTTCCACGATCGAACTACACGCACCGTTCAAACCGGTTTTATAGGTTAAAAAGGCACCGCTGTTGATCGATTTTCTTTTCTCCCCATTACTCTTGCAGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCA ] [+] EMBL BM599234 [ TATAGGTTAAAAAGGCACCGCTGTTGATCGATTTTCTTTTCTCCCCATTACTCTTGCAGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCC ] consensusID : consensus_6567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAATTTAAAGGTGCCCGAAAGTACTGCATTGGTAGTTTTGCTTCCTCGTCTCTTTGCGGCACCGCATTTTGCATACACACACACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGTCTGTACGTGACGTACTTCGGGGGCCATCCTGAGTCGGGACTGGAGCCGGGATCTGGAGTGTCGCGAGATTTGGCTGAAGCTGGG] [+] EMBL BM594736 [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAATTTAAAGGTGCCCGAAAGTACTGCATTGGTAGTTTTGCTTCCTCGTCTCTTTGCGGCACCGCATTTTGCATACACACACACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGTCTGTACGTGACGTACTTCGGGGGCCATCCTGAGTCGGGACTGGAGCCGGGATCTGGAGTGTCGCGAGATTTGGCTGAAGCTGGG] consensusID : consensus_6567#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [CCGCGGAAAATAAAACGTGGATAAAGAGGCCGATCTTACGGCAAGGAAAGGCTTATCTCTCAGTTCGCATTGCGTAGGGTGCAGATTTTAAGGTGCCCGAAAGTACTGCATTGGTAGTTTTGCTTCCTCGTCCCTTTGCGGCACCGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGC] [+] EMBL BM648838 [CCGCGGAAAATAAAACGTGGATAAAGAGGCCGATCTTACGGCAAGGAAAGGCTTATCTCTCAGTTCGCATTGCGTAGGGTGCAGATTTTAAGGTGCCCGAAAGTACTGCATTGGTAGTTTTGCTTCCTCGTCCCTTTGCGGCACCGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6567#1 ------------------------------------------------CCGCCCACGCGT 12 consensus_6567#2 CCGCGGAAAATAAAACGTGGATAAAGAGGCCGATCTTACGGCAAGGAAAGGCTTATCTCT 60 consensus_6567#0 -----------------------------CCGATAAGAAGTGAAAGTAACTTCCACGATC 31 * consensus_6567#1 CCGCC-CAC---GCGTCCGGT--AAATTTAAAGGTGCCCGAAAGTACTGC-ATTGGTAGT 65 consensus_6567#2 CAGTT-CGCATTGCGTAGGGTGCAGATTTTAAGGTGCCCGAAAGTACTGC-ATTGGTAGT 118 consensus_6567#0 GAACTATACGCACCGTTCAAACCGGTTTTATAGGT-TAAAAAGGCACCGCTGTTGATCGA 90 * *** *** **** ** * ** ** *** * * consensus_6567#1 TTTGCTTCCTCGTCTCTTTGCGGCACCGCATTTTGCATACACACACA--CCCTCTGTGCC 123 consensus_6567#2 TTTGCTTCCTCGTCCCTTTGCGGCACCGCATTTTGCATATACACACAAACCCTCTGTGCC 178 consensus_6567#0 TTTTCTTTTCTCCCCATTACTCTTGCAGCATTTTGCATATACACACAAACCCTCTGTGCC 150 *** *** * ** * ************ ******* *********** consensus_6567#1 TATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCT 183 consensus_6567#2 TATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCT 238 consensus_6567#0 TATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCT 210 ************************************************************ consensus_6567#1 TCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGA 243 consensus_6567#2 TCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGA 298 consensus_6567#0 TCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGA 270 ************************************************************ consensus_6567#1 CGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCG 303 consensus_6567#2 CGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCG 358 consensus_6567#0 CGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCG 330 ************************************************************ consensus_6567#1 ACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTG 363 consensus_6567#2 ACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTG 418 consensus_6567#0 ACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTG 390 ************************************************************ consensus_6567#1 CCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCT 423 consensus_6567#2 CCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCT 478 consensus_6567#0 CCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCT 450 ************************************************************ consensus_6567#1 TCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGG 483 consensus_6567#2 TCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGG 538 consensus_6567#0 TCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGG 510 ************************************************************ consensus_6567#1 CGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGTCTGTACGTGACGTACT 543 consensus_6567#2 CGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGC------------------ 580 consensus_6567#0 CGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGCCTGTACGTGACGTACT 570 ****************************************** consensus_6567#1 TCGGGGGCCATCCTGAGTCGGGACTGGAGCCGGGATCTGGAGTGTCGCGAGATTTGGCTG 603 consensus_6567#2 ------------------------------------------------------------ consensus_6567#0 TCGGGGGCCATCCCGAGTCGGGCCTGGAGCCGG-ATCTGGAGTGTCGCGAGATTTGGCTG 629 consensus_6567#1 AAGCTGGG------------- 611 consensus_6567#2 --------------------- consensus_6567#0 AAGCTCGGCGTGAAGGAGGAA 650 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||