These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1419 fasta sequence [AGGCAAGAATTCCGCACGATGCTCGAGTTGTTTCAAATAACCAAAACAACAAAACCTCACAAAGCAAAAAACCGTATCAAAATTGTACACTCCTCAAACACTATCTCGGAAGCNTTCGGTGCATATTTTATAAATATCCTGAAACATGTTCCAATGCCGCTATATGGTTTCTGGTGACATTCAGGTAGGGGTTAGGACNTTTTTGTNTATACGCGGGGTGAAAAAATGGGTAAACAAAACGACACAACNACCGGCGGTGAACTAAATTTGAAGGTTTAAGGTGGTNACGCGGTGGTTCCCACAACCTTTTTCNCAGACGGAGAAGGCCAAAAACNNGTTCCTTTAAGGTTCCCAGGAAGGAGACAGACGGAAACAAGGAACACTAACCCCAAGAACAGTNGGTTTGACGGAANACGACACACAAGGCCCCCCGCGGGGGGGGCNGGAACGAGCACACCAANGGGGGGCNGGACAAAACGGTGTATACGTTAGGCCNGACAAGCTTGGGGNGNTNATACGAANAGACGCTGTCTCCCACGAAGGGGNAGGGNACGAAAAAGACGGGNCGAAACAACACGGAGAACAACGGTTTGGGGGGAAACCACCCAAGACAGCAACAGGGTGGTGTCAGACAANCCCTCGGTGGAGTATTTTCTCCCGAACAGGGAAGNCAGGAAGACACGGAGACCTTTNTTGTGGGAAAACCGTCAATGATGATCCGCGCTATTCGCNACAGAAGANTTTTGGNGCGCGAGAACAAGGTGTTNTAGCACCGACGCCAAGAANCCACCAGCAAATTGGTNAGAGTTANTGAAACANAATTCGGGGGGTGCGGTCTGCAGGGGTGATTTCCNCCCACAGACACGGGCAGCAAACCGCGGGGGGNCNAACACANTTCTNGGTGAGGTTAATCATGCNTGTGNATTGNCGCGCNCAGCAAACAGGCAGGCAACCAACACAAGGGGAGTATTTTAAAAACAAGACCCGTTCTNCTAAGATAGTTTTATCAAGAAGGCCGTTNTCCCNTCANACAACAGANCGCACGTTCTATGTTGTTAACACCAGCNGTTTTTGTACCAGCCGGACGACAAGCGGNGACGCNTATTTTCACACCAANCNGGGGGGGTGCAACCACCCCGCAGNGANTGGGGGAAGAAAACCCCNCGCGGGCNGTTAGGTTGACGTACAAANGACGGGCGCGCGAACGAGGGTGGCANTTTTANACGCCATGCGGTGGGACCACAACANGGGGCCAGGCAACAGAACCCGGGANAGAACGACGGCAACACAGAGATTGGTGGCGCTCAACAAAAAAACGACCTTTTGGGGNAGGGNCCACCGCGCCACGGGAAGAAGCGATGGGGNACGGAACAGNGCNTCTGCCTGTCNCNGAACACNGCGNGAACAAAGGACGGCCCA] [+] EMBL BX468257 [AGGCAAGAATTCCGCACGATGCTCGAGTTGTTTCAAATAACCAAAACAACAAAACCTCACAAAGCAAAAAACCGTATCAAAATTGTACACTCCTCAAACACTATCTCGGAAGCNTTCGGTGCATATTTTATAAATATCCTGAAACATGTTCCAATGCCGCTATATGGTTTCTGGTGACATTCAGGTAGGGGTTAGGACNTTTTTGTNTATACGCGGGGTGAAAAAATGGGTAAACAAAACGACACAACNACCGGCGGTGAACTAAATTTGAAGGTTTAAGGTGGTNACGCGGTGGTTCCCACAACCTTTTTCNCAGACGGAGAAGGCCAAAAACNNGTTCCTTTAAGGTTCCCAGGAAGGAGACAGACGGAAACAAGGAACACTAACCCCAAGAACAGTNGGTTTGACGGAANACGACACACAAGGCCCCCCGCGGGGGGGGCNGGAACGAGCACACCAANGGGGGGCNGGACAAAACGGTGTATACGTTAGGCCNGACAAGCTTGGGGNGNTNATACGAANAGACGCTGTCTCCCACGAAGGGGNAGGGNACGAAAAAGACGGGNCGAAACAACACGGAGAACAACGGTTTGGGGGGAAACCACCCAAGACAGCAACAGGGTGGTGTCAGACAANCCCTCGGTGGAGTATTTTCTCCCGAACAGGGAAGNCAGGAAGACACGGAGACCTTTNTTGTGGGAAAACCGTCAATGATGATCCGCGCTATTCGCNACAGAAGANTTTTGGNGCGCGAGAACAAGGTGTTNTAGCACCGACGCCAAGAANCCACCAGCAAATTGGTNAGAGTTANTGAAACANAATTCGGGGGGTGCGGTCTGCAGGGGTGATTTCCNCCCACAGACACGGGCAGCAAACCGCGGGGGGNCNAACACANTTCTNGGTGAGGTTAATCATGCNTGTGNATTGNCGCGCNCAGCAAACAGGCAGGCAACCAACACAAGGGGAGTATTTTAAAAACAAGACCCGTTCTNCTAAGATAGTTTTATCAAGAAGGCCGTTNTCCCNTCANACAACAGANCGCACGTTCTATGTTGTTAACACCAGCNGTTTTTGTACCAGCCGGACGACAAGCGGNGACGCNTATTTTCACACCAANCNGGGGGGGTGCAACCACCCCGCAGNGANTGGGGGAAGAAAACCCCNCGCGGGCNGTTAGGTTGACGTACAAANGACGGGCGCGCGAACGAGGGTGGCANTTTTANACGCCATGCGGTGGGACCACAACANGGGGCCAGGCAACAGAACCCGGGANAGAACGACGGCAACACAGAGATTGGTGGCGCTCAACAAAAAAACGACCTTTTGGGGNAGGGNCCACCGCGCCACGGGAAGAAGCGATGGGGNACGGAACAGNGCNTCTGCCTGTCNCNGAACACNGCGNGAACAAAGGACGGCCCA] consensusID : consensus_6572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1179 fasta sequence [CCTCTCGCGAAAGGCACTTCACAACCTTAGTACACTCGCAACTCGCACTGAAACTGTGTTACACAAAGCTCTTTTTTAAGAACGATTTTTTGTTTGTTTGCTATTAGTTTCAATAACTATTTGATGAATTTTTGCACTCAGTTTTGGATGTTTTTTGCCTTTTTTTATCACGTTTTTTAGCCGTTTGTGTGCATACATATAAATATATATATTAAATATGTATACTCTTTTTCTCTCTCTGTCTCGCACGATCGATATTGCGGGACACCGTGTCGGTCGCAGGATGTGTGTCGCATCAATCGTAGACCATTAGGAAGGATTTAGAAAAAAAAATTGCAACACGCAAACAGCTGCCGTGAGCTTGGGTGGGCTTGTTACGCTTGTTTGTTGGAAAAATGCAGTTTAATCGTTTAAACATTTACTAACCAACGCGCTATCGCACACTGCCCGAGGACGACGACGAACAAGCGTTGATGAAGAGAAGAAAATCTCGAGTTTGTTTCCAAATAACAAAACAACAAAACCTCACAAAGCAAAAAACCGTATCAAAATTGTACACTCCTCAAACACTATCTCGGAAGCATTCGGTGCATATTTTATAAATATCCTGCAAACATGTTCAATGCCGCTATTGTTTCTGTGATTTTGTGGTTAGATTTTTTTTCGGGGTGAAAATGGTAAACAAACGACACACAACGCGTGAACTAATTTGAGTTTAGTGTACGGTTGTCAAACTTTCAAAGAAGCAAACATCTAGTCAGAGAAGAGAAAGACAACAAAATGTAAGAAAAAAGCCCGGGGGAGAGAAAGGGAGAAAGTAAGTAGCAGAAGTGATAAAACTCAAAGAGAAAACGAACAGAAAGTGGAACAAAAAAGTAAAACTGTATTCAAAGAAGAAGACTAGAACTATTTCATACAAATTGCAAAGTCACCCACCAATGATGATTGTGTGGTTCAAAGAAGGAAATGATAGTTAGAAGAAAAGATAAAACTAATTAAACTCAAACATATGAGTGAGAAGATAAAAGGAACGAGGAACGATGAAAGCGAGTATAATGAAAAGCAAACGAAACAAATGCAAAACTGTTCACAGAATGAAACTCTCAAAGAAGCAGGCAAGAGTAAAACAAAACAAAAACAAACGTTTCTATTCTAGAAACTCAAAACAAGTGAACATAC] [+] EMBL BX621823 [CCTCTCGCGAAAGGCACTTCACAACCTTAGTACACTCGCAACTCGCACTGAAACTGTGTTACACAAAGCTCTTTTTTAAGAACGATTTTTTGTTTGTTTGCTATTAGTTTCAATAACTATTTGATGAATTTTTGCACTCAGTTTTGGATGTTTTTTGCCTTTTTTTATCACGTTTTTTAGCCGTTTGTGTGCATACATATAAATATATATATTAAATATGTATACTCTTTTTCTCTCTCTGTCTCGCACGATCGATATTGCGGGACACCGTGTCGGTCGCAGGATGTGTGTCGCATCAATCGTAGACCATTAGGAAGGATTTAGAAAAAAAAATTGCAACACGCAAACAGCTGCCGTGAGCTTGGGTGGGCTTGTTACGCTTGTTTGTTGGAAAAATGCAGTTTAATCGTTTAAACATTTACTAACCAACGCGCTATCGCACACTGCCCGAGGACGACGACGAACAAGCGTTGATGAAGAGAAGAAAATCTCGAGTTTGTTTCCAAATAACAAAACAACAAAACCTCACAAAGCAAAAAACCGTATCAAAATTGTACACTCCTCAAACACTATCTCGTAAGCATTCGGTGCATATTTTATAAATATCCTGCAAACATGTTCAATGCCGCTATTGTTTCTGTGATTTTGTGGTTAGATTTTTTTTCGGGGTGAAAATGGTAAACAAACGACACACAACGCGTGAACTAATTTGAGTTTAGTGTACGGTTGTCAAACTTTCAAAGAAGCAAACATCTAGTCAGAGAAGAG AAGACca ] [+] EMBL BM651774 [ ccgCGTTTAAACATTTACTAACCAACGCGCTATCGCACACTGCCCGAGGACGACGACGAACAAGCGTTGATGAAGAGAAGAAAATCTCGAGTTTGTTTCCAAATAACAAAACAACAAAACCTCACAAAGCAAAAAACCGTATCAAAATTGTACACTCCTCAAACACTATCTCGGAAGCATTCGGTGCATATTTTATAAATATCCTGCAAACATGTTCAATGCCGCTATTGTTTCTGTGATTTTGTGGTTAGATTTTTTTTCGGGGTGAAAATGGTAAACAAACGACACACAACGCGTGAACTAATTTGAGTTTAGTGTACGGTTGTCAAACTTTCAAAGAAGCAAACATCTAGTCAGAGAAGAGAAAGACAACAAAATGTAAGAAAAAAGCCCGGGGGAGAGAAAGGGAGAAAGTAAGTAGCAGAAGTGATAAAACTCAAAGAGAAAACGAACAGAAAGTGGAACAAAAAAGTAAAACTGTATTCAAAGAAGAAGACTAGAACTATTTCATACAAATTGCAAAGTCACCCACCAATGATGATTGTGTGGTTCAAAGAAGGAAATGATAGTTAGAAGAAAAGATAAAACTAATTAAACTCAAACATATGAGTGAGAAGATAAAAGGAACGAGGAACGATGAAAGCGAGTATAATGAAAAGCAAACGAAACAAATGCAAAAC ] [+] EMBL BX618850 [ ACGACGACGAACAAGCGTTGACGAAGAGAAGAAAATCTCGAGTTTGTTTCCAAATAACAAAACAACAAAACCTCACAAAGCAAAAAACCGTATCAAAATTGTACACTCCTCAAACACTATCTCGGAAGCATTCGGTGCATATTTTATAAATATCCTGCAAACATGTTCAATGCCGCTATTGTTTCTGTGATTTTGTGGTTAGATTTTTTTTCGGGGTGAAAATGGTAAACAAACGACACACAACTCGTGAACTAATTTGAGTTTAGTGTACGGTTGTCAAACTTTCAAAGAAGCAGACATCTAGTCAGAGAAGAGAAAGACAAC ] [+] EMBL BX611265 [ TTATAAATATCCTGCAAACATGTTCAATGCCGCTATTGTTTCTGTGATTTTGTGGTTAGATTTTTTTTCGGGGTGAAAATGGTAAACAAACGACACACAACGCGTGAACTAATTTGAGTTTAGTGTACGGTTGTCAAACTTTCAAAGAAGCAAACATCTAGTCAGAGAAGAGAAAGACAACAAAATGTAAGAAAAAAGCCCGGGGGAGAGAAAGGGAGAAAGTAAGTAGCAGAAGTGATAAAACTCAAAGAGAAAACGAACAGAAAGTGGAACAAAAAAGTAAAACTGTATTCAAAGAAGAAGACTAGAACTATTTCATACAAATTGCAAAGTCACCCACCAATGATGATTGTGTGGTTCAAAGAAGGAAATGATAGTTAGAAGAAAAGATAAAACTAATTAAACCCAAACATATGAGTGAGAAGATAAAAGGAACGAGGAACGATGAAAGCGAGTATAATGAAAAGCAAACGAAACAAATGCAAAACTGTTCACAGAATGAAACTCTCAAAGAAGCAGGCAAGAGTAAAACAAAACAAAAACAAACGTTTCTATTCTAGAAACTCAAAACAAGTGAACATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6572#0 AGGCAAGAATTCCGCACGATGCTCGAGTTGTTTCAAATAACCAAAACAACAAAACCTCAC 60 consensus_6572#1 ------------------------------CCTCTCGCGAAAGGCACTTCACAACCTTAG 30 ** * ** ** ***** * consensus_6572#0 AAAGCAAAAAAC-CGTATCAAAATTGTACACTCCTCAAACACTATCTCGGAAGCNTTCGG 119 consensus_6572#1 TACACTCGCAACTCGCACTGAAACTGTGT-TACACAAAGCTCTTTTTTAAGAACG----- 84 * * *** ** * *** *** * ** * ** * * * * consensus_6572#0 TGCATATTTTATAAATATCCTGAAACATGTTCCAATGCCGCTATATGGTTTCTGGTGACA 179 consensus_6572#1 ---ATTTTTTGTTTGTTTGCT---ATTAGTTTCAATA--ACTATTTGATGAATTTTTGCA 136 ** **** * * * ** * *** **** **** ** * * * ** consensus_6572#0 TTCAGGTAGGGGTTAGGACNTTTTTGTNTATACGCGGGGTGAAAAAATGGGTAAACAAAA 239 consensus_6572#1 CTCAGTT-----TTGGATGTTTTTTGCCTTTTT------TTATCACGTTTTTTAGC---- 181 **** * ** * ****** * * * * * * * * * consensus_6572#0 CGACACAACNACCGGCGGTGAACTAAATTTGAAGGTTTAAGGTGGTNACGCGGTGGTTCC 299 consensus_6572#1 -----CGTTTGTGTGCATACATATAAATATATATATTAAATATGTATAC----TCTTTTT 232 * ** * ***** * * ** ** ** ** * ** consensus_6572#0 CACAACCTTTTTCNCA-GACGGAGAAGGCCAAAAACNNGTTCCTTTAAGGTTCCCAGGAA 358 consensus_6572#1 CTCTCTCTGTCTCGCACGATCGATATTGCGGGACACCGTGTC-------GGTCGCAGGAT 285 * * ** * ** ** ** ** * ** * ** ** * ** ***** consensus_6572#0 GGAGACAGACGGAAACAAGGAACACTAACCCCAAGAACAGTNGGTTTGACGGAANACGAC 418 consensus_6572#1 GTGTGTCGCATCAATCGTAGACCATTAG-----GAAGGATTTAGAAAAAAAAATTGCAAC 340 * * ** * ** ** ** * * * * * * * ** consensus_6572#0 ACACAAG-GCCCCCCGCGGGGGGGGCNGGAACGAGCACACCAANGGGGGGCNGGACAAAA 477 consensus_6572#1 ACGCAAACAGCTGCCGTGAGCTTGGGTGGGCTTGTTACGCT--TGTTTGTTGGAAAAATG 398 ** *** * *** * * ** ** ** * * * * * ** consensus_6572#0 CGGTGTATACGTTAGGCCNGACAAGCTTGGGGNGNTNATACGAANAGACGCTGTCTCCCA 537 consensus_6572#1 CAGTTTAATCGTT-----TAAACATTTACTAACCAACGCGCTATCGCACACTGCCC---- 449 * ** ** **** * * * * * ** *** * consensus_6572#0 CGAAGGGGNAGGGNACGAAAAAGACGGGNCGAAACAACACGGAGAACAACGGTTTGGGGG 597 consensus_6572#1 ----GAGGACGACGACGAACAAGCGTTGATGAA--GAGAAGAAAATCTCGAGTTTGTTTC 503 * ** * ***** *** * *** * * * * * * ***** consensus_6572#0 GAAACCACCCAAGACAGCAACAGGGTGGTGTCAGACAANCCCTCGGTGGAGTATTTTCTC 657 consensus_6572#1 CAAATAAC--AAAACAACAAAACCTCACAAAGCAAAAAACCGTATCAAAATTGTACACTC 561 *** ** ** *** *** * * ** ** * * * * *** consensus_6572#0 CCGAACAGGGAAGNCAGGAAGACACGGAGACCTTTNTTGTGGGAAAACCGTCAATGATGA 717 consensus_6572#1 CTCAAACACTATCTCGGAAGCATTCGGTG-CATATTTTATAA-ATATCCTGCAAACATGT 619 * ** * * * * * *** * * * * ** * * * ** *** *** consensus_6572#0 TCCGCGCTATTCGCNACAGAAGANTTTTGGNGCGCGAGAACAAGGTGTTNTAGCACCGAC 777 consensus_6572#1 TCAATGCCGCTATTGTTTCTGTGATTTTGTGGTTAGATTTT---TTTTCGGGGTGAAAAT 676 ** ** * ***** * ** * * * * consensus_6572#0 GCCAAGAANCCACCAGCAAATTGGTNAGAGTTANTGAAACANAATTCGGGGGGTGCGGTC 837 consensus_6572#1 GGTAAACAAACGACA-CACAACGCGTGAACTAATTTGAGTTTAGTGTACGGTTGTCAAAC 735 * ** * * ** ** * * * * * * * * * ** * * consensus_6572#0 TGCAGGGGTGATTTCCNCCCACAGACACGGGCAGCAAACCGCGGGGGGNCNAACACANTT 897 consensus_6572#1 TTTCAAAGAAGCAAACATCTAGTCAGAGAAGAGAAAGACAACAAAATGTAAGAAAAAAGC 795 * * * * * * * * * ** * * * * * consensus_6572#0 CTNGGTGAGGTTAATCATGCNTGTGNATTGNCGCGCNCAGCAAACAGGCAGGCAACCAAC 957 consensus_6572#1 CCGGGGGAGAGAAAGGGAGAAAGTAAGTAGCAGAAGTGATAAAACTCAAAGAGAA--AAC 853 * ** *** ** * ** * * * * **** ** ** *** consensus_6572#0 ACAAGGGGAGTATTTTAAAAACAAGACCCGTTCTNCTAAGATAGTTTTATCAAGAAGGCC 1017 consensus_6572#1 GAACAGAAAGTGGAACAAAAAAGTAAAACTGTATTCAAAG-----------AAGAAGACT 902 * * *** ***** * * * * * *** ****** * consensus_6572#0 GTTNTCCCNTCANACAACAGANCGCACGTTCTATGTTGTTAACACCAGCNGTTTTTGTAC 1077 consensus_6572#1 AGAACTATTTCATACAA---ATTGCA------AAGTCACC--CACCAATGATGATTGTGT 951 *** **** * *** * ** ***** * **** consensus_6572#0 CAGCCGGACGACAAGCGGNGACGCNTATTTTCACACCAANCNGGGGGGGTGCAACCACCC 1137 consensus_6572#1 GGTTCAAAGAAGGAAATGATAGTTAGAAGAAAAGATAAAACTAATTAAACTCAAACAT-- 1009 * * * * * * * * * ** * *** ** consensus_6572#0 CGCAGNGANTGGGGGAAGAAAACCCCNCGCGGGCNGTTAGGTTGACGTACAAANGACGGG 1197 consensus_6572#1 ----ATGAGTGAGAAGATAAAAGGAACGAGGAACGATGAAAGCGA-GTATAA-TGAAAAG 1063 ** ** * * **** * * * * ** *** ** ** * consensus_6572#0 CGCGCGAA-CGAGGGTGGCANTTTTANACGCCATGCGGTGGGACCACAACANGGGGCCAG 1256 consensus_6572#1 CAAACGAAACAAATGCAAAACTGTT------CACAGAATGAAACTCT--CAAAGAAGCAG 1115 * **** * * * * * ** ** ** ** ** * *** consensus_6572#0 GCAACAGAACCCGGGANAGAACGACGGCAA-CACAGAGATTGGTGGCGCTCAACAAAAAA 1315 consensus_6572#1 GCAAGAG----TAAAACAAAACAAAAACAAACGTTTCTATTCTAGAAACTCA--AAACAA 1169 **** ** * * *** * *** * *** * **** *** ** consensus_6572#0 ACGACCTTTTGGGGNAGGGNCCACCGCGCCACGGGAAGAAGCGATGGGGNACGGAACAGN 1375 consensus_6572#1 GTGAACATAC-------------------------------------------------- 1179 ** * * consensus_6572#0 GCNTCTGCCTGTCNCNGAACACNGCGNGAACAAAGGACGGCCCA 1419 consensus_6572#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||