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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 761 fasta sequence
[CCGCCCACGCGTCCGAATGGCCACGATCGTCGAAAGCGATCCCATCTTTACCTTGGACGTTCCCGATAACATCTCGTTGGAGCAAGCGGCCACTATTCCTACGGTGTACACTACTGTGTACGCCTCATTCTTCGTTTGTGCACAAATTCGCAAAGGAAACTCTATTCTCATACACGCTGGTACGGGAGGTGTTGGTTTGGCCG-CCATTCGT---GTTTGTCTAGCTTACGGACTGGAGGTCTTCACTACCGTCAGTACCAAGGAGAAGCGTGACTTCCTGCTGAGCTACTTCCCCGACCTTAACCCCAACAACATCGGAAACTCCAGAGACATCTCCTTCGAAACGCTCATCAAAGAGCGTACCAATGGACGCGGCGTCGACTTTGTCCTCAACTCTTTGTCCGAGGAAAAGCTGCAAGCTTCTATCCGTTGTCTAGCCAGAGGAGGACACTTCCTCGAGATTGGAAAGTATGACATGATGAAGGACTCCAAGATAGCAATGACGTTCTTCCAGAGAGGAATCACTTTCACCGCTGTGCTGGTTGATCTACTGTTCCAAGAAAAACGCGATCTCTTGTTGGAATTACACAAGCTCATCATGAAGGATCTGGCGAAGGGTATCATACAACCGCTACCTACTACCGTCTTCCAGGCTCATGAGATCGAGCAAGCATTCCGTTATCTTGCGACGGCCAAGCATATTGGAAAGGTTGTCCTGAACATTCAGGATAACGAAGATGATCTTGCATCTGATCCGATATCTT]
[+] EMBL BM597387 [CCGCCCACGCGTCCGAATGGCCACGATCGTCGAAAGCGATCCCATCTTTACCTTGGACGTTCCCGATAACATCTCGTTGGAGCAAGCGGCCACTATTCCTACGGTGTACACTACTGTGTACGCCTCATTCTTCGTTTGTGCACAAATTCGCAAAGGAAACTCTATTCTCATACACGCTGGTACGGGAGGTGTTGGTTTGGCCG CCATTCGT GTTTGTCTAGCTTACGGACTGGAGGTCTTCACTACCGTCAGTACCAAGGAGAAGCGTGACTTCCTGCTGAGCTACTTCCCCGACCTTAACCCCAACAACATCGGAAACTCCAGAGACATCTCCTTCGAAACGCTCATCAAAGAGCGTACCAATGGACGCGGTGTCGACTTTGTCCTCAACTCTTTGTCCGAGGAAAAGCTGCAAGCTTCTATCCGTTGTCTAGCCAGAGGAGGACACTTCCTCGAGATTGGAAAGTATGACATGATGAAGGACTCCAAGATAGCAATGACGTTCTTCCAGAGAGGAATCACTTTCACCGCTGTGCTGGTTGATCTACTGTTCCAAGAAAAACGCGATCTCTTGTTGGAATTACACAAGCTCATCATGAAGGATCTGGCGAAGGGTATCATACAACCGCTACCTACTACCGTCTTCCAGGCTCATGAGATCGAG ]
[+] EMBL BM647033 [ CCGCCCACGCGTCCGGTTTGTCTAGCTTACGGACTGGAGGTCTTCACTACCGTCAGTACCAAGGAGAAGCGTGACTTCCTGCTGAGCTACTTCCCCGACCTTAACCCCAACAACATCGGAAACTCCAGAGACATCTCCTTCGAAACGCTCATCAAAGAGCGTACCGATGGACGCGGCGTCGACTTTGTCCTCAACTCTTTGTCCGAGGAAAAGCTGCAAGCTTCTATCCGATGTCTAGCCTGAGGAGGACACTTCCTCGAGATTGGAAAGTATGACATGATGAAGGACTCCAAGATAGCAATGACGTTCTTCCATAGAGGAATCACTTTCACCGCTGTGCTGGTTGATCTACTGTTCCAAGAAAAACGCGATCTCTTGTTGGAATTACACAAGCTCATCATGAAGGATCTGGCGAAGGGGATCATACAACCGCTACCTACTACCGTCTTCCAGGCTCATGAGATCCAGCAAGCATTCCGTTATCTTGCGACGGCCAAGCATATTGGAAAGGTTGTCCTGAACATTCAGGATAACGAAGATGATCTTGCATCTGATCCGATATCTT]
[+] EMBL BM623614 [ ccgGACATCTCCTTCGAAACGCTCATCAAAGAGCGTACCAATGGACGCGGGGTCGACTTTGTCCTCAACTCTTTGTCCGAGGAAGGGCTGGAAGCTTCTATCCGTTGTCTGGCCAGAGGAGGACACTTCCTCGAAATTGGAAAGTATGACATGATGAAGGACTCCAAACTAGCAATGACGTTCTTCCAGAGAGGAATCACTTTCTCTGCTGTGCTGGTTGATCTACTGTTCCAAGAAAAACGCGATCTCTTGT ]
consensusID : consensus_6583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[GACCCACGCGTCCGCGGACGCGTGGGCAAGCCTGGTGATCTTTCTTCATTTACATGGATGGTTGGTCCACTGAACGAGCAGTCGCCCTCTAGTCCGCTGGCCAGAGTTGTGTACAGTTCTTTGAACTTCAAAGACGTTATGCTTGCTACCGGCAGGCTTACAGTGGAGACTTCTTTCACTAACAGATTGCAACAAGAGTGCGTGCTCGGTTTTGAATATTCTGGAGTCACCACCACCGGTAAGCGGGTCATGGGCATGATACCTGCTGGATCGATGGCCACGATGATTGAAACTGATCGACATTTCACACTGGACGTTCCCGATCACATTTCTTTGGAACAAGCGGCCACTATTCCCACAGTCTATGCTACGGTGTACGCCTCATTCTTCATTTGCTCTCACATCCGTAAGGGAAACTCTATTCTCATACACGCTGGTACGGGAGGTGTTGGTTTGGCCGCCATTCGTGTTTGTCTAGCTTACGGACTGGAGGTCTTCACTACCGTCAGTACCAAGGAGAAGCGTGACTTCCTGCTGAGCTACTTCCCCGACCTTAACCCCAACAATATCGGAAACTCCAGAGACATCTCCTTTGAAACGCTCATCAAAGAGCGTACCAATGGACGCGGTGTCGACTTTGTCCTCAACTC]
[+] EMBL BM639876 [GACCCACGCGTCCGCGGACGCGTGGGCAAGCCTGGTGATCTTTCTTCATTTACATGGATGGTTGGTCCACTGAACGAGCAGTCGCCCTCTAGTCCGCTGGCCAGAGTTGTGTACAGTTCTTTGAACTTCAAAGACGTTATGCTTGCTACCGGCAGGCTTACAGTGGAGACTTCTTTCACTAACAGATTGCAACAAGAGTGCGTGCTCGGTTTTGAATATTCTGGAGTCACCACCACCGGTAAGCGGGTCATGGGCATGATACCTGCTGGATCGATGGCCACGATGATTGAAACTGATCGACATTTCACACTGGACGTTCCCGATCACATTTCTTTGGAACAAGCGGCCACTATTCCCACAGTCTATGCTACGGTGTACGCCTCATTCTTCATTTGCTCTCACATCCGTAAGGGAAACTCTATTCTCATACACGCTGGTACGGGAGGTGTTGGTTTGGCCGCCATTCGTGTTTGTCTAGCTTACGGACTGGAGGTCTTCACTACCGTCAGTACCAAGGAGAAGCGTGACTTCCTGCTGAGCTACTTCCCCGACCTTAACCCCAACAATATCGGAAACTCCAGAGACATCTCCTTTGAAACGCTCATCAAAGAGCGTACCAATGGACGCGGTGTCGACTTTGTCCTCAACTC]
consensusID : consensus_6583#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence
[ATTCGAAAAGAGCCCAACATTCAAACCGTTTCCTGTTTCTTCATTGATGATCCCAGCGCTCCTACGTTCGATGCTTCCAACCCGTTCTACAAAGAACAGATTGAGCTTGGACTTGCGATCAACGTTTATCGCGAAGGCCAATGGGGATCCTATCGTCATTTCAAGCTGCAAGAAGAGCCTCGTTACGAGCCCGCTACCAAACATTGTTTCGCCAATTGTGTCAAGCCTGGTGATCTTTCTTCATTCACATGGATGGTTGGTCCACTGAGCGAACAGCCGCCCTCCAGTCCGCTGGCCAGAGTTGTCTACAGCTCACTGAACTTCAAAGACGTTATGATTGCTACCGGCAGGCTTACGGTTGAAACATTCTGCACTGATCGACTGCAACAAGAGTGCATTCTTGGGTTTGAGTATTCTGGAGTCACCACCACCGGTAAGCGGGTCATGGGAATTATTGGAGCCGGATCAATGGCCACGATCGTCGAAAGCGATCCCATCTTTACCTTGGACGTTCCCGATAACATCTCGTTGGAGCAAGCGGCCACTATTCCTACGGTGTACACTACTGTGTACGCCTCATTCTTCGTTTGTGCACAAATTCGCAAAGGAAACTCTATTCTCATACACGCTG]
[+] EMBL BM628451 [ATTCGAAAAGAGCCCAACATTCAAACCGTTTCCTGTTTCTTCATTGATGATCCCAGCGCTCCTACGTTCGATGCTTCCAACCCGTTCTACAAAGAACAGATTGAGCTTGGACTTGCGATCAACGTTTATCGCGAAGGCCAATGGGGATCCTATCGTCATTTCAAGCTGCAAGAAGAGCCTCGTTACGAGCCCGCTACCAAACATTGTTTCGCCAATTGTGTCAAGCCTGGTGATCTTTCTTCATTCACATGGATGGTTGGTCCACTGAGCGAACAGCCGCCCTCCAGTCCGCTGGCCAGAGTTGTCTACAGCTCACTGAACTTCAAAGACGTTATGATTGCTACCGGCAGGCTTACGGTTGAAACATTCTGCACTGATCGACTGCAACAAGAGTGCATTCTTGGGTTTGAGTATTCTGGAGTCACCACCACCGGTAAGCGGGTCATGGGAATTATTGGAGCCGGATCAATGGCCACGATCGTCGAAAGCGATCCCATCTTTACCTTGGACGTTCCCGATAACATCTCGTTGGAGCAAGCGGCCACTATTCCTACGGTGTACACTACTGTGTACGCCTCATTCTTCGTTTGTGCACAAATTCGCAAAGGAAACTCTATTCTCATACACGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6583#1 ------------------------------------------------------------
consensus_6583#2 ----------ATTCGAAAAGAGCCCAACATTCAAACCGTTTCCTGTTTCTTCATTGATGA 50
consensus_6583#0 CCGCCCACGCGTCCGAATGGCCACGATCGTCGAAAGCGATCCCATCTTTACCTTGGACGT 60
consensus_6583#1 ------------------------------------------------------------
consensus_6583#2 TCCCAGCGCTCCTACGTTCGATGCTTCCAACCCGTTCTACAAAGAACAGATTGAGCTTGG 110
consensus_6583#0 TCCCGATAACATCTCGTTGGAGCAAGCGGCCACTATTCCTACGGTGTACACTACTGTGTA 120
consensus_6583#1 ------------------------------------------------------------
consensus_6583#2 ACTTGCGATCAACGTTTAT-CGCGAAGGC-CAATGGGGATCCTATCGTCATTTCAAGCTG 168
consensus_6583#0 CGCCTCATTCTTCGTTTGTGCACAAATTCGCAAAGGAAACTCTATTCTCATACACGCTGG 180
consensus_6583#1 ------------------------------GACCCACGCGTCCGCGGACGCGTGGGCAAG 30
consensus_6583#2 CAAGAAGAGCCTCGTTACGAGCCCGCTACCAAACATTGTTTCGCCAATTGTGT---CAAG 225
consensus_6583#0 TACGGGAGGTGTTGGTTTGG--CCGCCATTCGTGTTTGTCTAGCTTACGGACT--GGAGG 236
* * * * * *
consensus_6583#1 CCTGGTGATCTTTCTTCATTTACATGGATGGTTGGTCC--ACTGAACGAGCAGTCGCCCT 88
consensus_6583#2 CCTGGTGATCTTTCTTCATTCACATGGATGGTTGGTCC--ACTGAGCGAACAGCCGCCCT 283
consensus_6583#0 TCTTCACTACCGTCAGTACCAAGGAGAAGCGTGACTTCCTGCTGAGCTACTTCCCCGACC 296
** * ** * * * * ** * * **** * * * *
consensus_6583#1 CTAGTCCGCTGGCCAGAGTTGTGTACAGTTCTTTGAACTTCAAAGACGTTATGCTTGC-- 146
consensus_6583#2 CCAGTCCGCTGGCCAGAGTTGTCTACAGCTCACTGAACTTCAAAGACGTTATGATTGC-- 341
consensus_6583#0 TTAACCCCAACAACATCGGAAACTCCAGAGACATCTCCTTCGAAACGCTCATCAAAGAGC 356
* ** ** * * *** * **** ** * ** *
consensus_6583#1 -TACCGGCAGGCTTACAGTGGAGAC-TTCTTTCACTAACAGATTGCAACAAGAGTGCGTG 204
consensus_6583#2 -TACCGGCAGGCTTACGGTTGAAAC-ATTCTGCACTGATCGACTGCAACAAGAGTGCATT 399
consensus_6583#0 GTACCAATGGACGCGGCGTCGACTTTGTCCTCAACTCTTTGTCCGAGGAAAAGCTGCAAG 416
**** * * ** ** * * *** * * ** ***
consensus_6583#1 CTCGGTT---TTGAATATTCTGGAGTCACCACCACCG-GTAAGCGGGTCATGGGC-ATGA 259
consensus_6583#2 CTTGGGT---TTGAGTATTCTGGAGTCACCACCACCG-GTAAGCGGGTCATGGGA-ATTA 454
consensus_6583#0 CTTCTATCCGTTGTCTAGCCAGAGGAGGACACTTCCTCGAGATTGGAAAGTATGACATGA 476
** * *** ** * * * *** ** * * ** * * ** *
consensus_6583#1 TACCTG---CTGGATCGATGGCCACGATGATTGAAACTGATCGACATTTCACACTGGACG 316
consensus_6583#2 TTGGAG---CCGGATCAATGGCCACGATCGTCGAAAGCGATCCCATCTTTACCTTGGACG 511
consensus_6583#0 TGAAGGACTCCAAGATAGCAATGACGTTCTTCCAGAGAGGAATCACTTTCACCGCTGTGC 536
* * * *** * * * * * ** ** *
consensus_6583#1 TTCCCGATC-ACATTTCTTTGGAACAAGCGGCCACT-ATTCCCACAGTCTATGCTACGGT 374
consensus_6583#2 TTCCCGATA-ACATCTCGTTGGAGCAAGCGGCCACT-ATTCCTACGGTGTACACTACTGT 569
consensus_6583#0 TGGTTGATCTACTGTTCCAAGAAAAACGCGATCTCTTGTTGGAATTACACAAGCTCATCA 596
* *** ** ** * * * *** * ** ** * * **
consensus_6583#1 GTACGCCTCATTCTTCATTTGCTCTCACATCCGTAAGGGAAACTCTATTCTCATACACGC 434
consensus_6583#2 GTACGCCTCATTCTTCGTTTGTGCACAAATTCGCAAAGGAAACTCTATTCTCATACACGC 629
consensus_6583#0 TGAAGGATCTGGCGAAGGGTAT-CATACAACCGCTACCTA----CTACCGTCTTCCAGGC 651
* * ** * * * * * ** * * *** ** * ** **
consensus_6583#1 TGGTACGGGAGGTGTTGGTTTGGCCGCCATTCGTGTTTGTCTAGCTTACGGACTGGAGGT 494
consensus_6583#2 TG---------------------------------------------------------- 631
consensus_6583#0 TCATGAGATCGAGCAAGCATTCCGTTATCTTGCGACGGCCAAGCATATTGGAAAGGTTGT 711
*
consensus_6583#1 CTTCACTACCGTCAGTACCAAGGAGAAGCGTGACTTCCTGCTGAGCTACTTCCCCGACCT 554
consensus_6583#2 ------------------------------------------------------------
consensus_6583#0 CCTGAACATTCAGGATAACGAAGATGATCTTGCATCTGATCCGATATCTT---------- 761
consensus_6583#1 TAACCCCAACAATATCGGAAACTCCAGAGACATCTCCTTTGAAACGCTCATCAAAGAGCG 614
consensus_6583#2 ------------------------------------------------------------
consensus_6583#0 ------------------------------------------------------------
consensus_6583#1 TACCAATGGACGCGGTGTCGACTTTGTCCTCAACTC 650
consensus_6583#2 ------------------------------------
consensus_6583#0 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||