These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 686 fasta sequence [CCGCAATCCCACAAGTGATCTAGTTTGGCTGAGAAACTTTATTAAAAAAAAAAAAGAAAAACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATATTCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGAATGAAACGGGGAAAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAACAAAACAAAACAAAACAAAAACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAATGCTTTAATATTAGCCAAAAGCGTGTGAAGCGTTGTAGTAGAGGTACCTACGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAAGAAGGAGATTGGCACGACGAAGGCAATCCGGTAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTCGTTTGTTTTTGAGTTTATTTGAATGTGGGAAAAGAAGAAGAAGAAGAAAAAAATGCATCTTTATATCTCATTTCTCAACAAAACCCCGCGCGCGCGCCTAGGTAATTCCAGTTTCGTTTCCACCAACGAACGTCGGTCGCATAAATATAAATGTATGGCATGTG] [+] EMBL BM627818 [CCGCAATCCCACAAGTGATCTAGTTTGGCTGAGAAACTTTATTAAAAAAAAAAAAGAAAAACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATATTCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGAATGAAACGGGGAAAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAACAAAACAAAACAAAACAAAAACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAATGCTTTAATATTAGCCAAAAGCGTGTGAAGCGTTGTAGTAGAGGTACCTACGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAAGAAGGAGATTGGCACGACGAAGGCAATCCGGTAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTCGTTTGTTTTTGAGTTTATTTGAATGTGGGAAAAGAAGAAGAAGAAGAAAAAAATGCATCTTTATATCTCATTTCTCAACAAAACCCCGCGCGCGCGCCTAGGTAATTCCAGTTTCGTTTCCACCAACGAACGTC ] [-] EMBL BX627120 [ GGCTGAGAAACTTTATT AAAAAAAAAAGAAANACANCAAACAAACGAAACTATATATACTTATACATAATATTATANGTTAAAATCCATATTCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGAATGAAACGGAGAAAGGATGAACACACGCACCTATTGCTTATTG ] [+] EMBL BM650923 [ ccgAGGAAATTGGCACGACGAAGGCGATCCGGTAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTCGTTTGTTTTTGAGTTTATTTGAATGTGGGCAAAGAAGAAGAAGAAGATAAAAATGCATCTTTATATCTCATTTCTCAACAAAACCCCGCGCGCGCGCCTAGGTAATTCCAGTTTCGTTTCCACCAACGAACGTCGGTCGCATAAATATAAATGTATGGCATGTG] consensusID : consensus_6597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [CGACCCACGCGTCCGGTGATCTAGTTTGGCTGAGAAACTTTATTAAAACAAAGAAAAACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATATTCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGCATTGAAACGGAGAAAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAAACAAAACAAAACAAAAACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAATGCTTTAATATTAGCCAAAAGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCACGACGCAGGCGATCCGGCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCAT] [+] EMBL BM585545 [CGACCCACGCGTCCGGTGATCTAGTTTGGCTGAGAAACTTTATTAAAACAAAGAAAAACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATATTCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGCATTGAAACGGAGAAAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAAACAAAACAAAACAAAAACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAATGCTTTAATATTAGCCAAAAGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCACGACGCAGGCGATCCGGCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCAT] consensusID : consensus_6597#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [GACCCACGCGTCCGGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCACGACGCAGGCGATCCGTCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTGTTTTGAGTTTATTTGAATGTGGGCCAAGAAGGAGGAGAAGAAAAAACGCACCTTTATATCTCATTTCTCAACAAAACCCCGCGCGCGCCTAGG] [+] EMBL BM654497 [GACCCACGCGTCCGGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCACGACGCAGGCGATCCGTCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTGTTTTGAGTTTATTTGAATGTGGGCCAAGAAGGAGGAGAAGAAAAAACGCACCTTTATATCTCATTTCTCAACAAAACCCCGCGCGCGCCTAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6597#0 -CCGCAATCCCACAAGTGATCTAGTTTGGCTGAGAAACTTTATTAAAAAAAAAAAAGAAA 59 consensus_6597#1 CGACCCACGCGTCCGGTGATCTAGTTTGGCTGAGAAACTTTATTAAAAC----AAAGAAA 56 consensus_6597#2 ------------------------------------------------------------ consensus_6597#0 AACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATAT 119 consensus_6597#1 AACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATAT 116 consensus_6597#2 ------------------------------------------------------------ consensus_6597#0 TCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGAAT-GAAACGGGGA 178 consensus_6597#1 TCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGCATTGAAACGGAGA 176 consensus_6597#2 ------------------------------------------------------------ consensus_6597#0 AAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAACAAAACAAAACAAAACAAA 238 consensus_6597#1 AAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAA----ACAAAACAAAACAAA 232 consensus_6597#2 ------------------------------------------------------------ consensus_6597#0 AACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAAT 298 consensus_6597#1 AACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAAT 292 consensus_6597#2 ------------------------------------------------------------ consensus_6597#0 GCTTTAATATTAGCCAAAAGCGTGTGAAGCGTTGTAGTAGAGGTACCTACGGTAGGGCTG 358 consensus_6597#1 GCTTTAATATTAGCCAAAAGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTG 352 consensus_6597#2 -----GACCCACGCGTCCGGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTG 55 * ** *** ************************** ********** consensus_6597#0 GTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAAGAAGGAGATTGGCAC 418 consensus_6597#1 GTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCAC 412 consensus_6597#2 GTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCAC 115 ******************************************** ****** * ****** consensus_6597#0 GACGAAGGCAATCCGGTAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCA 478 consensus_6597#1 GACGCAGGCGATCCGGCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCA 472 consensus_6597#2 GACGCAGGCGATCCGTCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCA 175 **** **** ***** ******************************************* consensus_6597#0 TTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTCGTTTGTTTTTGAGTTT 538 consensus_6597#1 T----------------------------------------------------------- 473 consensus_6597#2 TTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTGTTTTGAGTTTATTTGA 235 * consensus_6597#0 ATTTGAATGTGGGAAAAGAAGAAGAAGAAGAAAAAAATGCATCTTTATATCTCATTTCTC 598 consensus_6597#1 ------------------------------------------------------------ consensus_6597#2 ATGTGGGCCAAGAAGGAGGAGAAGAAAAAACGCACCTTTATATCTCATTTCTCAACAAAA 295 consensus_6597#0 AACAAAACCCCGCGCGCGCGCCTAGGTAATTCCAGTTTCGTTTCCACCAACGAACGTCGG 658 consensus_6597#1 ------------------------------------------------------------ consensus_6597#2 CCCCGCGCGCGCCTAGG------------------------------------------- 312 consensus_6597#0 TCGCATAAATATAAATGTATGGCATGTG 686 consensus_6597#1 ---------------------------- consensus_6597#2 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||